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Bocconia frutescens little leaf, a new plant disease associated to a ´Candidatus Phytoplasma pruni´ related strain in Costa Rica Bocconia frutescens小叶,哥斯达黎加一种与 "Candidatus Phytoplasma pruni "相关菌株有关的新植物病害
Pub Date : 2024-07-10 DOI: 10.18781/r.mex.fit.2403-1
William Villalobos-Muller, L. Garita-Salazar, Ana María Conejo-Barboza, I. Sandoval-Carvajal, Mauricio Montero Astúa, Lisela Moreira-Carmona
Objective/Background. Bocconia frutescens (Papaveraceae) is a small tree distributed naturally from Mexico to Argentina and the Caribbean Bassin. Bocconia trees showing symptoms resembling phytoplasmas infection, such as little leaves and witches´-broom, were found in Cartago province, Costa Rica. Detection and identification of the potential phytoplasmas associated with B. frutescens little leaf symptoms was the objective out of this study. Materials and Methods. Evaluation of leaves tissue using transmission electron microscopy (TEM), nested PCR using universal and specific primers to amplify phytoplasmas 16S rRNA and secA genes. Nucleotidic sequences (Sanger method) were obtained from amplicons, and used for BLASTn, phylogenetic analyses, and in silico RFLP’s. Results. Presence of phytoplasmas into phloem tissue, only in symptomatic trees, was evidenced by TEM. Comparison of partial sequences (16Sr and secA genes) by BLASTn, in silico RFLP´s and phylogenetic analyses, showed the occurrence of a ´Candidatus Phytoplasma pruni´ related strain in the samples evaluated. Conclusion. Phytoplasmas were found only in the symptomatic B. frutescens trees evaluated. The phytoplasmas were identified as a ´Ca. Phytoplasma pruni´ related strain. This is the first report of B. frutescens as a natural host of ´Ca. Phytoplasma pruni´.
目的/背景。Bocconia frutescens(木犀科)是一种小乔木,自然分布于墨西哥到阿根廷和加勒比海盆地。在哥斯达黎加的卡塔戈省发现了一些 Bocconia 树,这些树表现出类似植物病原体感染的症状,如小叶子和女巫扫帚。本研究的目的是检测和鉴定与 B. frutescens 小叶症状相关的潜在植原体。材料和方法。使用透射电子显微镜(TEM)对叶片组织进行评估,使用通用引物和特异引物进行嵌套 PCR,扩增植原体 16S rRNA 和 secA 基因。从扩增子中获得核苷酸序列(桑格方法),并用于 BLASTn、系统发育分析和硅RFLP分析。结果只有在有症状的树木的韧皮部组织中才有植物病原体,这一点通过 TEM 得到了证明。通过 BLASTn 对部分序列(16Sr 和 secA 基因)进行比较,并进行系统发育分析和硅学 RFLP 分析,结果表明在评估的样本中发现了一种与 ´Candidatus Phytoplasma pruni´ 相关的菌株。结论仅在评估的有症状的 B. frutescens 树木中发现了植原体。植原体被鉴定为 ´Ca.Phytoplasma pruni´ 相关菌株。这是 B. frutescens 作为 ´Ca.Phytoplasma pruni´.
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引用次数: 0
Chemical composition of Tagetes hydrolates and in vitro and in vivo evaluation against disease ssociated fungi in strawberry (Fragaria x ananassa) 万寿菊水合化合物的化学成分以及对草莓(Fragaria x ananassa)病害相关真菌的体内外评价
Pub Date : 2024-07-10 DOI: 10.18781/r.mex.fit.2401-5
Miguel Ángel Ruíz-González, M. A. Serrato-Cruz, E. Valadez-Moctezuma, R. Solano-Vidal
Background / Objective. Aromatic plants contain chemical compounds with potential to formulate antifungal products. The objective of this study was to characterize the chemical composition in hydrolates of Tagetes species and to evaluate their effect in vitro and in vivo against disease-associated fungi in strawberry. Materials and Methods. The hydrolates of T. coronopifolia, T. minuta, T. parryi and T. terniflora were analyzed by gas chromatography coupled to a mass spectrometry. Hydrolates at 100, 75, 50 and 25 % and Promyl commercial fungicides were evaluated in vitro against Botrytis cinerea, Fusarium oxysporum, Rhizoctonia solani and Ridomil Gold against Phytophthora capsici. In the in vivo evaluation, strawberry plants sprayed with the hydrolates and 24 h later the plants were inoculated with 1 x 106 spore suspension. Data were analyzed by analysis of variance and Turkey’s means test (p ≤ 0.05). Results. Monoterpenes were the major compounds in the four Tagetes species. T. parryi hydrolate in vitro totally inhibited the growth of B. cinerea being effective as a preventive treatment in the in vivo evaluation. F. oxysporum, P. capsici and R. solani were less susceptible to all the hydrolats. Conclusion. T. parryi hydrolate can be applied as a preventative against B. cinerea on strawberry plants.
背景/目的。芳香植物所含的化合物具有配制抗真菌产品的潜力。本研究的目的是鉴定万寿菊水合化合物的化学成分,并评估其在体外和体内对草莓中与疾病相关的真菌的作用。材料和方法。采用气相色谱-质谱联用技术分析了 T. coronopifolia、T. minuta、T. parryi 和 T. terniflora 的水合产物。在体外对 100%、75%、50% 和 25% 的 Hydrolates 和 Promyl 商用杀菌剂进行了评估,以对抗灰霉病菌、镰孢菌和根瘤菌,并对 Ridomil Gold 对抗疫霉进行了评估。在体内评估中,草莓植株喷洒了水合制剂,24 小时后植株接种了 1 x 106 孢子悬浮液。数据分析采用方差分析和土耳其均值检验(P ≤ 0.05)。结果单萜是四种万寿菊中的主要化合物。T. parryi 水解产物在体外能完全抑制 B. cinerea 的生长,在体内评估中也能有效预防。F. oxysporum、P. capsici 和 R. solani 对所有水合酯的敏感性都较低。结论T. parryi 水解剂可用于预防草莓植株上的菌核病。
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引用次数: 0
In vitro antagonism of Clonostachys sp. against disease associated fungi in economically important crops Clonostachys sp.对重要经济作物病害相关真菌的体外拮抗作用
Pub Date : 2024-06-07 DOI: 10.18781/r.mex.fit.2401-1
María Emilia Belingheri Lagunes, Rosario Medel-Ortiz, Alejandro Salinas-Castro, Dora Trejo Aguilar
Objectives/Background. The objective of this work was to evaluate the in vitro antagonistic capacity of a strain of Clonostachys sp. against five species of fungi associated with diseases in economically important crops. Materials and Methods. Five fungal species associated with crop diseases were tested: Alternaria alternata, Colletotrichum kahawae, C. musae, Fusarium oxysporum and F. solani. Dual cultures were performed with five replicates plus controls. Growth was recorded every 24 hours, until 360 hours were completed. Interactions were determined, the degree of antagonism and the percentage of colonization was calculated. Statistical analyses were performed with a generalized linear model (GLM). Results. All species evaluated showed antagonism of the overgrowth type. The degree of antagonism was classified into three classes, with class two being present in three of the species. The percentage of colonization was 100% at 216 h for three of the species and 264 h for the other two. There was no significant difference in the percentage of colonization (p =0.0073), but there was a significant difference in the time of invasion (p< 0.0001). Conclusion. Dual assays to test the antagonistic effect in vitro form the basis for the selection of candidates for biological control of fungi.
目标/背景。这项工作的目的是评估 Clonostachys sp.菌株对五种与重要经济作物病害有关的真菌的体外拮抗能力。材料与方法。测试了与作物病害相关的五种真菌:Alternaria alternata、Colletotrichum kahawae、C. musae、Fusarium oxysporum 和 F. solani。进行了五次重复加对照的双重培养。每 24 小时记录一次生长情况,直至 360 小时结束。确定交互作用,计算拮抗程度和定殖百分比。采用广义线性模型(GLM)进行统计分析。结果所有被评估的物种都表现出过度生长类型的拮抗作用。拮抗程度分为三个等级,其中三个物种的拮抗程度为二级。其中三个物种在 216 小时内的定殖率为 100%,另外两个物种在 264 小时内的定殖率为 100%。定殖率没有显著差异(p =0.0073),但入侵时间有显著差异(p< 0.0001)。结论在体外测试拮抗作用的双重试验是选择候选真菌生物防治方法的基础。
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引用次数: 0
Cellulase and chitinase production by Fusarium oxysporum f.sp. cubense race 1 in submerged culture 浸没式培养中 Fusarium oxysporum f.sp. cubense race 1 产生的纤维素酶和几丁质酶
Pub Date : 2023-12-29 DOI: 10.18781/r.mex.fit.2307-2
D. J. Hernández-Melchor, R. Ferrera-Cerrato, C. García-Ávila, Alejandro Alarcón
Fusarium has the capability to produce hydrolytic enzymes that can be used in the food and alcohol industries to break down natural organic compounds. This work studied the ability of Fusarium oxysporum f. sp. cubense race 1 (FocR1) to produce cellulases and chitinases enzymes in submerged culture using different carbon sources. Five strains of FocR1 (CNRF-MIC17188, CNRF-MIC17189, CNRF-MIC17190, CNRF-MIC17191, and CNRF-MIC17192) were used in submerged culture for the degradation of three substrates [filter paper, newspaper, and chitin (Sigma®)], from where the radial growth rate (RGr) and the quantitative analysis of enzyme activities (FPase, CMCase and chitinase) were evaluated. The RGr of the five FocR1 strains oscillated in a range of 0.043 to 0.051 cm h-1. At 7 and 14 days, the five FocR1 strains produced cellulases and chitinases using the three substrates. Based on the statistical analysis, the strains CNRF-MIC17191 and CNRF-MIC17192 showed best results about enzymatic activities. The five strains of FocR1 can be exploited as a commercial source of cellulases and chitinases, as well as potential candidates for bioconverting complex C-sources for further utilization in industrial processes.
镰刀菌能够产生水解酶,可用于食品和酒精工业,分解天然有机化合物。这项工作研究了 Fusarium oxysporum f. sp. cubense race 1(FocR1)利用不同碳源在浸没培养中产生纤维素酶和几丁质酶的能力。采用五株 FocR1 菌株(CNRF-MIC17188、CNRF-MIC17189、CNRF-MIC17190、CNRF-MIC17191 和 CNRF-MIC17192)进行浸没培养,降解三种基质[滤纸、报纸和甲壳素(Sigma®)],并从中评估径向生长速率(RGr)和酶活性(FPase、CMCase 和甲壳素酶)的定量分析。五个 FocR1 菌株的 RGr 在 0.043 至 0.051 cm h-1 的范围内波动。在 7 天和 14 天时,五株 FocR1 菌株利用三种底物产生了纤维素酶和几丁质酶。根据统计分析,CNRF-MIC17191 和 CNRF-MIC17192 的酶活性最好。这五株 FocR1 菌株可作为纤维素酶和几丁质酶的商业来源,也是生物转化复杂 C 源以进一步用于工业过程的潜在候选菌株。
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引用次数: 0
Phytopathology and cultural behaviors: putative introduction of Chaya-strain of Cassava common mosaic virus to Costa Rica 植物病理学和文化行为:推测哥斯达黎加引进了木薯普通花叶病毒的 Chaya 株系
Pub Date : 2023-12-29 DOI: 10.18781/r.mex.fit.2023-3
M. Montero-Astúa, I. Sandoval-Carvajal, Lisela Moreira-Carmona, William Villalobos-Muller, L. Garita-Salazar, Sofía Carvajal-Rojas
Leaves of the shrub chaya (Cnidoscolus aconitifolius), spinach tree or ‘chicasquil’ (in Costa Rica), are consumed in the Mesoamerican culinary tradition, having its origin in South Mexico and Guatemala. The objective of this work was to verify the viral nature of the observed in a chaya plant disease and to identify the species of the virus. Plant virus detection and identification was achieved by TEM, RT-PCR using degenerated primers to potexviruses, and sequencing. Pathogenicity tests were done by mechanical inoculation using chaya symptomatic tissue, on Nicotiana benthamiana and chaya plants. We report CsCMV detection in a chaya plant in Costa Rica with mosaic symptoms. Pathogenicity and association of virus and symptoms were demonstrated by mechanical inoculation in Nicotiana benthamiana and chaya plants. We hypothesize this infection corresponds to a recent introduction and discussed how cultural traditions impact the distribution of plant viruses. The findings confirm the presence of a CsCMV-related virus, previously unreported for Costa Rica, in Cnidoscolus aconitifolius. The results herein highlighted the need to study its distribution and diversity throughout Latin America.
灌木 Chaya(Cnidoscolus aconitifolius)、菠菜树或 "chicasquil"(在哥斯达黎加)的叶子在中美洲烹饪传统中被食用,其起源地在南墨西哥和危地马拉。这项工作的目的是验证在查亚植物病害中观察到的病毒性质,并确定病毒的种类。植物病毒的检测和鉴定是通过 TEM、RT-PCR(使用 potexviruses 的退化引物)和测序来实现的。致病性试验是通过机械接种的方式在烟草和油茶植株上使用油茶症状组织进行的。我们报告在哥斯达黎加一株出现马赛克症状的番荔枝植株中检测到了 CsCMV。通过机械接种在烟草和番荔枝植株上,证明了病毒的致病性和与症状的关联性。我们推测这种感染是最近传入的,并讨论了文化传统如何影响植物病毒的分布。研究结果证实,在哥斯达黎加的 Cnidoscolus aconitifolius 中发现了一种与 CsCMV 相关的病毒,此前未曾报道过。研究结果突出表明,有必要对其在整个拉丁美洲的分布和多样性进行研究。
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引用次数: 0
Current situation of viticulture in Costa Rica and management strategies for downy mildew (Plasmopara viticola) 哥斯达黎加葡萄栽培现状及霜霉病(Plasmopara viticola)防治策略
Pub Date : 2023-12-28 DOI: 10.18781/r.mex.fit.2309-3
Daniel Castrillo-Sequeira, Rodrigo Jiménez-Robles, Milagro Granados-Montero
Viticulture is one of the oldest agricultural activities, and its exploitation has traditionally been limited to temperate climate zones, where the european grapevine (Vitis vinifera) and wine originate. Given the effects of climate change, more areas lose the capacity to grow this crop, and the tropics are presented as potential regions for this market. In Costa Rica, viticultural activity has been reported since the mid-20th century, however, technical information on the crop is scarce. Downy mildew, caused by the oomycete Plasmopara viticola, represents one of the diseases with the greatest economic impact for viticulture worldwide, as well as the most limiting phytosanitary problem in Costa Rica. Under high humidity conditions, the development of the pathogen is accelerated, and the host remains susceptible throughout the crop cycle, which makes proper management of epidemics difficult. Chemical control is the most common management strategy around the world, however, the appearance of P. viticola populations with resistance to fungicides has been observed in most grape vine-growing areas, hence the search for more ecological alternatives is a necessity. Currently, Costa Rica does not have integrated management strategies that allow sustainable production, and there is only one registered product for protection against this pathogen. This situation justifies paying more attention to the investigation of this pathosystem.
葡萄栽培是最古老的农业活动之一,其开发传统上仅限于温带气候区,欧洲葡萄藤(Vitis vinifera)和葡萄酒就起源于温带气候区。鉴于气候变化的影响,更多地区失去了种植这种作物的能力,热带地区成为这一市场的潜在区域。在哥斯达黎加,自 20 世纪中期以来就有葡萄栽培活动的报道,但有关该作物的技术信息却很少。霜霉病是由卵菌葡萄霜霉病菌(Plasmopara viticola)引起的,是对全球葡萄种植业经济影响最大的病害之一,也是哥斯达黎加最棘手的植物检疫问题。在高湿度条件下,病原体的发展速度加快,宿主在整个作物周期内都易感,这给流行病的适当管理带来了困难。化学防治是世界上最常见的管理策略,但在大多数葡萄种植区都发现了对杀菌剂产生抗性的葡萄孢菌群,因此必须寻找更生态的替代方法。目前,哥斯达黎加还没有能够实现可持续生产的综合管理策略,而且只有一种注册产品可以防治这种病原体。在这种情况下,有必要更加重视对这一病理系统的研究。
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引用次数: 0
Diagrammatic scale to quantify the severity of Ascochyta blight in broad bean crops 量化蚕豆疫病严重程度的图解尺度
Pub Date : 2023-12-28 DOI: 10.18781/r.mex.fit.2209-4
Ernesto Alonso López-Reyes, Á. Castañeda-Vildózola, J. R. Sánchez-Pale, Alejandra Contreras-Rendón, Juyma Mayvé Fragoso-Benhumea, R. García-Velasco
The objective of this study was to design and validate a diagrammatic severity scale of brown spot on broad bean. We collected 120 leaflets with different level of brown spot damage from commercial crops in the Toluca Valley, which were visually selected based on the expressed symptomology. Sixty leaflets were scanned for evaluation with the software APS PRESS ©Assess 2.0 to determine the real severity value for each leaflet. The damage values allowed us to generate a diagrammatic scale consisting of six different classes: 0(0.0), 1(0.1-6.0), 2(6.1-10.0), 3(10.1-15.0), 4(15.1-40.0), 5(> 40.1-100). The leaflets were visually examined by evaluators who had no prior experience. The results from each evaluator were analyzed with a simple linear regression, obtaining r2 values from 0.0042 to 0.8748, β0 de 0.51 a 9.11, y β1 de 0.132 a 0.925. Using a scale, r2 values were obtained 0.9143 to 0.985, β0 de 0.001 a 0.911 y β1<0.001. The generated diagrammatic severity scale was validated and reproducible, showing high reliability.
本研究的目的是设计并验证蚕豆褐斑病严重程度的图解量表。我们从托卢卡谷地的经济作物中收集了 120 片不同程度褐斑病危害的小叶,并根据症状表现进行了目测筛选。使用 APS PRESS ©Assess 2.0 软件对 60 张小叶进行扫描评估,以确定每张小叶的实际严重程度值。根据损害值,我们生成了一个由六个不同等级组成的图解量表:0(0.0), 1(0.1-6.0), 2(6.1-10.0), 3(10.1-15.0), 4(15.1-40.0), 5(> 40.1-100).由没有经验的评估员对传单进行目测。通过简单的线性回归分析每位评估员的结果,得到的 r2 值从 0.0042 到 0.8748,β0 为 0.51 到 9.11,β1 为 0.132 到 0.925。使用量表得出的 r2 值为 0.9143 至 0.985,β0 de 0.001 a 0.911 y β1<0.001。所生成的图解严重程度量表经过验证,可重复使用,显示出较高的可靠性。
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引用次数: 0
Induction of defense response mediated by inulin from dahlia tubers (Dahlia sp.) in Capsicum annuum 以大丽花块茎(大丽花属)中的菊粉为介质诱导辣椒防御反应
Pub Date : 2023-12-28 DOI: 10.18781/r.mex.fit.2305-2
J. C. López-Velázquez, Soledad García-Morales, J. A. Qui-Zapata, Z. García-Carvajal, D. Navarro-López, Rebeca García-Varela
Phytophthora capsici is the causal agent of chili wilt. Among the strategies for its control is the use of resistance inducers. Fructans are molecules with interesting biological properties, including the ability to induce resistance mechanisms in some plants. In this work, the protective effect of four concentrations inulin from dahlia tubers on chili infected with P. capsici was evaluated. The concentration that showed the highest protection was chosen to evaluate the induction of defense response through the enzymatic activity of β-1,3 glucanases, peroxidases and the production of total phenolic compounds. Inulin showed a protective effect against infection at concentrations of 100 to 300 μM, as symptoms decreased and seedlings showed improved vegetative development. It was observed that inulin at 200 μM concentration was able to induce an effective defense response associated with increased activity of β-1,3 glucanases and peroxidases through a local and systemic response in seedlings. This response was differentiated between seedlings treated with inulin and seedlings infected with P. capsici. It was concluded that inulin has the ability to protect chili bell pepper from P. capsici by induction of resistance.
疫霉菌是辣椒枯萎病的病原菌。其控制策略之一是使用抗性诱导剂。果聚糖是一种具有有趣生物特性的分子,包括能够诱导某些植物的抗性机制。在这项工作中,我们评估了从大丽花块茎中提取的四种浓度的菊粉对受辣椒疫霉菌感染的辣椒的保护作用。研究人员选择了保护作用最强的浓度,通过β-1,3葡聚糖酶、过氧化物酶的酶活性和总酚类化合物的产生来评估防御反应的诱导作用。菊粉在浓度为 100 至 300 μM 时对感染有保护作用,症状减轻,幼苗的无性系发育得到改善。据观察,菊粉浓度为 200 μM 时,能通过秧苗的局部和系统反应,诱导出有效的防御反应,并提高了 β-1,3葡聚糖酶和过氧化物酶的活性。这种反应在用菊粉处理过的秧苗和感染了荚膜褐飞虱的秧苗之间有所区别。结论是菊粉能够通过诱导抗性来保护辣椒免受褐飞虱的侵害。
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引用次数: 0
Viruses and viroids in tomato (Solanum lycopersicum) and plant growth promoting rhizobacteria as a management alternative 番茄(Solanum lycopersicum)中的病毒和病毒病,以及作为管理替代办法的植物生长促进根瘤菌
Pub Date : 2023-12-26 DOI: 10.18781/r.mex.fit.2023-7
E. J. Zamora-Macorra, Norma Ávila-Alistac, Erika Lagunes-Fortiz, Sergio de los Santos-Villalobos
Viruses and viroids cause several diseases in tomato (Solanum lycopersicum) worldwide, generating important economic losses. About 312 viruses and seven viroids have been associated, of which more than 28 are present in Mexico. Therefore, the use of Plant Growth-Promoting Rhizobacteria (PGPR) can be an effective alternative for the management of viruses and viroids. The genera Pseudomonas, Bacillus, Azospirillum, Anabena and Stenotrophomonas have been implemented against main viruses reported in tomato: Cucumber mosaic virus (CMV), Tobacco mosaic virus (TMV), Tomato chlorotic spot virus (TCSV), Tomato mottle virus (ToMoV), Tomato spotted wilt virus (TSWV), Tomato yellow leaf curl virus (TYLCV), Potato virus Y (PVY), Groundnut bud necrosis virus (GBNV), with benefits in decreased incidence and severity up to 80 % and yield increase over 40 %. In Mexico, only Bacillus has been used. The use of PGPR is a strategy that could mitigate the impact of viral and viroid diseases and can be integrated into integrated management.
病毒和病毒病在全球番茄(Solanum lycopersicum)中引发多种病害,造成重大经济损失。大约有 312 种病毒和 7 种病毒病,其中超过 28 种存在于墨西哥。因此,使用植物生长促进根瘤菌(PGPR)可以有效地替代病毒和病毒。假单胞菌属、芽孢杆菌属、Azospirillum 菌属、Anabena 菌属和 Stenotrophomonas 菌属已被用于防治番茄中报告的主要病毒:黄瓜花叶病毒 (CMV)、烟草花叶病毒 (TMV)、番茄萎黄斑点病毒 (TCSV)、番茄斑驳病毒 (ToMoV)、番茄斑点枯萎病病毒 (TSWV)、番茄黄叶卷曲病毒 (TYLCV)、马铃薯病毒 Y (PVY)、落花生芽坏死病毒 (GBNV)。墨西哥只使用了芽孢杆菌。使用 PGPR 是一种可减轻病毒和病毒病影响的策略,可纳入综合管理。
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引用次数: 0
Virome of the vegetable prickly pear cactus in the central zone of Mexico 墨西哥中部地区植物刺梨仙人掌的病毒组
Pub Date : 2023-12-26 DOI: 10.18781/r.mex.fit.2023-2
Candelario Ortega-Acosta, D. Ochoa-Martínez, R. Rojas-Martínez, Cristian Nava-Díaz, Rodrigo A. Valverde
In this study, the ability of high-throughput sequencing (HTS) to detect viruses in vegetable prickly pear cactus was exploited. Samples from State of Mexico (EDMX), Hidalgo, and Morelos, as well as Mexico City (CDMX), were analyzed. In the sample from EDMX, the genomes of Opuntia virus 2 (OV2, genus Tobamovirus) and Cactus carlavirus 1 (CCV-1, genus Carlavirus) were detected and recovered. In the sample from CDMX, in addition to OV2 and CCV-1, a new viroid and potexvirus were detected. The former has a circular RNA genome with a length of 412 nt for which the name “Opuntia viroid I” (OVd-I) is proposed. The primary structure of this viroid showed a nucleotide sequence identity of less than 80% with any of the currently known viroids and a phylogenetic relationship with the genus Apscaviroid (Family Pospiviroidae) with which it shares conserved structural motifs. The new potexvirus was named Opuntia potexvirus A (OPV-A), whose viral replicase sequence has a 77.7 % amino acid identity with Schlumbergera virus X. Finally, CCV-1 was detected in 93 (72 %) of 129 vegetable prickly pear cactus samples collected in the four entities.
本研究利用高通量测序技术(HTS)检测蔬菜刺梨仙人掌中的病毒。对墨西哥州(EDMX)、伊达尔戈州、莫雷洛斯州以及墨西哥城(CDMX)的样本进行了分析。在 EDMX 的样本中,检测到并恢复了 Opuntia 病毒 2(OV2,Tobamovirus 属)和仙人掌黄病毒 1(CCV-1,Carlavirus 属)的基因组。在 CDMX 的样本中,除了 OV2 和 CCV-1,还检测到了一种新的病毒和 potexvirus。前者的环状 RNA 基因组长度为 412 nt,因此被命名为 "Opuntia 病毒 I"(OVd-I)。该病毒的一级结构显示,其核苷酸序列与目前已知的任何一种病毒的一致性均低于 80%,并与 Apscaviroid 属(Pospiviroidae 科)有系统发育关系,其结构模式与 Apscaviroid 属相同。这种新的植物病毒被命名为 Opuntia potexvirus A(OPV-A),其病毒复制酶序列与 Schlumbergera virus X 有 77.7 % 的氨基酸相同性。最后,在四个实体采集的 129 份蔬菜刺梨仙人掌样本中,有 93 份(72%)检测到了 CCV-1。
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引用次数: 0
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