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Modified mutual information feature selection algorithm to predict COVID-19 using clinical data. 利用临床数据预测 COVID-19 的修正互信息特征选择算法。
IF 1.7 4区 医学 Q3 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Pub Date : 2024-11-20 DOI: 10.1080/10255842.2024.2429012
R Ame Rayan, A Suruliandi, S P Raja

The COVID-19 pandemic has profoundly impacted health, emphasizing the need for timely disease detection. Blood tests have become key diagnostic tools due to the virus's effects on blood composition. Accurate COVID-19 prediction through machine learning requires selecting relevant features, as irrelevant features can lower classification accuracy. This study proposes Modified Mutual Information (MMI) for feature selection, ranking features by relevance and using backtracking to find the optimal subset. Support Vector Machines (SVM) are then used for classification. Results show that MMI with SVM achieves 95% accuracy, outperforming other methods, and demonstrates strong generalizability on various benchmark datasets.

COVID-19 大流行严重影响了人们的健康,强调了及时发现疾病的必要性。由于病毒对血液成分的影响,血液检测已成为关键的诊断工具。通过机器学习准确预测 COVID-19 需要选择相关的特征,因为不相关的特征会降低分类的准确性。本研究提出了用于特征选择的修正互信息(MMI),根据相关性对特征进行排序,并使用回溯法找到最佳子集。然后使用支持向量机(SVM)进行分类。结果表明,MMI 与 SVM 的准确率达到 95%,优于其他方法,并在各种基准数据集上表现出很强的普适性。
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引用次数: 0
Effects of inlet boundary conditions on blood flow and thrombosis modelling in patients with chronic thromboembolic pulmonary hypertension. 入口边界条件对慢性血栓栓塞性肺动脉高压患者血流和血栓形成模型的影响。
IF 1.7 4区 医学 Q3 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Pub Date : 2024-11-20 DOI: 10.1080/10255842.2024.2429789
Hui Wu, Linfeng Xi, Yueming Hao, Min Liu, Qiang Huang, Tianxiang Ma, Xiaoyan Deng, Zhenguo Zhai, Xiao Liu

To investigate the impact of patient-specific boundary conditions (BC) on blood flow and thrombosis modelling for patients with chronic thromboembolic pulmonary hypertension (CTEPH), three types of BCs were utilized to construct CTEPH models based on computed tomography pulmonary angiography images. First BC type is the patient-specific velocity profiles at the main pulmonary artery using phase contrast MRI (PC-MRI). The other two simplified types are the pulsatile BC and steady BC, which are obtained by spatially and temporally averaging the PC-MRI BC. Hemodynamic features including helical density, time-averaged wall shear stress (TAWSS) and oscillatory shear index (OSI), and thrombosis were compared for the three types BCs. The results indicated that, compared to the MRI BC, steady BC overestimated helical density and TAWSS in the pulmonary arteries by approximately 63.1% and 60%, respectively. The impact of simplified pulsatile BC on TAWSS and OSI in most regions of the pulmonary arteries was negligible with differences within 5%. Regarding thrombosis, the area predicted under pulsatile BC was approximately 80% smaller than that under PC-MRI BC. In conclusion, compared to PC-MRI BC, steady inlet BC tend to overestimate hemodynamic parameters, while pulsatile inlet BC yield similar wall shear stress based on parameters in most regions of the pulmonary artery. Patient-specific PC-MRI inlet BC should be used for accurate predictions of helical flow pattern and thrombus formation.

为了研究患者特异性边界条件(BC)对慢性血栓栓塞性肺动脉高压(CTEPH)患者血流和血栓形成模型的影响,我们利用三种类型的BC来构建基于计算机断层扫描肺血管造影图像的CTEPH模型。第一种 BC 是利用相位对比 MRI(PC-MRI)获得的主肺动脉患者特异性速度曲线。另外两种简化类型是脉动 BC 和稳定 BC,它们是通过对 PC-MRI BC 进行空间和时间平均而得到的。比较了三种 BC 的血液动力学特征,包括螺旋密度、时间平均壁剪切应力(TAWSS)和振荡剪切指数(OSI)以及血栓形成。结果表明,与 MRI BC 相比,稳定 BC 高估了肺动脉的螺旋密度和 TAWSS,分别高估了约 63.1% 和 60%。简化脉动 BC 对肺动脉大部分区域的 TAWSS 和 OSI 的影响微乎其微,差异在 5%以内。在血栓形成方面,搏动性 BC 预测的面积比 PC-MRI BC 小约 80%。总之,与 PC-MRI BC 相比,稳定型入口 BC 往往会高估血流动力学参数,而根据肺动脉大部分区域的参数,搏动型入口 BC 能产生相似的壁剪应力。应使用患者特异性 PC-MRI 入口 BC 来准确预测螺旋流模式和血栓形成。
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引用次数: 0
In silico study of novel coumarin derivatives as potential agents in the pancreatic cancer treatment. 新型香豆素衍生物作为胰腺癌治疗潜在药物的硅学研究。
IF 1.7 4区 医学 Q3 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Pub Date : 2024-11-20 DOI: 10.1080/10255842.2024.2431345
Svetlana Jeremić, Edina Avdović, Zana Dolićanin, Radiša Vojinović, Marko Antonijević, Zoran Marković

Pancreatic ductal adenocarcinoma (PDAC) is one of the deadliest diseases. Here are investigated two synthesized and two hypothetical coumarin derivatives, and their capacity to be used in the PDAC targeted treatment. The inhibitory activity of these four molecules against PARP, ATM, and CHK1 proteins responsible for DNA molecule repair was examined by docking and molecular dynamic analysis. ADMET analysis was applied to determine the pharmacokinetic properties of the tested compounds. The applied theoretical approach showed that the biomedical activity of the investigated coumarins is comparable to the inhibitory activity and pharmacokinetic properties of Olaparib, already used in the PDAC treatment.

胰腺导管腺癌(PDAC)是最致命的疾病之一。本文研究了两种合成的香豆素衍生物和两种假定的香豆素衍生物,以及它们用于 PDAC 靶向治疗的能力。通过对接和分子动力学分析,研究了这四种分子对负责 DNA 分子修复的 PARP、ATM 和 CHK1 蛋白的抑制活性。ADMET 分析用于确定受试化合物的药代动力学特性。应用的理论方法表明,所研究的香豆素类化合物的生物医学活性与已用于治疗 PDAC 的奥拉帕利的抑制活性和药代动力学特性相当。
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引用次数: 0
What is the most important mechanical factor involved in trapeziometacarpal osteoarthritis development? A sensitivity analysis based on biomechanical modelling. 什么是参与梯形掌骨性关节炎发展的最重要的机械因素?基于生物力学模型的敏感性分析。
IF 1.7 4区 医学 Q3 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Pub Date : 2024-11-19 DOI: 10.1080/10255842.2024.2430446
Thomas Valerio, Jean-Louis Milan, Benjamin Goislard de Monsabert, Laurent Vigouroux

Few studies consider the variability of the model parameters. This study aimed to perform a sensitivity analysis of a trapeziometacarpal joint model, by performing 675 finite element simulations built from the combination of different morphologies, joint passive stiffness, and grip strategies to estimate the joint pressure. Pressure variability was significantly more affected by morphology than grip strategy and joint passive stiffness. The effect of morphology and grip strategy on joint pressure was significant. A significant correlation between the trapezium dorso-volar curvature and the joint pressure was found. Morphology seems more important than the other parameters to estimate joint contact pressure correctly.

很少有研究考虑到模型参数的可变性。本研究旨在对梯形掌关节模型进行敏感性分析,通过对不同形态、关节被动刚度和抓握策略组合建立的 675 个有限元模拟来估算关节压力。压力变化受形态的影响明显大于抓握策略和关节被动僵硬度。形态和抓握策略对关节压力的影响是显著的。研究发现,梯形背伏弧度与关节压力之间存在明显的相关性。要正确估计关节接触压力,形态似乎比其他参数更重要。
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引用次数: 0
Identification of constitutive law for 3d-printed bioresorbable thermosensitive polymer to design medical devices for soft tissue reconstruction. 确定 3d 打印生物可吸收热敏聚合物的构成规律,以设计用于软组织重建的医疗器械。
IF 1.7 4区 医学 Q3 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Pub Date : 2024-11-18 DOI: 10.1080/10255842.2024.2427114
Xuan-Tien Kévin Trinh, Pauline Lecomte-Grosbras, Jean-François Witz, Olivier Mayeur, Shengheng Cao, Jaime Destouesse, François Lesaffre, Michel Cosson, Tien-Tuan Dao

Breast cancer concerns 1 in 8 women in the world and is followed in 40% of cases by a mastectomy. Only 14% of women receive reconstructive surgery because of unfavorable clinical issues. The need of innovative tissue engineering devices leads Lattice Medical company to bring a new 3D-printed device, allowing the regeneration of soft tissue in order to replace the withdrawn breast. The implant, based on TEC (tissue engineering chamber) and fat-flat surgical technique, is constituted with bioresorbable thermosensitive materials to be fully absorbed by the body in several months, once the regeneration process is completed. In this industrial context, we need to assess some properties for predictive simulation: the TEC mechanical and biological properties over time, its sensitivity to implantation in the body temperature, its batch raw material variability and its structural 3D-printed behavior. This would lead to a more enlightened numerical design and topological optimization work. To do so, mechanical testing are conducted to gather necessaries information for fully border the behaviour of the material and eventually the impact of the process on the final prosthesis. Then, the G'sell Law is chosen to model the mechanical behaviour of the material taking into account all particularities of this medical case. Finally, the behaviour law is used in Finite Element Method (FEM) in a compression simulation to compare with experimental results which find good similarity in the mechanical response.

全世界每 8 名妇女中就有 1 人罹患乳腺癌,40% 的患者会接受乳房切除手术。由于不利的临床问题,只有 14% 的妇女接受了整形手术。对创新型组织工程设备的需求促使莱迪思医疗公司推出了一种新型 3D 打印设备,可使软组织再生,以替代切除的乳房。这种植入物基于 TEC(组织工程腔室)和脂肪平坦手术技术,由生物可吸收热敏材料构成,一旦再生过程完成,几个月后就会被人体完全吸收。在这种工业背景下,我们需要对一些特性进行评估,以便进行预测性模拟:TEC 随时间变化的机械和生物特性、其对植入体温的敏感性、其批量原材料的可变性以及其结构性 3D 打印行为。这将有助于进行更明智的数值设计和拓扑优化工作。为此,需要进行机械测试,收集必要的信息,以全面了解材料的行为,并最终了解工艺对最终假体的影响。然后,考虑到该医疗案例的所有特殊性,选择 G'sell 法来模拟材料的机械性能。最后,在有限元法(FEM)中使用该行为定律进行压缩模拟,与实验结果进行比较,发现两者在机械响应方面非常相似。
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引用次数: 0
Biomechanical analysis of nickel-titanium (NiTi)-cobalt-chromium (CoCr) hybrid-braided dense-mesh stents for carotid artery stenosis. 镍钛(NiTi)-钴铬(CoCr)混合编织致密网支架治疗颈动脉狭窄的生物力学分析。
IF 1.7 4区 医学 Q3 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Pub Date : 2024-11-14 DOI: 10.1080/10255842.2024.2428720
Yunchuan Zhao, Haipo Cui, Xudong Guo, Jingcheng Lang

This study investigates NiTi-CoCr hybrid carotid artery stents to enhance mechanical properties over NiTi-only designs. Different configurations (24NiTi, 20NiTi-4CoCr, 16NiTi-8CoCr, and 12NiTi-12CoCr) were evaluated through radial compression and bending simulations. The 12NiTi-12CoCr stent showed the highest radial support (39.37 N) and increased bending strength by 77.96%. When modeled in a stenotic artery, this stent reduced stenosis from 81.52% to 29.33% and improved blood flow dynamics, alleviating high-pressure zones and balancing wall shear stress. These results suggest that CoCr wires improve stent performance, with the 12NiTi-12CoCr stent offering significant biomechanical and hemodynamic benefits.

本研究探讨了镍钛钴混合颈动脉支架,以提高其机械性能。通过径向压缩和弯曲模拟,对不同配置(24镍钛、20镍钛-4钴铬、16镍钛-8钴铬、12镍钛-12钴铬)进行了评估。12NiTi-12CoCr 支架的径向支撑力最大(39.37 N),弯曲强度增加了 77.96%。在狭窄动脉中建模时,这种支架将狭窄程度从 81.52% 降低到 29.33%,并改善了血流动力学,减轻了高压区,平衡了管壁剪切应力。这些结果表明,钴铬合金丝可改善支架性能,其中 12NiTi-12CoCr 支架在生物力学和血液动力学方面具有显著优势。
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引用次数: 0
A comparison of head impact characteristics during elite men's Rugby Union fifteens and sevens match play. 男子橄榄球联盟十五人制和七人制精英比赛中头部撞击特征的比较。
IF 1.7 4区 医学 Q3 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Pub Date : 2024-11-14 DOI: 10.1080/10255842.2024.2422928
Bianca Paiement, Clara Karton, Michael D Gilchrist, T Blaine Hoshizaki

Different forms of rugby may pose distinct risks to head injury. Video of rugby match footage was analyzed using head impact magnitude, frequency, and time interval for 15s and 7s athletes. Impacts were reconstructed in laboratory, and finite element modeling was used to estimate maximum principal strain. No difference was found in impact frequency or time interval between the two forms. Significantly more head impacts of higher severity levels were documented during 7s. These findings provide objective comparisons between 7s and 15s which may guide risk mitigation strategies in managing brain trauma for specific forms of rugby.

不同形式的橄榄球运动可能会造成不同的头部伤害风险。我们利用橄榄球比赛录像,分析了 15s 和 7s 运动员头部受到撞击的程度、频率和时间间隔。在实验室中对撞击进行重建,并使用有限元模型估算最大主应变。两种形式的撞击频率和时间间隔均无差异。在 7 人制比赛中,严重程度较高的头部撞击明显增多。这些研究结果对 7 人制橄榄球和 15 人制橄榄球进行了客观的比较,可为管理特定橄榄球形式的脑外伤的风险缓解策略提供指导。
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引用次数: 0
A biomechanical model for cell sensing and migration. 细胞感应和迁移的生物力学模型
IF 1.7 4区 医学 Q3 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Pub Date : 2024-11-13 DOI: 10.1080/10255842.2024.2427112
Arnaud Chauvière, Ian Manifacier, Claude Verdier, Grégory Chagnon, Ibrahim Cheddadi, Nicolas Glade, Angélique Stéphanou

We developed an original computational model for cell deformation and migration capable of accounting for the cell sensitivity to the environment and its appropriate adaptation. This cell model is ultimately intended to be used to address tissue morphogenesis. Hence it has been designed to comply with four requirements: (1) the cell should be able to probe and sense its environment and respond accordingly; (2) the model should be easy to parametrize to adapt to different cell types; (3) the model should be able to extend to 3D cases; (4) simulations should be fast enough to integrate many interacting cells. The simulations carried out focused on two aspects: first, the general behaviour of the cell on a homogeneous substrate, as observed experimentally, for model validation. This enabled us to decipher the mechanisms by which the cell can migrate, highlighting respective influences of the adhesions lifetimes and their sensitivity to traction; second, it predicts the sensitivity of the cell to an anisotropic patterned substrate, in agreement with recently published experiments. The results show that mechanosensors simulated by the model make it possible to reproduce such experiments in terms of migration bias generated by the substrate anisotropy. Here again, the model provides a biomechanical explanation of this phenomenon, depending on cell-matrix interactions and adhesion maturation rate.

我们开发了一个细胞变形和迁移的原创计算模型,该模型能够解释细胞对环境的敏感性及其适当的适应性。这一细胞模型最终将用于解决组织形态发生问题。因此,它的设计符合四项要求:(1)细胞应能探测和感知环境并做出相应反应;(2)模型应易于参数化,以适应不同的细胞类型;(3)模型应能扩展到三维情况;(4)模拟应足够快,以整合许多相互作用的细胞。模拟主要集中在两个方面:第一,实验观察到的细胞在均质基底上的一般行为,以验证模型。这使我们能够破译细胞迁移的机制,突出粘附寿命的影响及其对牵引力的敏感性;第二,它预测了细胞对各向异性图案基底的敏感性,这与最近发表的实验结果一致。结果表明,该模型模拟的机械传感器可以根据基底各向异性产生的迁移偏差重现此类实验。在此,该模型再次为这种现象提供了一种生物力学解释,它取决于细胞与基质的相互作用和粘附成熟率。
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引用次数: 0
Dynamical systems analysis of a reaction-diffusion SIRS model with optimal control for the COVID-19 spread. 对具有 COVID-19 传播优化控制的反应扩散 SIRS 模型进行动力系统分析。
IF 1.7 4区 医学 Q3 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Pub Date : 2024-11-13 DOI: 10.1080/10255842.2024.2423879
Amer M Salman, Mohd Hafiz Mohd

We examine an SIRS reaction-diffusion model with local dispersal and spatial heterogeneity to study COVID-19 dynamics. Using the operator semigroup approach, we establish the existence of disease-free equilibrium (DFE) and endemic equilibrium (EE), and derive the basic reproduction number, R0. Simulations show that without dispersal, reinfection and limited medical resources problems can cause a plateau in cases. Dispersal and spatial heterogeneity intensify localised outbreaks, while integrated control strategies (vaccination and treatment) effectively reduce infection numbers and epidemic duration. The possibility of reinfection demonstrates the need for adaptable health measures. These insights can guide optimised control strategies for enhanced public health preparedness.

我们研究了一个具有局部扩散和空间异质性的 SIRS 反应扩散模型,以研究 COVID-19 的动态。利用算子半群方法,我们确定了无病平衡(DFE)和地方病平衡(EE)的存在,并推导出基本繁殖数 R0。模拟结果表明,如果没有分散,再感染和有限的医疗资源问题可能会导致病例达到高峰。扩散和空间异质性会加剧局部地区的疫情爆发,而综合控制策略(疫苗接种和治疗)则能有效减少感染人数并缩短疫情持续时间。再感染的可能性表明,需要采取适应性强的卫生措施。这些见解可以指导优化控制策略,加强公共卫生准备。
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引用次数: 0
Exploring the active ingredients and mechanisms of Liujunzi decoction in treating hepatitis B: a study based on network pharmacology, molecular docking, and molecular dynamics simulations. 基于网络药理学、分子对接和分子动力学模拟的研究:探索六君子汤治疗乙型肝炎的有效成分和机制
IF 1.7 4区 医学 Q3 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Pub Date : 2024-11-13 DOI: 10.1080/10255842.2024.2427117
Qing Ma, Wenjun Li, Wenying Wu, Mei Sun

Liujunzi decoction (LJZD) is commonly used to treat hepatitis B virus (HBV), though its active ingredients and mechanisms are not fully known. This study identified core targets and active components of LJZD for treating hepatitis B (HB) through network pharmacology, molecular docking, and molecular dynamics simulation. Screening from databases yielded 533 active components, 2619 targets for LJZD, and 2910 for HB, with 891 intersecting targets. STRING and CytoHubba analyses identified AR and VDR as core targets, with key pathways including PI3K-Akt and MAPK. The findings clarify LJZD's multicomponent, multitarget mechanisms, supporting its clinical application for HB treatment.

六君子汤(LJZD)是治疗乙型肝炎病毒(HBV)的常用药,但其有效成分和机制尚不完全清楚。本研究通过网络药理学、分子对接和分子动力学模拟,确定了六君子汤治疗乙型肝炎(HB)的核心靶点和活性成分。从数据库中筛选出533个活性成分,2619个LJZD靶点,2910个HB靶点,891个交叉靶点。STRING和CytoHubba分析确定AR和VDR为核心靶点,关键通路包括PI3K-Akt和MAPK。这些发现阐明了 LJZD 的多成分、多靶点机制,支持其在 HB 治疗中的临床应用。
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引用次数: 0
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