Pub Date : 2024-04-02DOI: 10.1038/s44318-024-00089-2
K. Kupkova, S. Shetty, Elizabeth A. Hoffman, Stefan Bekiranov, D. Auble
{"title":"Genome-scale chromatin binding dynamics of RNA Polymerase II general transcription machinery components.","authors":"K. Kupkova, S. Shetty, Elizabeth A. Hoffman, Stefan Bekiranov, D. Auble","doi":"10.1038/s44318-024-00089-2","DOIUrl":"https://doi.org/10.1038/s44318-024-00089-2","url":null,"abstract":"","PeriodicalId":507305,"journal":{"name":"The EMBO Journal","volume":"237 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140752619","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-04-02DOI: 10.1038/s44318-024-00072-x
Nabila El Arbi, Ann-Kathrin Schürholz, Marlene U Handl, Alexei Schiffner, Inés Hidalgo Prados, Liese Schnurbusch, Christian Wenzl, Xin'Ai Zhao, Jian Zeng, J. Lohmann, Sebastian Wolf
{"title":"ARGONAUTE10 controls cell fate specification and formative cell divisions in the Arabidopsis root.","authors":"Nabila El Arbi, Ann-Kathrin Schürholz, Marlene U Handl, Alexei Schiffner, Inés Hidalgo Prados, Liese Schnurbusch, Christian Wenzl, Xin'Ai Zhao, Jian Zeng, J. Lohmann, Sebastian Wolf","doi":"10.1038/s44318-024-00072-x","DOIUrl":"https://doi.org/10.1038/s44318-024-00072-x","url":null,"abstract":"","PeriodicalId":507305,"journal":{"name":"The EMBO Journal","volume":"478 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140750764","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2006-08-23Epub Date: 2006-08-10DOI: 10.1038/sj.emboj.7601252
Weiguang Zhong, Songyan Mao, Scott Tobis, Ekaterini Angelis, Maria C Jordan, Kenneth P Roos, Michael C Fishbein, Ignacio Moreno de Alborán, W Robb MacLellan
c-Myc (Myc) is highly expressed in developing embryos where it regulates body size by controlling proliferation but not cell size. However, Myc is also induced in many postmitotic tissues, including adult myocardium, in response to stress where the predominant form of growth is an increase in cell size (hypertrophy) and not number. The function of Myc induction in this setting is unproven. Therefore, to explore Myc's role in hypertrophic growth, we created mice where Myc can be inducibly inactivated, specifically in adult myocardium. Myc-deficient hearts demonstrated attenuated stress-induced hypertrophic growth, secondary to a reduction in cell growth of individual myocytes. To explore the dependence of Myc-induced cell growth on CycD2, we created bigenic mice where Myc can be selectively activated in CycD2-null adult myocardium. Myc-dependent hypertrophic growth and cell cycle reentry is blocked in CycD2-deficient hearts. However, in contrast to Myc-induced DNA synthesis, hypertrophic growth is independent of CycD2-induced Cdk2 activity. These data suggest that Myc is required for a normal hypertrophic response and that its growth-promoting effects are also mediated through a CycD2-dependent pathway.
{"title":"Hypertrophic growth in cardiac myocytes is mediated by Myc through a Cyclin D2-dependent pathway.","authors":"Weiguang Zhong, Songyan Mao, Scott Tobis, Ekaterini Angelis, Maria C Jordan, Kenneth P Roos, Michael C Fishbein, Ignacio Moreno de Alborán, W Robb MacLellan","doi":"10.1038/sj.emboj.7601252","DOIUrl":"https://doi.org/10.1038/sj.emboj.7601252","url":null,"abstract":"<p><p>c-Myc (Myc) is highly expressed in developing embryos where it regulates body size by controlling proliferation but not cell size. However, Myc is also induced in many postmitotic tissues, including adult myocardium, in response to stress where the predominant form of growth is an increase in cell size (hypertrophy) and not number. The function of Myc induction in this setting is unproven. Therefore, to explore Myc's role in hypertrophic growth, we created mice where Myc can be inducibly inactivated, specifically in adult myocardium. Myc-deficient hearts demonstrated attenuated stress-induced hypertrophic growth, secondary to a reduction in cell growth of individual myocytes. To explore the dependence of Myc-induced cell growth on CycD2, we created bigenic mice where Myc can be selectively activated in CycD2-null adult myocardium. Myc-dependent hypertrophic growth and cell cycle reentry is blocked in CycD2-deficient hearts. However, in contrast to Myc-induced DNA synthesis, hypertrophic growth is independent of CycD2-induced Cdk2 activity. These data suggest that Myc is required for a normal hypertrophic response and that its growth-promoting effects are also mediated through a CycD2-dependent pathway.</p>","PeriodicalId":507305,"journal":{"name":"The EMBO Journal","volume":" ","pages":"3869-79"},"PeriodicalIF":11.4,"publicationDate":"2006-08-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1038/sj.emboj.7601252","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"26195299","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2006-04-05Epub Date: 2006-03-16DOI: 10.1038/sj.emboj.7601048
Gerlind Sulzenbacher, Stéphane Canaan, Yann Bordat, Olivier Neyrolles, Gustavo Stadthagen, Véronique Roig-Zamboni, Jean Rauzier, Damien Maurin, Françoise Laval, Mamadou Daffé, Christian Cambillau, Brigitte Gicquel, Yves Bourne, Mary Jackson
Cell envelope lipids play an important role in the pathogenicity of mycobacteria, but the mechanisms by which they are transported to the outer membrane of these prokaryotes are largely unknown. Here, we provide evidence that LppX is a lipoprotein required for the translocation of complex lipids, the phthiocerol dimycocerosates (DIM), to the outer membrane of Mycobacterium tuberculosis. Abolition of DIM transport following disruption of the lppX gene is accompanied by an important attenuation of the virulence of the tubercle bacillus. The crystal structure of LppX unveils an U-shaped beta-half-barrel dominated by a large hydrophobic cavity suitable to accommodate a single DIM molecule. LppX shares a similar fold with the periplasmic molecular chaperone LolA and the outer membrane lipoprotein LolB, which are involved in the localization of lipoproteins to the outer membrane of Gram-negative bacteria. Based on the structure and although an indirect participation of LppX in DIM transport cannot yet be ruled out, we propose LppX to be the first characterized member of a family of structurally related lipoproteins that carry lipophilic molecules across the mycobacterial cell envelope.
{"title":"LppX is a lipoprotein required for the translocation of phthiocerol dimycocerosates to the surface of Mycobacterium tuberculosis.","authors":"Gerlind Sulzenbacher, Stéphane Canaan, Yann Bordat, Olivier Neyrolles, Gustavo Stadthagen, Véronique Roig-Zamboni, Jean Rauzier, Damien Maurin, Françoise Laval, Mamadou Daffé, Christian Cambillau, Brigitte Gicquel, Yves Bourne, Mary Jackson","doi":"10.1038/sj.emboj.7601048","DOIUrl":"https://doi.org/10.1038/sj.emboj.7601048","url":null,"abstract":"<p><p>Cell envelope lipids play an important role in the pathogenicity of mycobacteria, but the mechanisms by which they are transported to the outer membrane of these prokaryotes are largely unknown. Here, we provide evidence that LppX is a lipoprotein required for the translocation of complex lipids, the phthiocerol dimycocerosates (DIM), to the outer membrane of Mycobacterium tuberculosis. Abolition of DIM transport following disruption of the lppX gene is accompanied by an important attenuation of the virulence of the tubercle bacillus. The crystal structure of LppX unveils an U-shaped beta-half-barrel dominated by a large hydrophobic cavity suitable to accommodate a single DIM molecule. LppX shares a similar fold with the periplasmic molecular chaperone LolA and the outer membrane lipoprotein LolB, which are involved in the localization of lipoproteins to the outer membrane of Gram-negative bacteria. Based on the structure and although an indirect participation of LppX in DIM transport cannot yet be ruled out, we propose LppX to be the first characterized member of a family of structurally related lipoproteins that carry lipophilic molecules across the mycobacterial cell envelope.</p>","PeriodicalId":507305,"journal":{"name":"The EMBO Journal","volume":" ","pages":"1436-44"},"PeriodicalIF":11.4,"publicationDate":"2006-04-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1038/sj.emboj.7601048","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"25908846","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2006-02-22Epub Date: 2006-02-09DOI: 10.1038/sj.emboj.7600975
Anne-Sophie Berthiau, Krassimir Yankulov, Amadou Bah, Emmanuelle Revardel, Pierre Luciano, Raymund J Wellinger, Vincent Géli, Eric Gilson
The Tbf1 and Reb1 proteins are present in yeast subtelomeric regions. We establish in this work that they inhibit telomerase-dependent lengthening of telomere. For example, tethering the N-terminal domain of Tbf1 and Reb1 in a subtelomeric region shortens that telomere proportionally to the number of domains bound. We further identified a 90 amino-acid long sequence within the N-terminal domain of Tbf1 that is necessary but not sufficient for its length regulation properties. The role of the subtelomeric factors in telomere length regulation is antagonized by TEL1 and does not correlate with a global telomere derepression. We show that the absence of TEL1 induces an alteration in the structure of telomeric chromatin, as defined biochemically by an increased susceptibility to nucleases and a greater heterogeneity of products. We propose that the absence of TEL1 modifies the organization of the telomeres, which allows Tbf1 and Reb1 to cis-inhibit telomerase. The involvement of subtelomeric factors in telomere length regulation provides a possible mechanism for the chromosome-specific length setting observed at yeast and human telomeres.
{"title":"Subtelomeric proteins negatively regulate telomere elongation in budding yeast.","authors":"Anne-Sophie Berthiau, Krassimir Yankulov, Amadou Bah, Emmanuelle Revardel, Pierre Luciano, Raymund J Wellinger, Vincent Géli, Eric Gilson","doi":"10.1038/sj.emboj.7600975","DOIUrl":"https://doi.org/10.1038/sj.emboj.7600975","url":null,"abstract":"<p><p>The Tbf1 and Reb1 proteins are present in yeast subtelomeric regions. We establish in this work that they inhibit telomerase-dependent lengthening of telomere. For example, tethering the N-terminal domain of Tbf1 and Reb1 in a subtelomeric region shortens that telomere proportionally to the number of domains bound. We further identified a 90 amino-acid long sequence within the N-terminal domain of Tbf1 that is necessary but not sufficient for its length regulation properties. The role of the subtelomeric factors in telomere length regulation is antagonized by TEL1 and does not correlate with a global telomere derepression. We show that the absence of TEL1 induces an alteration in the structure of telomeric chromatin, as defined biochemically by an increased susceptibility to nucleases and a greater heterogeneity of products. We propose that the absence of TEL1 modifies the organization of the telomeres, which allows Tbf1 and Reb1 to cis-inhibit telomerase. The involvement of subtelomeric factors in telomere length regulation provides a possible mechanism for the chromosome-specific length setting observed at yeast and human telomeres.</p>","PeriodicalId":507305,"journal":{"name":"The EMBO Journal","volume":" ","pages":"846-56"},"PeriodicalIF":11.4,"publicationDate":"2006-02-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1038/sj.emboj.7600975","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"25847026","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 1985-07-01DOI: 10.1002/j.1460-2075.1985.tb03837.x
Y Hiromi, Y Hotta
We have identified four mutations affecting the actin III isoform in the indirect flight muscles (IFM) of Drosophila. One mutation does not produce any protein product, and three direct the synthesis of electrophoretic variants of actin. Complementation tests and recombination mapping indicate that all mutations are alleles of an actin gene at chromosomal band 88F (act88F gene). The effect of these mutations is restricted to the IFM. We conclude that the act88F gene is expressed only in the IFM to encode actin III, which is its major isoform. In two of the actin mutants, heat shock proteins are constitutively expressed in the IFM. Genetic evidence strongly suggest that this anomaly is primarily caused by the mutations in the act88F structural gene.
{"title":"Actin gene mutations in Drosophila; heat shock activation in the indirect flight muscles.","authors":"Y Hiromi, Y Hotta","doi":"10.1002/j.1460-2075.1985.tb03837.x","DOIUrl":"https://doi.org/10.1002/j.1460-2075.1985.tb03837.x","url":null,"abstract":"<p><p>We have identified four mutations affecting the actin III isoform in the indirect flight muscles (IFM) of Drosophila. One mutation does not produce any protein product, and three direct the synthesis of electrophoretic variants of actin. Complementation tests and recombination mapping indicate that all mutations are alleles of an actin gene at chromosomal band 88F (act88F gene). The effect of these mutations is restricted to the IFM. We conclude that the act88F gene is expressed only in the IFM to encode actin III, which is its major isoform. In two of the actin mutants, heat shock proteins are constitutively expressed in the IFM. Genetic evidence strongly suggest that this anomaly is primarily caused by the mutations in the act88F structural gene.</p>","PeriodicalId":507305,"journal":{"name":"The EMBO Journal","volume":" ","pages":"1681-7"},"PeriodicalIF":11.4,"publicationDate":"1985-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1002/j.1460-2075.1985.tb03837.x","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"25834739","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}