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Resistance to KRAS inhibition in advanced non-small cell lung cancer 晚期非小细胞肺癌患者对 KRAS 抑制剂的抗药性
Pub Date : 2024-05-23 DOI: 10.3389/fonc.2024.1357898
K. Sreter, Maria Joana Pereira Catarata, Maximilian von Laffert, Armin Frille
Lung cancer remains the leading cause of cancer death globally. More than 50% of new cases are diagnosed in an advanced or metastatic stage, thus contributing to the poor survival of such patients. Mutations in the KRAS (Kirsten rat sarcoma virus) gene occur in nearly a third of lung adenocarcinoma and have for decades been deemed an ‘undruggable’ target. Yet, in recent years, a growing number of small molecules, such as the GTPase inhibitors, has been investigated in clinical trials of lung cancer patients harboring KRAS mutations, yielding promising results with improved outcomes. Currently, there are only two approved targeted therapies (adagrasib and sotorasib) for advanced or metastatic KRAS-mutated NSCLC from the second-line setting onwards. In this narrative review, we will focus on KRAS, its molecular basis, the role of its co-mutations, clinical evidence for its inhibition, putative mutation to resistance, and future strategies to overcome resistance to KRAS inhibition.
肺癌仍然是全球癌症死亡的主要原因。50%以上的新病例确诊时已是晚期或转移期,因此这类患者的生存率很低。近三分之一的肺腺癌发生 KRAS(克氏大鼠肉瘤病毒)基因突变,几十年来一直被认为是 "不可药治 "的靶点。然而,近年来,越来越多的小分子药物(如 GTPase 抑制剂)已在携带 KRAS 基因突变的肺癌患者的临床试验中进行了研究,并取得了改善预后的良好结果。目前,只有两种获批的靶向疗法(adagrasib 和 sotorasib)可用于晚期或转移性 KRAS 突变 NSCLC 的二线治疗。在这篇叙述性综述中,我们将重点介绍 KRAS、其分子基础、共突变的作用、抑制 KRAS 的临床证据、假定突变导致的耐药性以及克服 KRAS 抑制耐药性的未来策略。
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引用次数: 0
Deep learning driven diagnosis of malignant soft tissue tumors based on dual-modal ultrasound images and clinical indexes 基于双模态超声图像和临床指标的深度学习驱动的恶性软组织肿瘤诊断
Pub Date : 2024-05-23 DOI: 10.3389/fonc.2024.1361694
Haiqin Xie, Yudi Zhang, Licong Dong, Heng Lv, Xuechen Li, Chenyang Zhao, Yun Tian, Lu Xie, Wangjie Wu, Qi Yang, Li Liu, Desheng Sun, Li Qiu, Linlin Shen, Yusen Zhang
Soft tissue tumors (STTs) are benign or malignant superficial neoplasms arising from soft tissues throughout the body with versatile pathological types. Although Ultrasonography (US) is one of the most common imaging tools to diagnose malignant STTs, it still has several drawbacks in STT diagnosis that need improving.The study aims to establish this deep learning (DL) driven Artificial intelligence (AI) system for predicting malignant STTs based on US images and clinical indexes of the patients.We retrospectively enrolled 271 malignant and 462 benign masses to build the AI system using 5-fold validation. A prospective dataset of 44 malignant masses and 101 benign masses was used to validate the accuracy of system. A multi-data fusion convolutional neural network, named ultrasound clinical soft tissue tumor net (UC-STTNet), was developed to combine gray scale and color Doppler US images and clinic features for malignant STTs diagnosis. Six radiologists (R1-R6) with three experience levels were invited for reader study.The AI system achieved an area under receiver operating curve (AUC) value of 0.89 in the retrospective dataset. The diagnostic performance of the AI system was higher than that of one of the senior radiologists (AUC of AI vs R2: 0.89 vs. 0.84, p=0.022) and all of the intermediate and junior radiologists (AUC of AI vs R3, R4, R5, R6: 0.89 vs 0.75, 0.81, 0.80, 0.63; p <0.01). The AI system also achieved an AUC of 0.85 in the prospective dataset. With the assistance of the system, the diagnostic performances and inter-observer agreement of the radiologists was improved (AUC of R3, R5, R6: 0.75 to 0.83, 0.80 to 0.85, 0.63 to 0.69; p<0.01).The AI system could be a useful tool in diagnosing malignant STTs, and could also help radiologists improve diagnostic performance.
软组织肿瘤(Soft tissue tumors,STTs)是指发生于全身软组织的良性或恶性浅表肿瘤,病理类型多样。本研究旨在建立一个深度学习(DL)驱动的人工智能(AI)系统,根据 US 图像和患者的临床指标预测恶性 STT。为了验证系统的准确性,我们使用了一个包含 44 个恶性肿块和 101 个良性肿块的前瞻性数据集。开发了一个多数据融合卷积神经网络,命名为超声临床软组织肿瘤网络(UC-STTNet),将灰度和彩色多普勒 US 图像与临床特征相结合,用于恶性 STTs 诊断。该人工智能系统在回顾性数据集中的接收者工作曲线下面积(AUC)值达到了 0.89。人工智能系统的诊断性能高于其中一位资深放射科医生(人工智能与 R2 相比的 AUC 值:0.89 与 0.84 相比,p=0.022)以及所有中级和初级放射科医生(人工智能与 R3、R4、R5、R6 相比的 AUC 值:0.89 与 0.75、0.81、0.80、0.63 相比;p <0.01)。在前瞻性数据集中,人工智能系统的 AUC 也达到了 0.85。在该系统的帮助下,放射科医生的诊断性能和观察者之间的一致性得到了改善(R3、R5、R6 的 AUC:0.75 至 0.83、0.80 至 0.85、0.63 至 0.69;p<0.01)。
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引用次数: 0
Continuous response despite reduced dose of trametinib as single agent in an adolescent with a relapsed disseminated pediatric low-grade glioma KIAA1549-BRAF fusion positive: a case report and review of the literature 复发的播散性小儿低级别胶质瘤(KIAA1549-BRAF融合阳性)青少年在减少曲美替尼单药剂量后仍持续应答:病例报告和文献综述
Pub Date : 2024-05-23 DOI: 10.3389/fonc.2024.1381354
Serafin Castellano-Damaso, Felisa Vázquez-Gómez, Jose Luis Moreno-Carrasco, Begoña Arce, Pedro Borrego, Alvaro Lassaletta
Dissemination in pediatric low-grade glioma may occur in about 4%–10% of patients according to retrospective cohort studies. Due to its low incidence, there is no consensus on treatment for these patients. According to the constitutional activation of the MAPK/ERK pathway in these tumors, MEK inhibitors such as trametinib have been used successfully in the relapsed setting. Skin toxicity is frequent in patients receiving trametinib, normally mild to moderate, but sometimes severe, needing to discontinue the drug, limiting the efficacy in the tumor. There is not much information in the literature regarding whether reducing the dose of trametinib is able to maintain efficacy while, at the same time, decreasing toxicity. Here, we present an adolescent, with severe skin toxicity, whose trametinib dose was reduced by 50% and efficacy on the tumor continued while skin toxicity significantly decreased.
根据回顾性队列研究,约有4%-10%的小儿低级别胶质瘤患者会发生扩散。由于发病率较低,对这些患者的治疗方法尚未达成共识。由于这些肿瘤中的MAPK/ERK通路被激活,MEK抑制剂(如曲美替尼)已被成功用于复发治疗。接受曲美替尼治疗的患者经常会出现皮肤毒性,通常为轻度至中度,但有时也会出现严重的皮肤毒性,需要停药,从而限制了对肿瘤的疗效。关于减少曲美替尼的剂量是否能在保持疗效的同时减少毒性,文献中的相关信息并不多。在此,我们介绍了一名患有严重皮肤毒性的青少年患者,在将曲美替尼的剂量减少50%后,其肿瘤疗效得以保持,而皮肤毒性则显著降低。
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引用次数: 0
An interpretable clinical ultrasound-radiomics combined model for diagnosis of stage I cervical cancer 用于诊断 I 期宫颈癌的可解释临床超声-放射组学联合模型
Pub Date : 2024-05-23 DOI: 10.3389/fonc.2024.1353780
Xianyue Yang, Chuanfen Gao, Nian Sun, X. Qin, Xiaoling Liu, Chaoxue Zhang
The purpose of this retrospective study was to establish a combined model based on ultrasound (US)-radiomics and clinical factors to predict patients with stage I cervical cancer (CC) before surgery.A total of 209 CC patients who had cervical lesions found by transvaginal sonography (TVS) from the First Affiliated Hospital of Anhui Medical University were retrospectively reviewed, patients were divided into the training set (n = 146) and internal validation set (n = 63), and 52 CC patients from Anhui Provincial Maternity and Child Health Hospital and Nanchong Central Hospital were taken as the external validation set. The clinical independent predictors were selected by univariate and multivariate logistic regression analyses. US-radiomics features were extracted from US images. After selecting the most significant features by univariate analysis, Spearman’s correlation analysis, and the least absolute shrinkage and selection operator (LASSO) algorithm, six machine learning (ML) algorithms were used to build the radiomics model. Next, the ability of the clinical, US-radiomics, and clinical US-radiomics combined model was compared to diagnose stage I CC. Finally, the Shapley additive explanations (SHAP) method was used to explain the contribution of each feature.Long diameter of the cervical lesion (L) and squamous cell carcinoma-associated antigen (SCCa) were independent clinical predictors of stage I CC. The eXtreme Gradient Boosting (Xgboost) model performed the best among the six ML radiomics models, with area under the curve (AUC) values in the training, internal validation, and external validation sets being 0.778, 0.751, and 0.751, respectively. In the final three models, the combined model based on clinical features and rad-score showed good discriminative power, with AUC values in the training, internal validation, and external validation sets being 0.837, 0.828, and 0.839, respectively. The decision curve analysis validated the clinical utility of the combined nomogram. The SHAP algorithm illustrates the contribution of each feature in the combined model.We established an interpretable combined model to predict stage I CC. This non-invasive prediction method may be used for the preoperative identification of patients with stage I CC.
这项回顾性研究的目的是建立一个基于超声(US)放射组学和临床因素的联合模型,以预测宫颈癌(CC)I期患者的术前情况。研究回顾性分析了安徽医科大学第一附属医院经阴道超声检查(TVS)发现宫颈病变的209例CC患者,将患者分为训练集(146例)和内部验证集(63例),并将安徽省妇幼保健院和南充市中心医院的52例CC患者作为外部验证集。通过单变量和多变量逻辑回归分析筛选出临床独立预测因子。从 US 图像中提取 US 放射组学特征。通过单变量分析、斯皮尔曼相关性分析和最小绝对收缩和选择算子(LASSO)算法筛选出最重要的特征后,使用六种机器学习(ML)算法建立放射组学模型。接下来,比较了临床模型、US-放射组学模型和临床US-放射组学组合模型诊断I期CC的能力。宫颈病变长径(L)和鳞状细胞癌相关抗原(SCCa)是 I 期 CC 的独立临床预测指标。在六个ML放射组学模型中,eXtreme Gradient Boosting(Xgboost)模型表现最佳,其训练集、内部验证集和外部验证集的曲线下面积(AUC)值分别为0.778、0.751和0.751。在最后的三个模型中,基于临床特征和 rad-score 的组合模型显示出良好的判别能力,训练集、内部验证集和外部验证集的 AUC 值分别为 0.837、0.828 和 0.839。决策曲线分析验证了组合提名图的临床实用性。我们建立了一个可解释的综合模型来预测 I 期 CC。这种无创预测方法可用于术前识别 I 期 CC 患者。
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引用次数: 0
Editorial: Novel therapeutic targets of gastric carcinogenesis: from basic research to drug development and clinical application 社论:胃癌发生的新型治疗靶点:从基础研究到药物开发和临床应用
Pub Date : 2024-05-23 DOI: 10.3389/fonc.2024.1431520
Chenchen Niu, Dong Ren, Bella Lingjia Liu
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引用次数: 0
Blood cell indices and inflammation-related markers with kidney cancer risk: a large-population prospective analysis in UK Biobank 与肾癌风险有关的血细胞指数和炎症相关标记物:英国生物数据库的大样本前瞻性分析
Pub Date : 2024-05-23 DOI: 10.3389/fonc.2024.1366449
Qingliu He, Chengcheng Wei, Li Cao, Pu Zhang, Zhuang Wei, Fangzhen Cai
Kidney cancer is a prevalent malignancy with an increasing incidence worldwide. Blood cell indices and inflammation-related markers have shown huge potential as biomarkers for predicting cancer incidences, but that is not clear in kidney cancer. Our study aims to investigate the correlations of blood cell indices and inflammation-related markers with kidney cancer risk.We performed a population-based cohort prospective analysis using data from the UK Biobank. A total of 466,994 participants, free of kidney cancer at baseline, were included in the analysis. The hazard ratios (HRs) and 95% confidence intervals (CIs) for kidney cancer risk were calculated using Cox proportional hazards regression models. Restricted cubic spline models were used to investigate nonlinear longitudinal associations. Stratified analyses were used to identify high-risk populations. The results were validated through sensitivity analyses.During a mean follow-up of 12.4 years, 1,710 of 466,994 participants developed kidney cancer. The Cox regression models showed that 13 blood cell indices and four inflammation-related markers were associated with kidney cancer incidence. The restricted cubic spline models showed non-linear relationships with kidney cancer. Finally, combined with stratified and sensitivity analyses, we found that the mean corpuscular hemoglobin concentration (MCHC), red blood cell distribution width (RDW), platelet distribution width (PDW), systemic immune-inflammation index (SII), and product of platelet count and neutrophil count (PPN) were related to enhanced kidney cancer risk with stable results.Our findings identified that three blood cell indices (MCHC, RDW, and PDW) and two inflammation-related markers (SII and PPN) were independent risk factors for the incidence of kidney cancer. These indexes may serve as potential predictors for kidney cancer and aid in the development of targeted screening strategies for at-risk individuals.
肾癌是一种常见的恶性肿瘤,其发病率在全球范围内呈上升趋势。血细胞指数和炎症相关标志物作为预测癌症发病率的生物标志物已显示出巨大的潜力,但在肾癌中的应用尚不明确。我们的研究旨在调查血细胞指数和炎症相关标记物与肾癌风险的相关性。我们利用英国生物库的数据进行了基于人群的队列前瞻性分析,共纳入了 466994 名基线时未患肾癌的参与者。肾癌风险的危险比(HRs)和95%置信区间(CIs)是通过Cox比例危险回归模型计算得出的。限制立方样条模型用于研究非线性纵向关联。分层分析用于确定高风险人群。在平均 12.4 年的随访期间,466994 名参与者中有 1710 人罹患肾癌。Cox回归模型显示,13种血细胞指数和4种炎症相关标记物与肾癌发病率有关。限制性立方样条模型显示出与肾癌的非线性关系。最后,结合分层分析和敏感性分析,我们发现平均血红蛋白浓度(MCHC)、红细胞分布宽度(RDW)、血小板分布宽度(PDW)、全身免疫炎症指数(SII)以及血小板计数与中性粒细胞计数的乘积(PPN)与肾癌风险的增加有关,且结果稳定。我们的研究结果表明,三个血细胞指数(MCHC、RDW 和 PDW)和两个炎症相关标记物(SII 和 PPN)是肾癌发病率的独立风险因素。这些指数可作为肾癌的潜在预测指标,有助于为高危人群制定有针对性的筛查策略。
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引用次数: 0
Impact of metformin on melanoma: a meta-analysis and systematic review 二甲双胍对黑色素瘤的影响:一项荟萃分析和系统综述
Pub Date : 2024-05-23 DOI: 10.3389/fonc.2024.1399693
Hua Feng, Shuxian Shang, Kun Chen, Xuan Sun, Xueping Yue
There is evidence of a modest reduction in skin cancer risk among metformin users. However, no studies have further examined the effects of metformin on melanoma survival and safety outcomes. This study aimed to quantitatively summarize any influence of metformin on the overall survival (OS) and immune-related adverse effects (irAEs) in melanoma patients.Selection criteria: The inclusion criteria were designed based on the PICOS principles. Information sources: PubMed, EMBASE, Cochrane Library, and Web of Science were searched for relevant literature published from the inception of these databases until November 2023 using ‘Melanoma’ and ‘Metformin’ as keywords. Survival outcomes were OS, progression-free survival (PFS), recurrence-free survival (RFS), and mortality; the safety outcome was irAEs. Risk of bias and data Synthesis: The Cochrane tool for assessing the risk of bias in randomized trial 2 (RoB2) and methodological index for non-randomized studies (MINORS) were selected to assess the risk of bias. The Cochrane Q and I2 statistics based on Stata 15.1 SE were used to test the heterogeneity among all studies. Funnel plot, Egger regression, and Begg tests were used to evaluate publication bias. The leave-one-out method was selected as the sensitivity analysis tool.A total of 12 studies were included, involving 111,036 melanoma patients. The pooled HR for OS was 0.64 (95% CI [0.42, 1.00], p = 0.004, I2 = 73.7%), HR for PFS was 0.89 (95% CI [0.70, 1.12], p = 0.163, I2 = 41.4%), HR for RFS was 0.62 (95% CI [0.26, 1.48], p = 0.085, I2 = 66.3%), and HR for mortality was 0.53 (95% CI [0.46, 0.63], p = 0.775, I2 = 0.0%). There was no significant difference in irAEs incidence (OR = 1.01; 95% CI [0.42, 2.41]; p = 0.642) between metformin and no metformin groups.The improvement in overall survival of melanoma patients with metformin may indirectly result from its diverse biological targets and beneficial effects on multiple systemic diseases. While we could not demonstrate a specific improvement in the survival of melanoma patients, the combined benefits and safety of metformin for patients taking the drug are worthy of recognition.https://www.crd.york.ac.uk/PROSPERO/, identifier CRD42024518182.
有证据表明,二甲双胍使用者患皮肤癌的风险略有降低。然而,目前还没有研究进一步探讨二甲双胍对黑色素瘤生存率和安全性结果的影响。本研究旨在定量总结二甲双胍对黑色素瘤患者总生存期(OS)和免疫相关不良反应(irAEs)的影响:纳入标准根据 PICOS 原则设计。信息来源以 "黑色素瘤 "和 "二甲双胍 "为关键词,检索了 PubMed、EMBASE、Cochrane Library 和 Web of Science 等数据库从建立之初到 2023 年 11 月期间发表的相关文献。生存期结果为OS、无进展生存期(PFS)、无复发生存期(RFS)和死亡率;安全性结果为irAEs。偏倚风险与数据综合:评估偏倚风险时选用了Cochrane随机试验2偏倚风险评估工具(RoB2)和非随机研究方法学指数(MINORS)。使用基于 Stata 15.1 SE 的 Cochrane Q 和 I2 统计量来检验所有研究之间的异质性。漏斗图、Egger 回归和 Begg 检验用于评估发表偏倚。共纳入12项研究,涉及111036名黑色素瘤患者。汇总的OS HR为0.64(95% CI [0.42,1.00],p = 0.004,I2 = 73.7%),PFS HR为0.89(95% CI [0.70,1.12],p = 0.163,I2 = 41.4%),RFS 的 HR 为 0.62(95% CI [0.26,1.48],p = 0.085,I2 = 66.3%),死亡率的 HR 为 0.53(95% CI [0.46,0.63],p = 0.775,I2 = 0.0%)。二甲双胍组和未使用二甲双胍组的irAEs发生率无明显差异(OR = 1.01;95% CI [0.42,2.41];p = 0.642)。虽然我们无法证明二甲双胍对黑色素瘤患者生存率的具体改善作用,但二甲双胍对服药患者的综合益处和安全性是值得肯定的。https://www.crd.york.ac.uk/PROSPERO/,标识符为 CRD42024518182。
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引用次数: 0
Efficacy of anti-PD-1 monotherapy for recurrent or metastatic olfactory neuroblastoma 抗PD-1单药治疗复发性或转移性嗅神经母细胞瘤的疗效
Pub Date : 2024-05-23 DOI: 10.3389/fonc.2024.1379013
Y. Hoshi, T. Enokida, Shingo Tamura, Torahiko Nakashima, S. Okano, T. Fujisawa, Masanobu Sato, A. Wada, Hideki Tanaka, N. Takeshita, N. Tanaka, Ryutaro Onaga, T. Kishida, H. Uryu, Shingo Sakashita, Takahiro Asakage, Makoto Tahara
Olfactory neuroblastoma (ONB) is a rare malignant tumor of the head and neck. Due to its rarity, standard systemic therapy for this condition has yet to be established. In particular, the use of immune checkpoint inhibitors (ICIs) for the recurrent or metastatic (R/M) ONB population remains unclear.We retrospectively evaluated 11 patients with R/M ONB who received any systemic chemotherapy at two Japanese institutions (National Cancer Center Hospital East and Kyushu Medical Center) between January 2002 and March 2022 and analyzed outcomes by use of anti-PD-1 antibody (nivolumab or pembrolizumab) monotherapy.Of the 11 patients, 6 received ICI (ICI-containing treatment group) and the remaining 5 were treated with systemic therapy but not including ICI (ICI-non-containing treatment group). Overall survival (OS) was significantly longer in the ICI-containing group (median OS: not reached vs. 6.4 months, log-rank p-value: 0.035). The fraction of ICI systemic therapy in the entire treatment period of this group reached 85.9%. Four patients (66.7%) in the ICI-containing treatment group experienced immune-related adverse events (irAE), with grades of 1/2. No irAE of grade 3 or more was seen, and no patient required interruption or discontinuation of treatment due to toxicity.ICI monotherapy appears to be effective and to contribute to prolonged survival in R/M ONB.
嗅神经母细胞瘤(ONB)是一种罕见的头颈部恶性肿瘤。由于其罕见性,该病的标准系统疗法尚未确立。我们回顾性评估了2002年1月至2022年3月期间在日本两家机构(国立癌症中心东医院和九州医疗中心)接受过任何系统化疗的11例R/M ONB患者,并通过使用抗PD-1抗体(nivolumab或pembrolizumab)单药治疗分析了疗效。在11名患者中,6人接受了ICI治疗(含ICI治疗组),其余5人接受了全身治疗,但不包括ICI(不含ICI治疗组)。含 ICI 治疗组的总生存期(OS)明显更长(中位 OS:未达 6.4 个月 vs. 6.4 个月,log-rank p 值:0.035)。该组患者在整个治疗期间接受 ICI 系统治疗的比例达到 85.9%。含 ICI 治疗组中有四名患者(66.7%)出现了免疫相关不良事件(irAE),级别为 1/2。ICI单药治疗似乎有效,并有助于延长R/M ONB的生存期。
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引用次数: 0
The long noncoding RNA SUMO1P3 as urinary biomarker for monitoring bladder cancer progression 长非编码 RNA SUMO1P3 作为监测膀胱癌进展的尿液生物标记物
Pub Date : 2024-05-23 DOI: 10.3389/fonc.2024.1325157
Silvia Galbiati, A. Bettiga, G. Colciago, C. Senti, Francesco Trevisani, Giulia Villa, Ilaria Marzinotto, Michele Ghidini, R. Passalacqua, Francesco Montorsi, A. Salonia, R. Vago
Urothelial Bladder Cancer (BC) is the ninth most common cancer worldwide. It is classified into Non Muscle Invasive (NMIBC) and Muscle Invasive Bladder Cancer (MIBC), which are characterized by frequent recurrences and progression rate, respectively. The diagnosis and monitoring are obtained through invasive methods as cystoscopy and post-surgery biopsies. Thus, a panel of biomarkers able to discriminate BC based on grading or staging represents a significant step forward in the patients’ workup. In this perspective, long non-coding RNAs (lncRNAs) are emerged as reliable candidates as potential biomarker given their specific and regulated expression. In the present work we propose two lncRNAs, the Small Ubiquitin Modifier 1 pseudogene 3 (SUMO1P3), a poorly characterized pseudogene, and the Urothelial Carcinoma Associated 1 (UCA1) as candidates to monitor the BC progression.This study was a retrospective trial enrolling NMIBC and MIBC patients undergoing surgical intervention: the expression of the lncRNA SUMO1P3 and UCA1 was evaluated in urine from 113 subjects (cases and controls). The receiver operating characteristic curve analysis was used to evaluate the performance of single or combined biomarkers in discriminating cases from controls.SUMO1P3 and UCA1 expression in urine was able to significantly discriminate low grade NMIBC, healthy control and benign prostatic hyperplasia subjects versus high grade NMIBC and MIBC patients. We also demonstrated that miR-320a, which binds SUMO1P3, was reduced in high grade NMIBC and MIBC patients and the SUMO1P3/miR-320a ratio was used to differentiate cases versus controls, showing a statistically significant power. Finally, we provided an automated method of RNA extraction coupled to ddPCR analysis in a perspective of clinical application.We have shown that the lncRNA SUMO1P3 is increased in urine from patients with high grade NMIBC and MIBC and that it is likely to be good candidate to predict bladder cancer progression if used alone or in combination with UCA1 or with miRNA320a.
尿路上皮膀胱癌(BC)是全球第九大常见癌症。膀胱癌分为非肌层浸润性膀胱癌(NMIBC)和肌层浸润性膀胱癌(MIBC),其特点分别是复发率和进展率高。诊断和监测是通过膀胱镜检查和手术后活检等侵入性方法进行的。因此,能够根据分级或分期对 BC 进行鉴别的生物标志物小组代表着患者的工作向前迈进了一大步。从这个角度来看,长非编码 RNA(lncRNA)因其表达的特异性和调节性而成为潜在生物标志物的可靠候选者。在本研究中,我们提出了两种lncRNA,即小泛素修饰因子1假基因3(SUMO1P3)(一种特征不明显的假基因)和尿路上皮癌相关1(UCA1),作为监测BC进展的候选指标。本研究是一项回顾性试验,纳入了接受手术干预的NMIBC和MIBC患者:对113名受试者(病例和对照组)尿液中lncRNA SUMO1P3和UCA1的表达进行了评估。SUMO1P3和UCA1在尿液中的表达能够显著区分低级别NMIBC、健康对照和良性前列腺增生受试者与高级别NMIBC和MIBC患者。我们还证明,与 SUMO1P3 结合的 miR-320a 在高级别 NMIBC 和 MIBC 患者中的表达量减少,SUMO1P3/miR-320a 比值可用于区分病例和对照组,在统计学上具有显著的说服力。最后,我们从临床应用的角度提供了一种自动提取 RNA 并进行 ddPCR 分析的方法。我们的研究表明,在高级别 NMIBC 和 MIBC 患者的尿液中,lncRNA SUMO1P3 增高,如果单独使用或与 UCA1 或 miRNA320a 结合使用,它很可能成为预测膀胱癌进展的良好候选物。
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引用次数: 0
Exploiting tertiary lymphoid structures gene signature to evaluate tumor microenvironment infiltration and immunotherapy response in colorectal cancer 利用三级淋巴结构基因特征评估结直肠癌的肿瘤微环境浸润和免疫疗法反应
Pub Date : 2024-05-23 DOI: 10.3389/fonc.2024.1383096
Zhu Xu, Qin Wang, Yiyao Zhang, Xiaolan Li, Mei Wang, Yuhong Zhang, Yaxin Pei, Kezhen Li, Man Yang, Liping Luo, Chuan Wu, Weidong Wang
Tertiary lymphoid structures (TLS) is a particular component of tumor microenvironment (TME). However, its biological mechanisms in colorectal cancer (CRC) have not yet been understood. We desired to reveal the TLS gene signature in CRC and evaluate its role in prognosis and immunotherapy response.The data was sourced from The Cancer Genome Atlas (TCGA) and the Gene Expression Omnibus (GEO) databases. Based on TLS-related genes (TRGs), the TLS related subclusters were identified through unsupervised clustering. The TME between subclusters were evaluated by CIBERSORT and xCell. Subsequently, developing a risk model and conducting external validation. Integrating risk score and clinical characteristics to create a comprehensive nomogram. Further analyses were conducted to screen TLS-related hub genes and explore the relationship between hub genes, TME, and biological processes, using random forest analysis, enrichment and variation analysis, and competing endogenous RNA (ceRNA) network analysis. Multiple immunofluorescence (mIF) and immunohistochemistry (IHC) were employed to characterize the existence of TLS and the expression of hub gene.Two subclusters that enriched or depleted in TLS were identified. The two subclusters had distinct prognoses, clinical characteristics, and tumor immune infiltration. We established a TLS-related prognostic risk model including 14 genes and validated its predictive power in two external datasets. The model’s AUC values for 1-, 3-, and 5-year overall survival (OS) were 0.704, 0.737, and 0.746. The low-risk group had a superior survival rate, more abundant infiltration of immune cells, lower tumor immune dysfunction and exclusion (TIDE) score, and exhibited better immunotherapy efficacy. In addition, we selected the top important features within the model: VSIG4, SELL and PRRX1. Enrichment analysis showed that the hub genes significantly affected signaling pathways related to TLS and tumor progression. The ceRNA network: PRRX1-miRNA (hsa-miR-20a-5p, hsa-miR-485–5p) -lncRNA has been discovered. Finally, IHC and mIF results confirmed that the expression level of PRRX1 was markedly elevated in the TLS- CRC group.We conducted a study to thoroughly describe TLS gene signature in CRC. The TLS-related risk model was applicable for prognostic prediction and assessment of immunotherapy efficacy. The TLS-hub gene PRRX1, which had the potential to function as an immunomodulatory factor of TLS, could be a therapeutic target for CRC.
三级淋巴结构(TLS)是肿瘤微环境(TME)的一个特殊组成部分。然而,它在结直肠癌(CRC)中的生物学机制还不清楚。我们希望揭示 CRC 中的 TLS 基因特征,并评估其在预后和免疫治疗反应中的作用。数据来源于癌症基因组图谱(TCGA)和基因表达总库(GEO)数据库。数据来源于癌症基因组图谱(TCGA)和基因表达全集(GEO)数据库。基于TLS相关基因(TRGs),通过无监督聚类确定了TLS相关亚群。通过 CIBERSORT 和 xCell 对子簇之间的 TME 进行了评估。随后,建立风险模型并进行外部验证。整合风险评分和临床特征,创建综合提名图。利用随机森林分析、富集和变异分析以及竞争性内源性 RNA(ceRNA)网络分析,进一步分析筛选 TLS 相关的枢纽基因,探索枢纽基因、TME 和生物过程之间的关系。采用多重免疫荧光(mIF)和免疫组织化学(IHC)分析了TLS的存在和枢纽基因的表达。这两个亚群具有不同的预后、临床特征和肿瘤免疫浸润。我们建立了一个包括14个基因的TLS相关预后风险模型,并在两个外部数据集中验证了其预测能力。该模型对1年、3年和5年总生存期(OS)的AUC值分别为0.704、0.737和0.746。低风险组的生存率更高,免疫细胞浸润更丰富,肿瘤免疫功能障碍和排斥(TIDE)评分更低,免疫治疗效果更好。此外,我们还选出了模型中最重要的特征:VSIG4、SELL 和 PRRX1。富集分析表明,这些枢纽基因对与 TLS 和肿瘤进展相关的信号通路有显著影响。ceRNA 网络:发现了PRRX1-miRNA(hsa-miR-20a-5p、hsa-miR-485-5p)-lncRNA网络。最后,IHC 和 mIF 结果证实,在 TLS- CRC 组中,PRRX1 的表达水平明显升高。TLS相关风险模型适用于预后预测和免疫疗法疗效评估。TLS枢纽基因PRRX1有可能作为TLS的免疫调节因子,成为CRC的治疗靶点。
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Frontiers in Oncology
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