Pub Date : 2024-09-01Epub Date: 2024-08-31DOI: 10.1016/j.limno.2024.126201
Jesús Torres-Huesca , Jazmín Santillán , Yislem Beltrán , Rafael A. López-Martínez , Miroslav Macek , Luisa I. Falcón , Martín Merino-Ibarra , Patricia M. Valdespino-Castillo , Jesús T. Martínez-Díaz , Javier Alcocer , Rocío J. Alcántara-Hernández
The structure and diversity of prokaryotic assemblages in inland waters are strongly related to their habitat. Yet, there is a lack of integrative studies surveying them in different compartments in tropical lakes. This study estimated the diversity and composition of prokaryotic assemblages in sediments, microbialites, and water column in the tropical warm monomictic Lake Alchichica and identified the most representative phylotypes while thermally stratified. The 16S rRNA gene survey showed a distinctive prokaryotic assemblage for each compartment, with 60–78 % of the phylotypes being unique to each one. Sediments accounted for the major prokaryotic diversity in the lake, with chemoorganotrophic bacteria and sulphate reducers as major biogeochemical components. Microbialites showed a high abundance of oxygenic and anoxygenic phototrophs, as well as organotrophs. The prokaryoplancton in the water column was mainly composed of picocyanobacteria and Flavobacteria in the epilimnion, shifting to a high diversity of anaerobic microorganisms in the hypolimnion. These water column assemblages were significantly correlated to pH, ORP, DO, and nutrient concentration. This study shows an integral view of the prokaryotic assemblages in a deep tropical lake related to physicochemical characteristics, from their diversity to their biogeochemical implications, suggesting the role of lake sediments as a possible microbial seed bank.
{"title":"Diversity and structure of prokaryotic assemblages in a thermally stratified tropical lake","authors":"Jesús Torres-Huesca , Jazmín Santillán , Yislem Beltrán , Rafael A. López-Martínez , Miroslav Macek , Luisa I. Falcón , Martín Merino-Ibarra , Patricia M. Valdespino-Castillo , Jesús T. Martínez-Díaz , Javier Alcocer , Rocío J. Alcántara-Hernández","doi":"10.1016/j.limno.2024.126201","DOIUrl":"10.1016/j.limno.2024.126201","url":null,"abstract":"<div><p>The structure and diversity of prokaryotic assemblages in inland waters are strongly related to their habitat. Yet, there is a lack of integrative studies surveying them in different compartments in tropical lakes. This study estimated the diversity and composition of prokaryotic assemblages in sediments, microbialites, and water column in the tropical warm monomictic Lake Alchichica and identified the most representative phylotypes while thermally stratified. The 16S rRNA gene survey showed a distinctive prokaryotic assemblage for each compartment, with 60–78 % of the phylotypes being unique to each one. Sediments accounted for the major prokaryotic diversity in the lake, with chemoorganotrophic bacteria and sulphate reducers as major biogeochemical components. Microbialites showed a high abundance of oxygenic and anoxygenic phototrophs, as well as organotrophs. The prokaryoplancton in the water column was mainly composed of picocyanobacteria and Flavobacteria in the epilimnion, shifting to a high diversity of anaerobic microorganisms in the hypolimnion. These water column assemblages were significantly correlated to pH, ORP, DO, and nutrient concentration. This study shows an integral view of the prokaryotic assemblages in a deep tropical lake related to physicochemical characteristics, from their diversity to their biogeochemical implications, suggesting the role of lake sediments as a possible microbial seed bank.</p></div>","PeriodicalId":51110,"journal":{"name":"Limnologica","volume":"108 ","pages":"Article 126201"},"PeriodicalIF":2.0,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142149799","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-01Epub Date: 2024-08-22DOI: 10.1016/j.limno.2024.126198
Márcio José Silveira , Vanessa de Carvalho Harthman
Siltation has been aggravated by climate changes due more frequent and intense rain events, resulting in greater amounts of sediment in water bodies. These changes have impacted drastically submerged macrophytes growth by light limitations. Despite biological invasions are among the major threats to freshwater biodiversity and invasive submerged aquatic plants also has been impacted by these changes. The main aim of this study was to investigate through an experimental study as two globally invasive freshwater macrophytes, Hydrilla verticillata and Egeria densa, respond to the changes in water transparency caused by siltation. We performed a factorial experiment to test the effect of turbidity increase caused by siltation on growth of these two species. For this, we included sand or mud sediment in containers to obtain without and with siltation treatments. Then both species were planted at the two treatments and grown for 30 days. The main results of our study were that there was a shift in the dominance at the performance of some biological traits between the species, where H. verticillata showed better development of these biological traits than E. densa at treatment with siltation, and the reverse was also true, where E. densa had better performance in without siltation treatment. In summary, our results demonstrated that if the increase in water siltation continues at the current rate, a greater performance of H. verticillata can also be expected and, consequently, the impacts on aquatic biodiversity will also increased. These results may be helpful in predicting the effects of siltation on the development of two globally invasive freshwater submerged macrophytes. Moreover, could increase the ability of managers environmental to predict the future development of ecosystems in relation to invasions by non-native species.
淤积因气候变化而加剧,因为降雨更加频繁和剧烈,导致水体中的沉积物量增加。由于光照的限制,这些变化极大地影响了水下大型植物的生长。尽管生物入侵是淡水生物多样性面临的主要威胁之一,但入侵的沉水植物也受到了这些变化的影响。本研究的主要目的是通过实验研究两种全球入侵的淡水大型水草--蛭水草(Hydrilla verticillata)和鳗鲡(Egeria densa)--对淤积造成的水体透明度变化的反应。我们进行了一个因子实验,测试淤积导致的浊度增加对这两种植物生长的影响。为此,我们在容器中加入了沙子或泥沙,以获得无淤积处理和有淤积处理。然后将这两个物种分别种植在两个处理中,并生长 30 天。我们研究的主要结果是,两个物种之间在某些生物性状表现上的优势发生了变化,在有淤积的处理中,H. verticillata 的这些生物性状发展得比 E. densa 好,反之亦然,E. densa 在无淤积处理中表现得更好。总之,我们的研究结果表明,如果水体淤积继续以目前的速度增加,预计 H. verticillata 的表现也会更好,因此对水生生物多样性的影响也会增加。这些结果可能有助于预测淤积对两种全球入侵淡水沉水大型藻类发展的影响。此外,还能提高环境管理者预测生态系统未来发展与非本地物种入侵关系的能力。
{"title":"Evidence that siltation aggravated by climate change can shift the dominance of two globally invasive freshwater macrophytes","authors":"Márcio José Silveira , Vanessa de Carvalho Harthman","doi":"10.1016/j.limno.2024.126198","DOIUrl":"10.1016/j.limno.2024.126198","url":null,"abstract":"<div><p>Siltation has been aggravated by climate changes due more frequent and intense rain events, resulting in greater amounts of sediment in water bodies. These changes have impacted drastically submerged macrophytes growth by light limitations. Despite biological invasions are among the major threats to freshwater biodiversity and invasive submerged aquatic plants also has been impacted by these changes. The main aim of this study was to investigate through an experimental study as two globally invasive freshwater macrophytes, <em>Hydrilla verticillata</em> and <em>Egeria densa,</em> respond to the changes in water transparency caused by siltation. We performed a factorial experiment to test the effect of turbidity increase caused by siltation on growth of these two species. For this, we included sand or mud sediment in containers to obtain without and with siltation treatments. Then both species were planted at the two treatments and grown for 30 days. The main results of our study were that there was a shift in the dominance at the performance of some biological traits between the species, where <em>H. verticillata</em> showed better development of these biological traits than <em>E. densa</em> at treatment with siltation, and the reverse was also true, where <em>E. densa</em> had better performance in without siltation treatment. In summary, our results demonstrated that if the increase in water siltation continues at the current rate, a greater performance of <em>H. verticillata</em> can also be expected and, consequently, the impacts on aquatic biodiversity will also increased. These results may be helpful in predicting the effects of siltation on the development of two globally invasive freshwater submerged macrophytes. Moreover, could increase the ability of managers environmental to predict the future development of ecosystems in relation to invasions by non-native species.</p></div>","PeriodicalId":51110,"journal":{"name":"Limnologica","volume":"108 ","pages":"Article 126198"},"PeriodicalIF":2.0,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142087154","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-01Epub Date: 2024-07-06DOI: 10.1016/j.limno.2024.126184
Ekaterina S. Konopleva , Ilya V. Vikhrev , Olesya A. Chelpanovskaya , Gennady A. Dvoryankin , Pavel A. Futoran , Mikhail Yu. Gofarov , Alexander V. Kondakov , Ivan N. Bolotov
Four populations of freshwater pearl mussel Margaritifera margaritifera were studied at lower sections of three river basins of the eastern part of the Onega Peninsula, Northern European Russia: the Bol’shaya Syarta, the Ust’-Yaren’ga and the Lopshen’ga (including Kamenny Stream). One of the populations from the Lopshen’ga River was discovered for the first time. Here we present preliminary data on the population status of M. margaritifera, its host fishes and glochidia infestation in the studied river basins. Living juvenile mussels and fishes infested by glochidia were recorded only in two waterbodies, i.e., the Bol’shaya Syarta and Ust’-Yaren’ga rivers. The pearl mussel population from the Bol’shaya Syarta River seems to represent the most prosperous among studied ones. The average density of visible mussels was small in the lower section of the river, but the proportion of young mussels was rather high (33.1 %) and intensity of glochidia infection reached 865 glochidia per fish. The highest average density was recorded in the pearl mussel population from the Kamenny Stream, Lopshen’ga River basin. However, only one juvenile mussel and none of host fishes infested by glochidia were recorded in this watercourse that may indicate the population aging and decrease of reproduction. Morphological analyses revealed significant differences between four studied populations of M. margaritifera towards the shell convexity index (SCI) and shell elongation index (SEI). In all studied basins, salmonid fishes were also infested by other parasites, mainly flatworms and their cysts. This factor may negatively impact the salmonid host fish populations that require monitoring of the current situation. The data obtained and future studies will allow to develop a system for protecting and monitoring of populations of a rare species such as the freshwater pearl mussel M. margaritifera.
{"title":"Population status and host fishes of the freshwater pearl mussel in the eastern part of the Onega Peninsula, Northern European Russia","authors":"Ekaterina S. Konopleva , Ilya V. Vikhrev , Olesya A. Chelpanovskaya , Gennady A. Dvoryankin , Pavel A. Futoran , Mikhail Yu. Gofarov , Alexander V. Kondakov , Ivan N. Bolotov","doi":"10.1016/j.limno.2024.126184","DOIUrl":"10.1016/j.limno.2024.126184","url":null,"abstract":"<div><p>Four populations of freshwater pearl mussel <em>Margaritifera margaritifera</em> were studied at lower sections of three river basins of the eastern part of the Onega Peninsula, Northern European Russia: the Bol’shaya Syarta, the Ust’-Yaren’ga and the Lopshen’ga (including Kamenny Stream). One of the populations from the Lopshen’ga River was discovered for the first time. Here we present preliminary data on the population status of <em>M. margaritifera</em>, its host fishes and glochidia infestation in the studied river basins. Living juvenile mussels and fishes infested by glochidia were recorded only in two waterbodies, i.e., the Bol’shaya Syarta and Ust’-Yaren’ga rivers. The pearl mussel population from the Bol’shaya Syarta River seems to represent the most prosperous among studied ones. The average density of visible mussels was small in the lower section of the river, but the proportion of young mussels was rather high (33.1 %) and intensity of glochidia infection reached 865 glochidia per fish. The highest average density was recorded in the pearl mussel population from the Kamenny Stream, Lopshen’ga River basin. However, only one juvenile mussel and none of host fishes infested by glochidia were recorded in this watercourse that may indicate the population aging and decrease of reproduction. Morphological analyses revealed significant differences between four studied populations of <em>M. margaritifera</em> towards the shell convexity index (SCI) and shell elongation index (SEI). In all studied basins, salmonid fishes were also infested by other parasites, mainly flatworms and their cysts. This factor may negatively impact the salmonid host fish populations that require monitoring of the current situation. The data obtained and future studies will allow to develop a system for protecting and monitoring of populations of a rare species such as the freshwater pearl mussel <em>M. margaritifera</em>.</p></div>","PeriodicalId":51110,"journal":{"name":"Limnologica","volume":"107 ","pages":"Article 126184"},"PeriodicalIF":2.0,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141630770","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-01Epub Date: 2024-08-02DOI: 10.1016/j.limno.2024.126187
Rei Itsukushima
Understanding biota distribution patterns is essential for ecosystem conservation and restoration. In addition to biogeography, the distribution patterns of aquatic organisms that inhabit rivers vary longitudinally along river networks. Although longitudinal changes in distribution patterns in aquatic organisms along river networks have been studied in single river basins, it is crucial to understand these patterns at a regional ecological scale for broad-scale ecosystem conservation. This study aimed to elucidate the longitudinal distribution patterns of fish fauna and their correlation with environmental factors in several watersheds within the East Setouchi Ecological Region, renowned for its rich freshwater fish diversity in the Japanese archipelago. Data were obtained for 118 species across 10 watersheds and 85 sites, and the surveyed sites were classified into four longitudinal groups based on the similarity of the fish fauna. The lowest group comprised river estuaries, abundant in brackish-water fish, comprising primarily Gobiidae species. In lower watershed areas with low agricultural land and forest cover but high urbanization, all fish species selected as indicators were non-native. Upstream areas with a high percentage of agricultural land featured a mix of native Cyprinidae and non-native species such as Micropterus salmoides and Rhodeus ocellatus ocellatus. The most upstream groups, marked by significantly greater elevations and bed slopes, exclusively comprised native species as indicator species. Analyzing the longitudinal distribution patterns of fish fauna at multiple sites within the same ecological region enabled us to choose endemic fish species as indicators and identify important species for conservation. Additionally, the selection of sites characterized by significant urbanization and strong anthropogenic influences, along with the selection of non-native species as indicators, underscores the urgency of conserving native organisms in these areas, calling for continuous monitoring.
{"title":"Longitudinal distribution of fish fauna and characteristics of indicator species in the East Seto Inland Ecological Region within the Japanese Archipelago","authors":"Rei Itsukushima","doi":"10.1016/j.limno.2024.126187","DOIUrl":"10.1016/j.limno.2024.126187","url":null,"abstract":"<div><p>Understanding biota distribution patterns is essential for ecosystem conservation and restoration. In addition to biogeography, the distribution patterns of aquatic organisms that inhabit rivers vary longitudinally along river networks. Although longitudinal changes in distribution patterns in aquatic organisms along river networks have been studied in single river basins, it is crucial to understand these patterns at a regional ecological scale for broad-scale ecosystem conservation. This study aimed to elucidate the longitudinal distribution patterns of fish fauna and their correlation with environmental factors in several watersheds within the East Setouchi Ecological Region, renowned for its rich freshwater fish diversity in the Japanese archipelago. Data were obtained for 118 species across 10 watersheds and 85 sites, and the surveyed sites were classified into four longitudinal groups based on the similarity of the fish fauna. The lowest group comprised river estuaries, abundant in brackish-water fish, comprising primarily Gobiidae species. In lower watershed areas with low agricultural land and forest cover but high urbanization, all fish species selected as indicators were non-native. Upstream areas with a high percentage of agricultural land featured a mix of native Cyprinidae and non-native species such as <em>Micropterus salmoides</em> and <em>Rhodeus ocellatus ocellatus</em>. The most upstream groups, marked by significantly greater elevations and bed slopes, exclusively comprised native species as indicator species. Analyzing the longitudinal distribution patterns of fish fauna at multiple sites within the same ecological region enabled us to choose endemic fish species as indicators and identify important species for conservation. Additionally, the selection of sites characterized by significant urbanization and strong anthropogenic influences, along with the selection of non-native species as indicators, underscores the urgency of conserving native organisms in these areas, calling for continuous monitoring.</p></div>","PeriodicalId":51110,"journal":{"name":"Limnologica","volume":"107 ","pages":"Article 126187"},"PeriodicalIF":2.0,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S0075951124000409/pdfft?md5=4c8ecbd4e51b1a26138876ac77128c25&pid=1-s2.0-S0075951124000409-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141939243","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-01Epub Date: 2024-07-24DOI: 10.1016/j.limno.2024.126186
Yunzhao Liu , Le Liang , Jiajun Wu , Xianfu Zhao , Jing Li , Ting Fang , Yangyang Liang , Zhongguan Jiang
When assessing microplastics (MPs) in freshwater ecosystems, previous studies have primarily focused on natural rivers and lakes, with limited attention to urban water source areas. Sediments, recording the steady process of MPs accumulation during a long period of time, can act as an important sink for MPs. In this study, we investigated the distribution, characteristics and pollution evaluation of MP contaminants in sediments of a water supply reservoir of Hefei City (the Dafangying Reservoir). Meanwhile, the differences of MP concentrations in sediments in rural and urban areas were also compared. Our results detected five shapes, seven colors and six polymer types of MPs in sediments of the Dafangying Reservoir. Polystyrene, polyethylene and polypropylene were the most abundance types of MPs identified. The average MPs abundance of sediments in rural areas was 83.20 ± 32.99 n/100 g dry weight (d.w.), and 182.67 ± 72.21 n/100 g (d.w.) in urban areas. The total MP concentrations were significantly higher in sediments of urban sites than that in rural sites, which can be ascribed to more complex and diverse MP sources triggered by intensive anthropogenic activity in cities. Specifically, we also demonstrated significantly higher microbead abundance in urban sites, which may result from the widespread use of microbead in personal care products. Given the complexity and diversity of MPs in urban areas, we exhibited a relatively higher abundance of MPs in the Dafangying Reservoir than that in other rural larger reservoirs. According to the index of geoaccumulation, the sedimentary MPs were assessed as moderately polluted. Our study enriches valuable data on the distribution of MPs contaminants in water supply reservoir, and provides theoretical references for MPs control and management in reservoir ecosystems.
{"title":"Microplastic pollutants in sediments from a water supply reservoir: Spatial heterogeneity in abundance, characteristics and pollution evaluation","authors":"Yunzhao Liu , Le Liang , Jiajun Wu , Xianfu Zhao , Jing Li , Ting Fang , Yangyang Liang , Zhongguan Jiang","doi":"10.1016/j.limno.2024.126186","DOIUrl":"10.1016/j.limno.2024.126186","url":null,"abstract":"<div><p>When assessing microplastics (MPs) in freshwater ecosystems, previous studies have primarily focused on natural rivers and lakes, with limited attention to urban water source areas. Sediments, recording the steady process of MPs accumulation during a long period of time, can act as an important sink for MPs. In this study, we investigated the distribution, characteristics and pollution evaluation of MP contaminants in sediments of a water supply reservoir of Hefei City (the Dafangying Reservoir). Meanwhile, the differences of MP concentrations in sediments in rural and urban areas were also compared. Our results detected five shapes, seven colors and six polymer types of MPs in sediments of the Dafangying Reservoir. Polystyrene, polyethylene and polypropylene were the most abundance types of MPs identified. The average MPs abundance of sediments in rural areas was 83.20 ± 32.99 n/100 g dry weight (d.w.), and 182.67 ± 72.21 n/100 g (d.w.) in urban areas. The total MP concentrations were significantly higher in sediments of urban sites than that in rural sites, which can be ascribed to more complex and diverse MP sources triggered by intensive anthropogenic activity in cities. Specifically, we also demonstrated significantly higher microbead abundance in urban sites, which may result from the widespread use of microbead in personal care products. Given the complexity and diversity of MPs in urban areas, we exhibited a relatively higher abundance of MPs in the Dafangying Reservoir than that in other rural larger reservoirs. According to the index of geoaccumulation, the sedimentary MPs were assessed as moderately polluted. Our study enriches valuable data on the distribution of MPs contaminants in water supply reservoir, and provides theoretical references for MPs control and management in reservoir ecosystems.</p></div>","PeriodicalId":51110,"journal":{"name":"Limnologica","volume":"107 ","pages":"Article 126186"},"PeriodicalIF":2.0,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141847184","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-01Epub Date: 2024-06-17DOI: 10.1016/j.limno.2024.126183
Brendan T. Higgins , Morgan Thomas , Peyton Goodling , Alan E. Wilson
Elevated geosmin concentrations in drinking water reservoirs can lead to customer complaints and increased treatment costs for utilities. Use of molecular approaches, like qPCR and targeted amplicon sequencing, can help with prediction and preventive measures, but many of the primers targeting the geosmin synthase gene suffer from limited coverage of taxa or poor specificity. Here, a set of primers (CGeo1F/R) were developed that had high specificity for geosmin synthase in cyanobacteria without the use of probes. When tested on samples from three drinking water reservoirs with elevated geosmin levels, these primers amplified the geosmin synthase gene in seven cyanobacterial genera, including Dolichospermum, Aphanizomenon, Cylindrospermum, Planktothrix, Nostoc, Coelosphaerium, and Tychonema. These primers exhibited acceptable amplification efficiency (∼ 90 %) and a linear amplification range of 6 × 101–6 × 105 copies per ml in lake water. Within the limited set of samples used to evaluate these primers, a good correlation was observed (r = 0.8) between abundance of geosmin synthase and geosmin concentration. When compared to some existing, well-utilized primers in the literature, these new primers had better specificity and amplification properties, and thus may prove valuable to other researchers.
{"title":"Development of a new primer tool for quantification and identification of geosmin-producing cyanobacteria in drinking water reservoirs","authors":"Brendan T. Higgins , Morgan Thomas , Peyton Goodling , Alan E. Wilson","doi":"10.1016/j.limno.2024.126183","DOIUrl":"https://doi.org/10.1016/j.limno.2024.126183","url":null,"abstract":"<div><p>Elevated geosmin concentrations in drinking water reservoirs can lead to customer complaints and increased treatment costs for utilities. Use of molecular approaches, like qPCR and targeted amplicon sequencing, can help with prediction and preventive measures, but many of the primers targeting the geosmin synthase gene suffer from limited coverage of taxa or poor specificity. Here, a set of primers (CGeo1F/R) were developed that had high specificity for geosmin synthase in cyanobacteria without the use of probes. When tested on samples from three drinking water reservoirs with elevated geosmin levels, these primers amplified the geosmin synthase gene in seven cyanobacterial genera, including <em>Dolichospermum, Aphanizomenon, Cylindrospermum, Planktothrix, Nostoc, Coelosphaerium,</em> and <em>Tychonema</em>. These primers exhibited acceptable amplification efficiency (∼ 90 %) and a linear amplification range of 6 × 10<sup>1</sup>–6 × 10<sup>5</sup> copies per ml in lake water. Within the limited set of samples used to evaluate these primers, a good correlation was observed (r = 0.8) between abundance of geosmin synthase and geosmin concentration. When compared to some existing, well-utilized primers in the literature, these new primers had better specificity and amplification properties, and thus may prove valuable to other researchers.</p></div>","PeriodicalId":51110,"journal":{"name":"Limnologica","volume":"107 ","pages":"Article 126183"},"PeriodicalIF":1.7,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141429875","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-01Epub Date: 2024-07-14DOI: 10.1016/j.limno.2024.126185
Natanael José Silva, Fernando Miranda Lansac-Tôha, Fábio Amodeo Lansac-Tôha
Environmental, spatial, and temporal factors play an important role in beta diversity in metacommunities. Most studies are based only on species identity, and little is known about how these factors affect multiple facets of diversity. Here, we assessed the effect of local (chemical, physical, and hydrological), spatial, and temporal variables on taxonomic, functional, and phylogenetic beta diversity in a zooplankton metacommunity in two urban rivers. The partition of the beta diversity into its components - replacement and abundance difference - was performed using the Bray-Curtis index. Distance-based redundancy analysis and variation partitioning were used to assess the importance of predictors for the beta diversity. We found that beta diversity was high and mostly influenced by environmental factors and, to a lesser extent, by spatial and temporal factors in all facets. The abundance difference was the dominant component of beta diversity in all facets and was mainly explained by the environment and space, while replacement had a low explanation, in general, and was more related to temporal factors. These results reflect anthropic pressures in these environments and suggest that a multifaceted approach to beta diversity provides complementary information about the processes structuring the metacommunity and about conservation strategies of these impacted environments.
{"title":"Environmental, spatial, and temporal drivers of multiple facets of beta diversity from a zooplankton metacommunity in two tropical urbanized rivers","authors":"Natanael José Silva, Fernando Miranda Lansac-Tôha, Fábio Amodeo Lansac-Tôha","doi":"10.1016/j.limno.2024.126185","DOIUrl":"10.1016/j.limno.2024.126185","url":null,"abstract":"<div><p>Environmental, spatial, and temporal factors play an important role in beta diversity in metacommunities. Most studies are based only on species identity, and little is known about how these factors affect multiple facets of diversity. Here, we assessed the effect of local (chemical, physical, and hydrological), spatial, and temporal variables on taxonomic, functional, and phylogenetic beta diversity in a zooplankton metacommunity in two urban rivers. The partition of the beta diversity into its components - replacement and abundance difference - was performed using the Bray-Curtis index. Distance-based redundancy analysis and variation partitioning were used to assess the importance of predictors for the beta diversity. We found that beta diversity was high and mostly influenced by environmental factors and, to a lesser extent, by spatial and temporal factors in all facets. The abundance difference was the dominant component of beta diversity in all facets and was mainly explained by the environment and space, while replacement had a low explanation, in general, and was more related to temporal factors. These results reflect anthropic pressures in these environments and suggest that a multifaceted approach to beta diversity provides complementary information about the processes structuring the metacommunity and about conservation strategies of these impacted environments.</p></div>","PeriodicalId":51110,"journal":{"name":"Limnologica","volume":"107 ","pages":"Article 126185"},"PeriodicalIF":2.0,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141843223","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-01Epub Date: 2024-05-14DOI: 10.1016/j.limno.2024.126171
Oyunchuluun Yadamsuren , Narangarvuu Dashdondog , Tamir Puntsag , Tamir Gantugs , Yadamsuren Gerelchuluun , John C. Morse
The quality and quantity of Mongolia’s water resources are being degraded by ineffective water-management. There is no widely accepted biomonitoring system for Mongolia, only hydrological and chemical monitoring, with limited relevance for living organisms. Therefore, this study has aimed to develop a Mongolian-specific multimetric index and biocriteria applicable to the biological assessment of Mongolian streams. A total of 66 stream sites in northern Mongolia were selected representing different gradients of land use. In total, 30 candidate metrics representing the following four categories of ecological condition were used: diversity/richness, composition/abundance, trophic status, and tolerance/sensitivity. The resulting candidate metrics were evaluated using a stepwise procedure for metric variability, redundancy, sensitivity, and responsiveness to environmental gradients. According to the Mann-Whitney U test, 21 metrics showed statistically significant differences between the reference and impaired groups (P < 0.05). A metric showed interquartile overlap and thirteen metrics were redundant based on Spearman’s correlation analysis (r > 0.8). Finally, five metrics were retained and included in the multimetric index system and all clearly distinguished reference and impaired sites. Then the range of the multimetric index score (numerical value 0–1) was subdivided into five categories (reference/excellent ≥ 0.8, good < 0.8 to ≥ 0.6, moderate < 0.6 to ≥ 0.4, poor < 0.4 to ≥ 0.2, severe < 0.2) related to level of impairment. Thus, this multimetric index successfully distinguished reference from impaired conditions, demonstrating its applicability for northern Mongolian stream assessment. Hence, the Mongolian-specific Macroinvertebrate Multimetric Index (MMI-MON) can be used as a principal assessment tool for assessing waterways in northern Mongolia and possibly throughout the country, detecting future changes and providing valuable information for land-use management and conservation of aquatic ecosystems of Mongolia.
{"title":"Initial development of a benthic macroinvertebrate multimetric index for monitoring the ecological integrity of northern Mongolian streams","authors":"Oyunchuluun Yadamsuren , Narangarvuu Dashdondog , Tamir Puntsag , Tamir Gantugs , Yadamsuren Gerelchuluun , John C. Morse","doi":"10.1016/j.limno.2024.126171","DOIUrl":"10.1016/j.limno.2024.126171","url":null,"abstract":"<div><p>The quality and quantity of Mongolia’s water resources are being degraded by ineffective water-management. There is no widely accepted biomonitoring system for Mongolia, only hydrological and chemical monitoring, with limited relevance for living organisms. Therefore, this study has aimed to develop a Mongolian-specific multimetric index and biocriteria applicable to the biological assessment of Mongolian streams. A total of 66 stream sites in northern Mongolia were selected representing different gradients of land use. In total, 30 candidate metrics representing the following four categories of ecological condition were used: diversity/richness, composition/abundance, trophic status, and tolerance/sensitivity. The resulting candidate metrics were evaluated using a stepwise procedure for metric variability, redundancy, sensitivity, and responsiveness to environmental gradients. According to the Mann-Whitney U test, 21 metrics showed statistically significant differences between the reference and impaired groups (P < 0.05). A metric showed interquartile overlap and thirteen metrics were redundant based on Spearman’s correlation analysis (r > 0.8). Finally, five metrics were retained and included in the multimetric index system and all clearly distinguished reference and impaired sites. Then the range of the multimetric index score (numerical value 0–1) was subdivided into five categories (reference/excellent ≥ 0.8, good < 0.8 to ≥ 0.6, moderate < 0.6 to ≥ 0.4, poor < 0.4 to ≥ 0.2, severe < 0.2) related to level of impairment. Thus, this multimetric index successfully distinguished reference from impaired conditions, demonstrating its applicability for northern Mongolian stream assessment. Hence, the Mongolian-specific Macroinvertebrate Multimetric Index (MMI-MON) can be used as a principal assessment tool for assessing waterways in northern Mongolia and possibly throughout the country, detecting future changes and providing valuable information for land-use management and conservation of aquatic ecosystems of Mongolia.</p></div>","PeriodicalId":51110,"journal":{"name":"Limnologica","volume":"106 ","pages":"Article 126171"},"PeriodicalIF":1.7,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141045533","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-01Epub Date: 2024-04-16DOI: 10.1016/j.limno.2024.126170
Ana Cláudia Garcia Barboza , Victor Tagliacollo , Giuliano Buzá Jacobucci
Global warming has changed climate patterns worldwide causing an increase of extreme weather conditions that have altered annual seasonal hydrological regimes. These extreme climate-driven shifts modify habitat availability and can influence freshwater communities in disruptive ways. Our study investigates how changes in annual seasonal hydrological regimes affect the community structure and the Functional Feeding Groups (FFG) of benthic macroinvertebrates in two Brazilian biodiversity hotspots, the Brazilian Tropical Savannas (a.k.a., Cerrado) and Atlantic Forest biomes. We investigate whether annual variation in precipitation between biomes influence composition, richness, and abundance of benthic macroinvertebrates and their proportions of FFG. We demonstrate that differences in annual precipitation rates affect the composition and abundance, but not richness of benthic macroinvertebrates. Changes in community structure are related to changes in annual precipitation, which modify stream variables. Our findings suggest that annual seasonal changes in hydrological precipitation modify benthic macroinvertebrate communities, especially in Cerrado, where dry seasons are more pronounced. Therefore, annual changes in precipitation rates may disrupt the benthic macroinvertebrate communities in tropical savannas, potentially leading to biodiversity loss.
{"title":"Influence of seasonal hydrological regimes on benthic macroinvertebrates in two the Brazilian biodiversity hotspots","authors":"Ana Cláudia Garcia Barboza , Victor Tagliacollo , Giuliano Buzá Jacobucci","doi":"10.1016/j.limno.2024.126170","DOIUrl":"https://doi.org/10.1016/j.limno.2024.126170","url":null,"abstract":"<div><p>Global warming has changed climate patterns worldwide causing an increase of extreme weather conditions that have altered annual seasonal hydrological regimes. These extreme climate-driven shifts modify habitat availability and can influence freshwater communities in disruptive ways. Our study investigates how changes in annual seasonal hydrological regimes affect the community structure and the Functional Feeding Groups (FFG) of benthic macroinvertebrates in two Brazilian biodiversity hotspots, the Brazilian Tropical Savannas (a.k.a., Cerrado) and Atlantic Forest biomes. We investigate whether annual variation in precipitation between biomes influence composition, richness, and abundance of benthic macroinvertebrates and their proportions of FFG. We demonstrate that differences in annual precipitation rates affect the composition and abundance, but not richness of benthic macroinvertebrates. Changes in community structure are related to changes in annual precipitation, which modify stream variables. Our findings suggest that annual seasonal changes in hydrological precipitation modify benthic macroinvertebrate communities, especially in Cerrado, where dry seasons are more pronounced. Therefore, annual changes in precipitation rates may disrupt the benthic macroinvertebrate communities in tropical savannas, potentially leading to biodiversity loss.</p></div>","PeriodicalId":51110,"journal":{"name":"Limnologica","volume":"106 ","pages":"Article 126170"},"PeriodicalIF":1.7,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140646871","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-01Epub Date: 2024-05-16DOI: 10.1016/j.limno.2024.126172
Francesca Vallefuoco , Magdalena Vanek , Roberta Bottarin , Alberto Scotti
Habitat diversity plays a crucial role in shaping the structure and distribution of benthic macroinvertebrate communities. However, few studies have investigated the concurrent effects of such drivers operating at different spatial scales in mountain streams. Here, we assessed which environmental factors at different spatial scales, related to stream/river type and substrate, influence the diversity of benthic macroinvertebrate assemblages in mountain streams and rivers. Within the framework of the aquatic investigations of the Biodiversity Monitoring South Tyrol (BMS) – a newly-established, regional-based, long-term biodiversity monitoring program – benthic macroinvertebrates and a set of environmental factors describing water quality, stream/river hydromorphology and in-stream habitat characteristics were collected and analysed. The variation in total density, taxonomic richness, Shannon evenness and % Ephemeroptera–Plecoptera–Trichoptera taxa of stream benthic macroinvertebrates was assessed at multi-scale habitat levels, in 48 sampling sites across the mountainous region of the Autonomous Province of Bolzano/Bozen (Italy). The effects of stream/river type, substrates and different environmental factors on community composition of benthic macroinvertebrates were quantified, using a stepfoward Redundancy Analysis (RDA) and generalized additive models (GAMs). In addition, we performed an Indicator Value analysis to detect taxa that were significantly associated with a specific substrate and/or stream/river type. Overall, we observed significant differences in benthic biological metrics among both stream/river and substrate types. We also found at least one indicator taxa for each stream/river type, with environmental factors acting at reach and large-spatial scale – temperature, stream channel stability, elevation – being the key drivers in shaping macroinvertebrate distribution patterns in the analysed mountain rivers. While significant differences in macroinvertebrate community structures were found among substrates, the influence of stream/river type conditions was particularly evident. Apart from ranking environmental variables worth including in a long-term aquatic biodiversity monitoring program in mountain areas, our study provides a baseline for practical applications. For instance, depending on the desired outcome of habitat heterogeneity restoration, it can suggest the optimal scale (landscape vs. reach vs. patch) for prioritizing in-field interventions.
{"title":"Quantification of large-spatial scale and in-stream factors affecting the structure of benthic macroinvertebrate communities in mountain streams","authors":"Francesca Vallefuoco , Magdalena Vanek , Roberta Bottarin , Alberto Scotti","doi":"10.1016/j.limno.2024.126172","DOIUrl":"10.1016/j.limno.2024.126172","url":null,"abstract":"<div><p>Habitat diversity plays a crucial role in shaping the structure and distribution of benthic macroinvertebrate communities. However, few studies have investigated the concurrent effects of such drivers operating at different spatial scales in mountain streams. Here, we assessed which environmental factors at different spatial scales, related to stream/river type and substrate, influence the diversity of benthic macroinvertebrate assemblages in mountain streams and rivers. Within the framework of the aquatic investigations of the Biodiversity Monitoring South Tyrol (BMS) – a newly-established, regional-based, long-term biodiversity monitoring program – benthic macroinvertebrates and a set of environmental factors describing water quality, stream/river hydromorphology and in-stream habitat characteristics were collected and analysed. The variation in total density, taxonomic richness, Shannon evenness and % Ephemeroptera–Plecoptera–Trichoptera taxa of stream benthic macroinvertebrates was assessed at multi-scale habitat levels, in 48 sampling sites across the mountainous region of the Autonomous Province of Bolzano/Bozen (Italy). The effects of stream/river type, substrates and different environmental factors on community composition of benthic macroinvertebrates were quantified, using a stepfoward Redundancy Analysis (RDA) and generalized additive models (GAMs). In addition, we performed an Indicator Value analysis to detect taxa that were significantly associated with a specific substrate and/or stream/river type. Overall, we observed significant differences in benthic biological metrics among both stream/river and substrate types. We also found at least one indicator taxa for each stream/river type, with environmental factors acting at reach and large-spatial scale – temperature, stream channel stability, elevation – being the key drivers in shaping macroinvertebrate distribution patterns in the analysed mountain rivers. While significant differences in macroinvertebrate community structures were found among substrates, the influence of stream/river type conditions was particularly evident. Apart from ranking environmental variables worth including in a long-term aquatic biodiversity monitoring program in mountain areas, our study provides a baseline for practical applications. For instance, depending on the desired outcome of habitat heterogeneity restoration, it can suggest the optimal scale (landscape vs. reach vs. patch) for prioritizing in-field interventions.</p></div>","PeriodicalId":51110,"journal":{"name":"Limnologica","volume":"106 ","pages":"Article 126172"},"PeriodicalIF":1.7,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S0075951124000252/pdfft?md5=356451a68d91ed939df9f0509f2ce260&pid=1-s2.0-S0075951124000252-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141028681","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}