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Robust thalamic nuclei segmentation from T1-weighted MRI using polynomial intensity transformation 利用多项式强度变换从 T1 加权磁共振成像中稳健地分割丘脑核团
Pub Date : 2024-03-28 DOI: 10.1007/s00429-024-02777-5
Julie P. Vidal, Lola Danet, Patrice Péran, Jérémie Pariente, Meritxell Bach Cuadra, Natalie M. Zahr, Emmanuel J. Barbeau, Manojkumar Saranathan

Abstract

Accurate segmentation of thalamic nuclei, crucial for understanding their role in healthy cognition and in pathologies, is challenging to achieve on standard T1-weighted (T1w) magnetic resonance imaging (MRI) due to poor image contrast. White-matter-nulled (WMn) MRI sequences improve intrathalamic contrast but are not part of clinical protocols or extant databases. In this study, we introduce histogram-based polynomial synthesis (HIPS), a fast preprocessing transform step that synthesizes WMn-like image contrast from standard T1w MRI using a polynomial approximation for intensity transformation. HIPS was incorporated into THalamus Optimized Multi-Atlas Segmentation (THOMAS) pipeline, a method developed and optimized for WMn MRI. HIPS-THOMAS was compared to a convolutional neural network (CNN)-based segmentation method and THOMAS modified for the use of T1w images (T1w-THOMAS). The robustness and accuracy of the three methods were tested across different image contrasts (MPRAGE, SPGR, and MP2RAGE), scanner manufacturers (PHILIPS, GE, and Siemens), and field strengths (3 T and 7 T). HIPS-transformed images improved intra-thalamic contrast and thalamic boundaries, and HIPS-THOMAS yielded significantly higher mean Dice coefficients and reduced volume errors compared to both the CNN method and T1w-THOMAS. Finally, all three methods were compared using the frequently travelling human phantom MRI dataset for inter- and intra-scanner variability, with HIPS displaying the least inter-scanner variability and performing comparably with T1w-THOMAS for intra-scanner variability. In conclusion, our findings highlight the efficacy and robustness of HIPS in enhancing thalamic nuclei segmentation from standard T1w MRI.

摘要 丘脑核的精确分割对于了解其在健康认知和病理中的作用至关重要,但由于图像对比度差,在标准 T1 加权(T1w)磁共振成像(MRI)上实现丘脑核的精确分割具有挑战性。白质剔除(WMn)磁共振成像序列可改善鞘内对比度,但并不属于临床方案或现有数据库的一部分。在这项研究中,我们引入了基于直方图的多项式合成(HIPS),这是一个快速预处理转换步骤,它利用强度转换的多项式近似值从标准 T1w MRI 合成类似 WMn 的图像对比度。HIPS 被纳入 "丘脑优化多图集分割"(THOMAS)管道,这是一种针对 WMn MRI 开发和优化的方法。HIPS-THOMAS与基于卷积神经网络(CNN)的分割方法以及为使用T1w图像而修改的THOMAS(T1w-THOMAS)进行了比较。在不同的图像对比度(MPRAGE、SPGR 和 MP2RAGE)、扫描仪制造商(PHILIPS、GE 和 Siemens)和场强(3 T 和 7 T)下测试了三种方法的稳健性和准确性。与 CNN 方法和 T1w-THOMAS 相比,HIPS 转换图像改善了丘脑内对比度和丘脑边界,HIPS-THOMAS 得到的平均 Dice 系数明显更高,体积误差也更小。最后,我们使用频繁移动的人体模型 MRI 数据集对所有三种方法的扫描仪间和扫描仪内变异性进行了比较,HIPS 的扫描仪间变异性最小,扫描仪内变异性与 T1w-THOMAS 不相上下。总之,我们的研究结果凸显了 HIPS 在增强标准 T1w MRI 丘脑核分割方面的有效性和稳健性。
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引用次数: 0
Assigning a social status from face adornments: an fMRI study 从脸部装饰品判断社会地位:fMRI 研究
Pub Date : 2024-03-28 DOI: 10.1007/s00429-024-02786-4
M Salagnon, F d’Errico, S Rigaud, E Mellet

Abstract

For at least 150,000 years, the human body has been culturally modified by the wearing of personal ornaments and probably by painting with red pigment. The present study used functional magnetic resonance imaging to explore the brain networks involved in attributing social status from face decorations. Results showed the fusiform gyrus, orbitofrontal cortex, and salience network were involved in social encoding, categorization, and evaluation. The hippocampus and parahippocampus were activated due to the memory and associative skills required for the task, while the inferior frontal gyrus likely interpreted face ornaments as symbols. Resting-state functional connectivity analysis clarified the interaction between these regions. The study highlights the importance of these neural interactions in the symbolic interpretation of social markers on the human face, which were likely active in early Homo species and intensified with Homo sapiens populations as more complex technologies were developed to culturalize the human face.

摘要 至少在 15 万年前,人类就已经通过佩戴个人装饰品以及可能通过涂抹红色颜料对身体进行文化修饰。本研究利用功能磁共振成像技术探讨了从面部装饰归因社会地位所涉及的大脑网络。结果显示,纺锤形回、眶额皮层和显著性网络参与了社会编码、分类和评价。海马和副海马因任务所需的记忆和联想能力而被激活,而额下回则可能将脸部装饰品解释为符号。静息态功能连接分析阐明了这些区域之间的相互作用。这项研究强调了这些神经交互作用在人类面部社会标记的符号解释中的重要性,它们很可能在早期智人物种中就很活跃,并随着智人种群发展出更复杂的技术使人类面部文化化而得到加强。
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引用次数: 0
Comparative MRI analysis of the forebrain of three sauropsida models 三种长尾猴模型前脑的核磁共振成像对比分析
Pub Date : 2024-03-28 DOI: 10.1007/s00429-024-02788-2
S Jiménez, I Santos-Álvarez, E Fernández-Valle, D Castejón, P Villa-Valverde, C Rojo-Salvador, P Pérez-Llorens, M. J. Ruiz-Fernández, S. Ariza-Pastrana, R. Martín-Orti, Juncal González-Soriano, Nerea Moreno

The study of the brain by magnetic resonance imaging (MRI) allows to obtain detailed anatomical images, useful to describe specific encephalic structures and to analyze possible variabilities. It is widely used in clinical practice and is becoming increasingly used in veterinary medicine, even in exotic animals; however, despite its potential, its use in comparative neuroanatomy studies is still incipient. It is a technology that in recent years has significantly improved anatomical resolution, together with the fact that it is non-invasive and allows for systematic comparative analysis. All this makes it particularly interesting and useful in evolutionary neuroscience studies, since it allows for the analysis and comparison of brains of rare or otherwise inaccessible species. In the present study, we have analyzed the prosencephalon of three representative sauropsid species, the turtle Trachemys scripta (order Testudine), the lizard Pogona vitticeps (order Squamata) and the snake Python regius (order Squamata) by MRI. In addition, we used MRI sections to analyze the total brain volume and ventricular system of these species, employing volumetric and chemometric analyses together. The raw MRI data of the sauropsida models analyzed in the present study are available for viewing and downloading and have allowed us to produce an atlas of the forebrain of each of the species analyzed, with the main brain regions. In addition, our volumetric data showed that the three groups presented clear differences in terms of total and ventricular brain volumes, particularly the turtles, which in all cases presented distinctive characteristics compared to the lizards and snakes.

通过磁共振成像(MRI)对大脑进行研究可以获得详细的解剖图像,有助于描述特定的脑部结构和分析可能的变异。磁共振成像在临床实践中得到广泛应用,在兽医学中的应用也日益增多,甚至在外来动物中也有应用;然而,尽管磁共振成像具有潜力,但在比较神经解剖学研究中的应用仍处于起步阶段。近年来,这项技术大大提高了解剖分辨率,而且它是非侵入性的,可以进行系统的比较分析。所有这一切都使它在进化神经科学研究中特别有趣和有用,因为它可以分析和比较稀有或其他无法获取的物种的大脑。在本研究中,我们通过核磁共振成像分析了三个具有代表性的蜥形纲物种的前脑,它们分别是龟(Trachemys scripta)(鳞目)、蜥蜴(Pogona vitticeps)(鳞目)和蛇(Python regius)(鳞目)。此外,我们还利用核磁共振成像切片分析了这些物种的总脑容量和脑室系统,并同时采用了容积分析和化学计量分析。本研究中分析的蜥脚类动物模型的原始磁共振成像数据可供浏览和下载,并使我们能够绘制所分析的每个物种的前脑图谱,其中包括主要的脑区。此外,我们的容积数据显示,三个组别在脑总体积和脑室体积方面存在明显差异,尤其是龟类,与蜥蜴和蛇类相比,龟类在所有情况下都呈现出独特的特征。
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引用次数: 0
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Brain Structure and Function
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