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Tumescenamide C, a cyclic lipodepsipeptide from Streptomyces sp. KUSC_F05, exerts antimicrobial activity against the scab-forming actinomycete Streptomyces scabiei 来自链霉菌 KUSC_F05 的环脂二肽 Tumescenamide C 对疥疮形成放线菌 Streptomyces scabiei 具有抗菌活性。
IF 3.3 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-03-25 DOI: 10.1038/s41429-024-00716-4
Kensuke Kaneko, Marika Mieda, Yulu Jiang, Nobuaki Takahashi, Hideaki Kakeya
The antimicrobial activity of tumescenamide C against the scab-forming S. scabiei NBRC13768 was confirmed with a potent IC50 value (1.5 μg/mL). Three tumescenamide C-resistant S. scabiei strains were generated to compare their gene variants. All three resistant strains contained nonsynonymous variants in genes related to cellobiose/cellotriose transport system components; cebF1, cebF2, and cebG2, which are responsible for the production of the phytotoxin thaxtomin A. Decrease in thaxtomin A production and the virulence of the three resistant strains were revealed by the LC/MS analysis and necrosis assay, respectively. Although the nonsynonymous variants were insufficient for identifying the molecular target of tumescenamide C, the cell wall component wall teichoic acid (WTA) was observed to bind significantly to tumescenamide C. Moreover, changes in the WTA contents were detected in the tumescenamide C-resistant strains. These results imply that tumescenamide C targets the cell wall system to exert antimicrobial effects on S. scabiei.
图森酰胺 C 对疥疮形成菌 NBRC13768 的抗菌活性得到了证实,其 IC50 值(1.5 μg/mL)非常有效。为了比较疥癣病菌的基因变异,生成了三株对 Tumescenamide C 具有抗性的疥癣病菌。这三种抗性菌株都含有与纤维生物糖/细胞三糖转运系统成分有关的非同义变体基因:cebF1、cebF2和cebG2,它们负责产生植物毒素thaxomin A。虽然非同义变体不足以确定噻菌胺 C 的分子靶标,但观察到细胞壁成分壁茶酸 (WTA) 与噻菌胺 C 有显著结合。这些结果表明,妥布酰胺 C 以细胞壁系统为目标,对疥螨产生抗菌作用。
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引用次数: 0
Okichromanone, a new antiviral chromanone from a marine-derived Microbispora Okichromanone,一种来自海洋的小孢子菌的新型抗病毒色满酮。
IF 3.3 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-03-22 DOI: 10.1038/s41429-024-00718-2
Marwa Elsbaey, Takahiro Jomori, Junichi Tanaka, Naoya Oku, Yasuhiro Igarashi
Okichromanone (1), a new chromanone, was isolated from the culture extract of a sponge-derived actinomycete Microbispora, along with known 1-hydroxyphenazine (2). Compound 1 was elucidated to exist as a mixture of two isomeric structures (1a and 1b) at a ratio of nearly 3:2. Compounds 1 and 2 showed anti HSV-I activity with IC50 values 40 and 86 μM, respectively, and anti HSV-II activity with IC50 values 59 and 123 μM, respectively.
从海绵放线菌 Microbispora 的培养提取物中分离出了 Okichromanone(1)和已知的 1-hydroxyphenazine(2),这是一种新的色满酮。化合物 1 被证实是两种异构体结构(1a 和 1b)的混合物,比例接近 3:2。化合物 1 和 2 具有抗 HSV-I 的活性,IC50 值分别为 40 和 86 μM;具有抗 HSV-II 的活性,IC50 值分别为 59 和 123 μM。
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引用次数: 0
Three new phthalide derivatives from culture broth of Dentipellis fragilis and their cytotoxic activities 从脆弱双孢蘑菇培养液中提取的三种新的邻苯二甲酸酯衍生物及其细胞毒性活性。
IF 3.3 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-03-22 DOI: 10.1038/s41429-024-00720-8
Dae-Won Ki, Dae-Cheol Choi, Yeong-Seon Won, Seung-Jae Lee, Young-Hee Kim, In-Kyoung Lee, Bong-Sik Yun
Three new phthalide derivatives (1‒3) together with two known compounds, erinaceolactone B (4) and hericerin III (5), were isolated from the culture broth of Dentipellis fragilis. The chemical structures of 1‒5 were determined by analyses of their 1D-, 2D-NMR, and MS. The absolute configuration of 1 was determined by CD analysis. The isolated compounds were assessed for their cytotoxic activities against A549, DU145, HCT116, and HT1080 cancer cell lines. Compounds 1‒5 showed strong cytotoxic activities against DU145, with IC50 values ranging from 14.3 to 16.1 µM. Additionally, all compounds showed moderate or weak cytotoxic activities against all cell lines except for compounds 4 and 1 which showed no cytotoxic activities against A549 and HCT116 cancer cell lines, respectively. Against HT1080 cancer cell line, only compound 2 displayed moderate cytotoxic activity.
从脆弱双胞藻的培养液中分离出了三种新的邻苯二甲酸酯衍生物(1-3)以及两种已知化合物麦角内酯 B(4)和麦角素 III(5)。通过一维、二维核磁共振和质谱分析确定了 1-5 的化学结构。通过 CD 分析确定了 1 的绝对构型。评估了分离出的化合物对 A549、DU145、HCT116 和 HT1080 癌细胞株的细胞毒活性。化合物 1-5 对 DU145 具有很强的细胞毒活性,IC50 值为 14.3 至 16.1 µM。此外,除了化合物 4 和 1 分别对 A549 和 HCT116 癌细胞株没有细胞毒性活性外,其他化合物对所有细胞株都显示出中等或较弱的细胞毒性活性。对于 HT1080 癌细胞株,只有化合物 2 显示出中等程度的细胞毒性活性。
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引用次数: 0
Uncovering the potentiality of quinazoline derivatives against Pseudomonas aeruginosa with antimicrobial synergy and SAR analysis 通过抗菌协同作用和 SAR 分析揭示喹唑啉衍生物抗铜绿假单胞菌的潜力。
IF 3.3 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-03-21 DOI: 10.1038/s41429-024-00717-3
Rakshit Manhas, Arti Rathore, Ujwal Havelikar, Shavi Mahajan, Sumit G. Gandhi, Avisek Mahapa
Antimicrobial resistance has emerged as a covert global health crisis, posing a significant threat to humanity. If left unaddressed, it is poised to become the foremost cause of mortality worldwide. Among the multitude of resistant bacterial pathogens, Pseudomonas aeruginosa, a Gram-negative, facultative bacterium, has been responsible for mild to deadly infections. It is now enlisted as a global critical priority pathogen by WHO. Urgent measures are required to combat this formidable pathogen, necessitating the development of novel anti-pseudomonal drugs. To confront this pressing issue, we conducted an extensive screening of 3561 compounds from the ChemDiv library, resulting in the discovery of potent anti-pseudomonal quinazoline derivatives. Among the identified compounds, IDD-8E has emerged as a lead molecule, exhibiting exceptional efficacy against P. aeruginosa while displaying no cytotoxicity. Moreover, IDD-8E demonstrated significant pseudomonal killing, disruption of pseudomonal biofilm and other anti-bacterial properties comparable to a well-known antibiotic rifampicin. Additionally, IDD-8E’s synergy with different antibiotics further strengthens its potential as a powerful anti-pseudomonal agent. IDD-8E also exhibited significant antimicrobial efficacy against other ESKAPE pathogens. Moreover, we elucidated the Structure-Activity-Relationship (SAR) of IDD-8E targeting the essential WaaP protein in P. aeruginosa. Altogether, our findings emphasize the promise of IDD-8E as a clinical candidate for novel anti-pseudomonal drugs, offering hope in the battle against antibiotic resistance and its devastating impact on global health.
抗菌药耐药性已成为一个隐蔽的全球健康危机,对人类构成重大威胁。如果不加以解决,它将成为全球死亡的首要原因。在众多具有抗药性的细菌病原体中,铜绿假单胞菌是一种革兰氏阴性、兼性细菌,一直是造成轻微至致命感染的罪魁祸首。世卫组织现已将其列为全球重大优先病原体。要对付这种可怕的病原体,必须采取紧急措施,开发新型抗假单胞菌药物。面对这一紧迫问题,我们对 ChemDiv 库中的 3561 个化合物进行了广泛筛选,最终发现了强效抗假性喹唑啉衍生物。在已发现的化合物中,IDD-8E 是一个先导分子,它对铜绿假单胞菌具有卓越的疗效,同时没有细胞毒性。此外,IDD-8E 还表现出显著的假菌丝杀伤力、破坏假菌丝生物膜以及其他抗菌特性,可与著名抗生素利福平相媲美。此外,IDD-8E 与不同抗生素的协同作用进一步增强了其作为强效抗假菌体药物的潜力。IDD-8E 对其他 ESKAPE 病原体也有显著的抗菌效果。此外,我们还阐明了 IDD-8E 针对铜绿假单胞菌必需的 WaaP 蛋白的结构-活性关系 (SAR)。总之,我们的研究结果强调了 IDD-8E 作为新型抗假丝酵母药物临床候选药物的前景,为抗击抗生素耐药性及其对全球健康的破坏性影响带来了希望。
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引用次数: 0
Structure of prolylrapamycin: confirmation through a revised and detailed NMR assignment study 丙烯拉霉素的结构:通过修订和详细的核磁共振赋值研究加以确认
IF 3.3 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-03-19 DOI: 10.1038/s41429-024-00714-6
Annalisa Mortoni, Eugenio Castelli, Teresa Recca, Paolo Quadrelli
A complete and detailed characterization of Rapamycin (1) and Prolylrapamycin (2) has been conducted by homo- and hetero-nuclear NMR experiments in DMSO-d6 along with HRMS and FT-IR spectra and DSCs analyses. The NMR experiments allowed the assignment of every single proton and carbon atom belonging to the two structures and the definitive confirm of the presence of a pyrrolidine ring in Prolylrapamycin (2) in place of the piperidine ring that characterizes the structure of Sirolimus.
通过在 DMSO-d6 中进行同源和异源核 NMR 实验、HRMS 和 FT-IR 光谱以及 DSC 分析,对雷帕霉素 (1) 和 Prolylrapamycin (2) 进行了全面而详细的表征。核磁共振实验确定了属于这两种结构的每一个质子和碳原子,并最终确认 Prolylrapamycin (2) 中存在一个吡咯烷环,而不是西罗莫司结构中的哌啶环。
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引用次数: 0
Correlation between the spread of IMP-producing bacteria and the promoter strength of blaIMP genes 产 IMP 细菌的传播与 blaIMP 基因启动子强度之间的相关性。
IF 3.3 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-03-15 DOI: 10.1038/s41429-024-00715-5
Yuta Kikuchi, Mariko Yoshida, Asaomi Kuwae, Yukihiro Asami, Yuki Inahashi, Akio Abe
The first report of transmissible carbapenem resistance encoded by blaIMP-1 was discovered in Pseudomonas aeruginosa GN17203 in 1988, and blaIMP-1 has since been detected in other bacteria, including Enterobacterales. Currently, many variants of blaIMPs exist, and point mutations in the blaIMP promoter have been shown to alter promoter strength. For example, the promoter (Pc) of blaIMP-1, first reported in P. aeruginosa GN17203, was a weak promoter (PcW) with low-level expression intensity. This study investigates whether point mutations in the promoter region have helped to create strong promoters under antimicrobial selection pressure. Using bioinformatic approaches, we retrieved 115 blaIMPs from 14,529 genome data of Pseudomonadota and performed multiple alignment analyses. The results of promoter analysis of the 115 retrieved blaIMPs showed that most of them used the Pc located in class 1 integrons (n = 112, 97.4%). The promoter analysis by year revealed that the blaIMP population with the strong promoter, PcS, was transient. In contrast, the PcW-TG population, which had acquired a TGn-extended −10 motif in PcW and had an intermediate promoter strength, gradually spread throughout the world. An inverse correlation between Pc promoter strength and Intl1 integrase excision efficiency has been reported previously [1]. Because of this trade-off, it is unlikely that blaIMPs with strong promoters will increase rapidly, but the possibility that promoter strength will increase with the use of other integrons cannot be ruled out. Monitoring of the blaIMP genes, including promoter analysis, is necessary for global surveillance of carbapenem-resistant bacteria.
1988 年,在铜绿假单胞菌 GN17203 中首次发现了由 blaIMP-1 编码的可传播碳青霉烯耐药性,此后在包括肠杆菌属在内的其他细菌中也检测到了 blaIMP-1。目前,存在许多 blaIMP 的变体,已证明 blaIMP 启动子中的点突变可改变启动子的强度。例如,首次在铜绿假单胞菌 GN17203 中报道的 blaIMP-1 启动子(Pc)是一个低水平表达强度的弱启动子(PcW)。本研究探讨了启动子区域的点突变是否有助于在抗菌选择压力下产生强启动子。利用生物信息学方法,我们从 14529 个假单胞菌基因组数据中检索到 115 个 blaIMPs,并进行了多重比对分析。对检索到的115个blaIMPs的启动子分析结果表明,它们大多使用了位于1类整合子中的Pc(n = 112,97.4%)。按年份进行的启动子分析表明,具有强启动子 PcS 的 blaIMP 群体是瞬时的。与此相反,PcW-TG 群体在 PcW 中获得了 TGn 扩展的 -10 基序,启动子强度处于中等水平,并逐渐扩散到世界各地。之前有报道称,Pc 启动子强度与 Intl1 整合酶切除效率之间存在反相关关系 [1]。由于这种权衡关系,具有强启动子的 blaIMP 不太可能迅速增加,但不能排除启动子强度会随着其他整合子的使用而增加的可能性。对 blaIMP 基因进行监测(包括启动子分析)对于在全球范围内监控耐碳青霉烯类细菌是非常必要的。
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引用次数: 0
Pharmacokinetics, tissue distribution, bioavailability and excretion of the anti-virulence drug Fluorothiazinon in rats and rabbits 抗病毒药物氟噻嗪酮在大鼠和兔子体内的药代动力学、组织分布、生物利用度和排泄。
IF 3.3 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-03-15 DOI: 10.1038/s41429-024-00719-1
Mark V. Savitskii, Natalia E. Moskaleva, Alex Brito, Pavel A. Markin, Nailya A. Zigangirova, Anna V. Soloveva, Anna B. Sheremet, Natalia E. Bondareva, Nadezhda L. Lubenec, Franco Tagliaro, Vadim V. Tarasov, Kristina A. Tatzhikova, Svetlana A. Appolonova
Growing antimicrobial resistance has accelerated the development of anti-virulence drugs to suppress bacterial toxicity without affecting cell viability. Fluorothiazinon (FT), an anti-virulence, type three secretion system and flagella motility inhibitor which has shown promise to suppress drug-resistant pathogens having the potential to enhance the efficacy of commonly prescribed antibiotics when used in combination. In this study we characterized the pharmacokinetics, tissue distribution, bioavailability and excretion of FT in rats and rabbits. FT presented a dose-proportional linear increase in the blood of rats. Tissue distribution profiling confirmed that FT distributes to all organs being substantially higher than in the blood of rats. The bioavailability of FT was higher when administered with starch than with water implying FT should be ideally dosed with food. FT was primarily excreted in the feces in rats and rabbits while negligible amounts are recovered from the urine.
抗菌药耐药性的不断增加加速了抗病毒药物的开发,以在不影响细胞活力的情况下抑制细菌毒性。氟噻嗪侬(FT)是一种抗病毒药、三型分泌系统和鞭毛运动抑制剂,有望抑制耐药性病原体,在联合使用时有可能提高常用抗生素的疗效。在这项研究中,我们研究了 FT 在大鼠和兔子体内的药代动力学、组织分布、生物利用度和排泄情况。FT 在大鼠血液中呈剂量比例线性增加。组织分布剖析证实,FT 在所有器官中的分布均远高于在大鼠血液中的分布。与淀粉一起给药时,FT 的生物利用率高于与水一起给药时,这意味着 FT 最好与食物一起给药。大鼠和家兔的 FT 主要通过粪便排泄,而从尿液中回收的量微乎其微。
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引用次数: 0
Efflux pump inhibitor, phenylalanine-arginine beta-naphthylamide analog potentiates the activity of 5-O-mycaminosyltylonolide for multi-drug resistant Pseudomonas aeruginosa 外排泵抑制剂苯丙氨酸-精氨酸-β-萘甲酰胺类似物增强了 5-O-mycaminosyltylonolide 对多重耐药铜绿假单胞菌的活性。
IF 3.3 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-03-11 DOI: 10.1038/s41429-024-00713-7
Aoi Kimishima, Masako Honsho, Junsei Terai, Paul Wasuwanich, Sota Honma, Hidehito Matsui, Hideaki Hanaki, Yukihiro Asami
The emergence and spread of antimicrobial resistance are global threats. Pseudomonas aeruginosa (P. aeruginosa) is responsible for a substantial proportion of this global health issue because of its intrinsic resistance to many antibiotics due to the impermeability of its outer membrane and its multidrug efflux pump systems. Therefore, therapeutic drugs are limited, and the development of new drugs is extremely challenging. As an alternative approach, we focused on a combinational treatment strategy and found that 5-O-mycaminosyltylonolide (OMT) showed potent antibacterial activity against P. aeruginosa in the presence of an efflux pump inhibitor, phenylalanine-arginine beta-naphthylamide (PAβN). In this report, we prepared a PAβN derivative and compared the potentiation activity of OMT by PAβNs against multidrug-resistant P. aeruginosa clinical isolates.
抗生素耐药性的出现和传播是全球性威胁。铜绿假单胞菌(P. aeruginosa)是造成这一全球健康问题的主要原因,因为它的外膜和多药外排泵系统具有抗渗透性,因而对许多抗生素具有固有的耐药性。因此,治疗药物有限,新药开发极具挑战性。作为一种替代方法,我们将重点放在了联合治疗策略上,并发现 5-O-mycaminosyltylonolide(OMT)在外排泵抑制剂苯丙氨酸-精氨酸-β-萘甲酰胺(PAβN)的作用下对铜绿假单胞菌显示出了强大的抗菌活性。在本报告中,我们制备了一种 PAβN 衍生物,并比较了 PAβNs 对多重耐药铜绿假单胞菌临床分离株的 OMT 增效活性。
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引用次数: 0
New antimalarial iromycin analogs produced by Streptomyces sp. RBL-0292 链霉菌 RBL-0292 产生的新型抗疟霉素类似物。
IF 3.3 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-03-04 DOI: 10.1038/s41429-024-00707-5
So-ichiro Kimura, Yoshihiro Watanabe, Shiori Shibasaki, Naoya Shinzato, Yuki Inahashi, Toshiaki Sunazuka, Rei Hokari, Aki Ishiyama, Masato Iwatsuki
Two new antimalarial compounds, named prenylpyridones A (1) and B (2), were discovered from the actinomycete cultured material of Streptomyces sp. RBL-0292 isolated from the soil on Hamahiga Island in Okinawa prefecture. The structures of 1 and 2 were elucidated as new iromycin analogs having α-pyridone ring by MS and NMR analyses. Compounds 1 and 2 showed moderate in vitro antimalarial activity against chloroquine-sensitive and chloroquine-resistant Plasmodium falciparum strains, with IC50 values ranging from 80.7 to 106.7 µM.
从冲绳县浜萩岛土壤中分离出的链霉菌 RBL-0292 的放线菌培养物中发现了两种新的抗疟疾化合物,分别命名为前吡啶酮 A (1) 和 B (2)。通过质谱和核磁共振分析,阐明了 1 和 2 的结构,它们是具有 α-吡啶酮环的新伊洛霉素类似物。化合物 1 和 2 对氯喹敏感和耐氯喹的恶性疟原虫菌株显示出适度的体外抗疟活性,其 IC50 值介于 80.7 至 106.7 µM 之间。
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引用次数: 0
Biofilm formation and antimicrobial resistance pattern of uropathogenic E. coli ST131 isolated from children with malignant tumors 从患有恶性肿瘤的儿童中分离出的尿路致病性大肠杆菌 ST131 的生物膜形成和抗菌药耐药性模式。
IF 3.3 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-03-04 DOI: 10.1038/s41429-024-00704-8
Noha Anwar Hassuna, Eman M. Rabea, W. K. M. Mahdi, Wedad M. Abdelraheem
The multidrug-resistant clone identified as Escherichia coli sequence type 131 (E. coli ST131) has spread world-wide. This study sought to ascertain the frequency and biofilm formation of E. coli ST131 isolated from children with various malignancies. A total of 60 uropathogenic E. coli (UPEC) isolates from children without cancer and 30 UPEC isolates from children with cancer were assessed in this study. The microdilution method was used to investigate the sensitivity of bacteria to antibiotics. The microtiter plate (MTP) approach was used to phenotypically assess biofilm formation. The lasR, pelA, and lecA biofilm-encoding genes were detected by PCR in biofilm-producing isolates of E. coli. Thirty-seven out of 90 E. coli isolates were found to be ST131 (41.1%), with 17 (56.7%) from cancer-affected children and 20 (33.3%) from children without cancer, respectively (P-value = 0.036). The frequency of antimicrobial resistance was higher in ST131 strains were compared to non-ST131 strains and when they were isolated from healthy children vs. those who had cancer. In contrast to non-ST131 isolates, ST131 isolates were more biofilm-producers. There was a significant difference between the percentage of biofilm producers between the 22 (100%) ST131-O16 isolates and the 13 (86.7%) ST131-O25b isolates (P-value = 0.04). Children with cancer are more likely than children without cancer to develop biofilm forming E. coli ST131, the latter having a higher profile of antibiotic resistance. Interestingly, E. coli ST131 isolates from non-cancer patients had higher levels of overall antibiotic resistance and while more E. coli ST131isolates from cancer patients formed biofilms.
被确认为大肠埃希氏菌序列131型(大肠埃希氏菌ST131)的耐多种药物克隆已遍布全球。本研究旨在确定从患有各种恶性肿瘤的儿童中分离出的 ST131 型大肠杆菌的频率和生物膜形成情况。本研究评估了从非癌症儿童中分离出的 60 株尿路致病性大肠杆菌(UPEC)和从癌症儿童中分离出的 30 株尿路致病性大肠杆菌。微量稀释法用于研究细菌对抗生素的敏感性。微量滴定板(MTP)法用于表型评估生物膜的形成。通过 PCR 检测了产生生物膜的大肠杆菌分离物中的 lasR、pelA 和 lecA 生物膜编码基因。90 株大肠杆菌分离物中有 37 株(41.1%)为 ST131 型,其中 17 株(56.7%)来自癌症患儿,20 株(33.3%)来自非癌症患儿(P 值 = 0.036)。与非 ST131 菌株相比,ST131 菌株的抗菌频率更高,而且从健康儿童与癌症儿童中分离出来的菌株的抗菌频率也更高。与非 ST131 菌株相比,ST131 菌株更容易产生生物膜。22 株(100%)ST131-O16 分离物和 13 株(86.7%)ST131-O25b 分离物的生物膜产生率存在明显差异(P 值 = 0.04)。与未患癌症的儿童相比,患癌症的儿童更有可能感染形成生物膜的大肠杆菌 ST131,而后者的抗生素耐药性更强。有趣的是,来自非癌症患者的大肠杆菌 ST131 分离物的总体抗生素耐药性水平较高,而来自癌症患者的大肠杆菌 ST131 分离物中形成生物膜的较多。
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引用次数: 0
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Journal of Antibiotics
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