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Isolation and structure determination of streptospherins B–F, novel cancer stem cell inhibitors, produced by Streptomyces sp. KUSC-240 Streptomyces sp. KUSC-240新型肿瘤干细胞抑制剂streptospherin B-F的分离与结构分析
IF 2.7 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-06-19 DOI: 10.1038/s41429-025-00843-6
Morihiro Shibasaki, Hiroaki Ikeda, Ami Mimura, Junko Hashimoto, Taiki Suo, Takefumi Kuranaga, Kazuo Shin-ya, Masaya Imoto, Hideaki Kakeya
Streptospherin A (1), which has pentasubstituted benzene and tetrahydropyran moieties, was recently isolated in our laboratory from Streptomyces sp. KUSC-240 as a novel inhibitor of cancer stem cell (CSC) sphere formation. Given the potential of CSCs as target for cancer therapy because of their high malignancy, identification of CSC inhibitors is urgently needed. The chemical structure and biological activity of 1 prompted us to isolate other derivatives from Streptomyces sp. KUSC-240, leading here to the identification of new streptospherins B–F (2–6). Their planar structures were determined by HR-ESI-MS and NMR analyses. The absolute configuration of 4 was proposed by using a modified Mosher’s method, acetonide formation, and the J-based configuration analysis (JBCA) method. The absolute configurations of 3 and 5 were also determined by using ECD spectra and comparison with that of 4. Analysis of the whole genome sequence of the producing strain suggested a plausible biosynthesis pathway for 3–5. Compounds 2–6 inhibited CSC sphere formation and suppressed CSC growth, indicating that streptospherins are promising seed compounds for CSC inhibitors for cancer chemotherapy.
Streptospherin A(1)是我们实验室最近从Streptomyces sp. KUSC-240中分离到的一种新型癌症干细胞(CSC)球形成抑制剂,具有五取代苯和四氢吡喃基团。鉴于CSC的高恶性性,其作为癌症治疗靶点的潜力,迫切需要鉴定CSC抑制剂。1的化学结构和生物活性促使我们从Streptomyces sp. KUSC-240中分离出其他衍生物,从而鉴定出新的streptospherins B-F(2-6)。通过质谱和核磁共振分析确定了它们的平面结构。采用改进的Mosher法、乙酰胺生成法和j基构型分析法(JBCA)确定了4的绝对构型。利用ECD谱并与4进行比较,确定了3和5的绝对构型。产菌全基因组序列分析提示了3-5的合理生物合成途径。化合物2-6抑制CSC球的形成,抑制CSC生长,提示链状球蛋白是有希望作为CSC抑制剂用于癌症化疗的种子化合物。
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引用次数: 0
Study about fluostatins: efficient preparation of fluostatin A and discovery of fluostatin derivatives from Streptomyces sp. TA-3391 氟他汀类药物的研究:链霉菌TA-3391中氟他汀A的高效制备及氟他汀衍生物的发现。
IF 2.7 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-06-18 DOI: 10.1038/s41429-025-00841-8
Shigehiro Tohyama, Seiji Nukui, Masaki Hatano, Chigusa Hayashi, Isao Momose, Masayuki Igarashi
Fluostatins are a class of compounds having four unique ring systems. They were originally isolated as dipeptidyl peptidase III (DPP3) inhibitors, and various derivatives and activities have been reported. In this study, fluostatin A, which is difficult to prepare by fermentative production, was effectively prepared by the transformation of fluostatin B. A new derivative, fluostatin Y, and a new naturally occurring derivative, fluostatin B2, were obtained, and their structures were determined. Furthermore, the bioactivity, DPP3 inhibitory activity, and antibacterial and cytotoxic activities were examined.
氟他汀类药物是一类具有四个独特环系统的化合物。它们最初是作为二肽基肽酶III (DPP3)抑制剂分离出来的,各种衍生物和活性已被报道。本研究通过对氟他汀b的转化,有效地制备了难以发酵制备的氟他汀A。得到了新的衍生物氟他汀Y和新的天然衍生物氟他汀B2,并确定了它们的结构。此外,还检测了其生物活性、DPP3抑制活性、抗菌活性和细胞毒活性。
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引用次数: 0
Correction: Evaluation of lung epithelial lining fluid concentrations of lascufloxacin against Streptococcus pneumoniae in a hollow-fiber infection model 更正:在中空纤维感染模型中评估肺上皮内层液中拉库沙星抗肺炎链球菌的浓度。
IF 2.7 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-06-16 DOI: 10.1038/s41429-025-00837-4
Haruka Nakagawa Kamura, Tetsuo Yamaguchi, Toshihiro Kasama, Yukitaka Hayashi, Masakaze Hamada, Kazuaki Matsumoto, Ryo Miyake, Yoshikazu Ishii
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引用次数: 0
Rare distribution of butenolide-type signaling molecules among Streptomyces strains and functional importance as inducing factors for secondary metabolite production in Streptomyces rochei 7434AN4 丁烯内酯型信号分子在链霉菌中的罕见分布及其作为罗氏链霉菌7434AN4次生代谢物产生诱导因子的功能重要性
IF 2.7 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-06-12 DOI: 10.1038/s41429-025-00840-9
Asahi Hirata, Miho Sumiyoshi, Hazuki Fujita, Momoko Akimoto, Mary Hannah Rose A. Padayao, Yuto Eguchi, Maki Matsuura, Miyuki Otsuka, Kuninobu Inada, Aiko Teshima, Kenji Arakawa
Streptomyces rochei 7434AN4 produces two structurally unrelated polyketide antibiotics, lankacidin (LC) and lankamycin (LM), and their biosynthesis is tightly controlled by 2,3-disubstituted butenolide-type signaling molecules SRB1 and SRB2. We here investigated the distribution of 2,3-disubstituted butenolides (SRB-type butenolides) among randomly selected 122 Streptomyces strains using two approaches; (1) feeding of their culture extracts into an srrX-deficient strain KA20 of S. rochei, and (2) co-fermentation with strain KA20. All the randomly selected donor strains, except for Streptomyces cellostaticus (a LC and LM producer), failed to restore LC and LM production in strain KA20. These findings strongly revealed the rare distribution of SRB-type butenolide molecules in Streptomyces species. One of the SRB-type butenolide, SAB1, an inducing molecule for nikkomycin production in Streptomyces ansochromogenes, was unable to restore antibiotic production in strain KA20 even at 1 mM concentration. Furthermore, we noticed the accumulation of 4-dehydroxy-SRB1 as a novel compound when SRB1 was fed into strain KA20. Purified 4-dehydroxy-SRB1 has no inducing activity of antibiotic production in strain KA20 even at 1000-fold higher concentration (50 µM) against a minimum inducing concentration of natural SRB1 (40 nM). These findings suggested the importance of the length of a hydrocarbon chain attached at C-2 and a hydroxyl group at C-4 for inducing activity in S. rochei.
链霉菌rochei 7434AN4产生两种结构无关的聚酮类抗生素lankacidin (LC)和lankamycin (LM),它们的生物合成受到2,3-二取代丁烯内酯型信号分子SRB1和SRB2的严格控制。本文采用两种方法对随机选取的122株链霉菌中2,3-二取代丁烯内酯(srb型丁烯内酯)的分布进行了研究;(1)将其培养提取物投喂srrx缺失菌株KA20,(2)与菌株KA20共发酵。随机选择的所有供体菌株,除产LC和LM的产胞静链霉菌(Streptomyces cellostaticus)外,均未能恢复菌株KA20的LC和LM产量。这些发现有力地揭示了srb型丁烯内酯分子在链霉菌种中的罕见分布。其中一种srb型丁烯内酯SAB1是抗色链霉菌产生尼克霉素的诱导分子,即使在1mm浓度下也不能恢复菌株KA20的抗生素生产。此外,我们注意到当SRB1进入菌株KA20时,4- de羟基-SRB1作为一种新的化合物积累。纯化的4-dehydroxy-SRB1在菌株KA20中的诱导活性为天然SRB1的最低诱导浓度(40 nM)的1000倍(50µM)。这些结果表明,C-2上的烃链长度和C-4上的羟基对诱导罗氏菌活性的重要性。
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引用次数: 0
Micrococcins from Peribacillus sp. KDM594; efficacy against vancomycin-resistant enterococci and drug metabolism in a silkworm model 从周芽孢杆菌sp. KDM594提取微球菌素家蚕模型抗万古霉素耐药肠球菌疗效及药物代谢。
IF 2.7 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-06-11 DOI: 10.1038/s41429-025-00838-3
Akiho Yagi, Mayu Sato, Katsuki Kikuchi, Akito Taniguchi, Takashi Fukuda, Ryuji Uchida
The screening of antibiotics derived from microbial resources to combat vancomycin-resistant enterococci (VRE) revealed that a culture of marine-derived Peribacillus sp. KDM594 exhibited significant therapeutic efficacy in an infected in vivo-mimic silkworm model. Bioassay-guided purification led to the isolation of micrococcins P1 (1) and P2 (2), which exhibited potent antimicrobial activities against Gram-positive bacteria, including VRE, methicillin-resistant Staphylococcus aureus (MRSA), and Mycobacterium spp., with MIC values ranging from 0.25 to 8.0 µg ml−1 using the microdilution method. In the silkworm models infected with VRE or MRSA, 1 and 2 exerted moderate therapeutic effects, with ED50 values ranging from 3.2 to 51 µg larva−1 g−1. Furthermore, a pharmacokinetic analysis revealed that 2 was metabolized to 1 in the silkworm hemolymph, and their elimination half-lives were 3.2 and 3.0 h, respectively. These results suggest that micrococcins are promising lead compounds for the development of anti-VRE and MRSA drugs.
从微生物资源中筛选抗万古霉素耐药肠球菌(VRE)的抗生素,结果表明,海洋源性外芽孢杆菌KDM594培养物对感染的模拟家蚕模型具有显著的治疗效果。生物测定指导下的纯化分离出了微球菌素P1(1)和P2(2),它们对革兰氏阳性细菌(包括VRE、耐甲氧西林金黄色葡萄球菌(MRSA)和分枝杆菌)具有有效的抗菌活性,使用微量稀释法的MIC值为0.25至8.0µg ml-1。在VRE或MRSA感染的家蚕模型中,1和2具有中等的治疗效果,ED50值在3.2 ~ 51µg幼虫-1 g-1之间。此外,药代动力学分析表明,2在家蚕血淋巴中代谢为1,其消除半衰期分别为3.2和3.0 h。这些结果表明,微球菌素是开发抗vre和MRSA药物的有希望的先导化合物。
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引用次数: 0
Obituary of Professor Julian E. Davies 朱利安·e·戴维斯教授的讣告。
IF 2.7 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-06-09 DOI: 10.1038/s41429-025-00827-6
Ólafur S. Andrésson, Douglas E. Berg, Patrice Courvalin, Michel De Wilde, Morimasa Yagisawa, Thomas J. White, Vicky Davies, Robin Davies, Jeremy Davies
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引用次数: 0
New antimicrobial butanolides from a deep sea-derived fungus Aspergillus tabacinus LW82 深海衍生真菌烟曲霉LW82的新型抗菌丁烷内酯。
IF 2.7 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-06-09 DOI: 10.1038/s41429-025-00836-5
Yu Tu, Jinxin Zhang, Lei Cai, Ling Liu
Two new butanolides asperbutanolides A (1) and B (2), and a new fatty acid derivative omphalotol C (3), along with 5 known compounds were isolated from the ethyl acetate (EtOAc) crude extract of the deep-sea-derived fungus Aspergillus tabacinus LW82 guided by OSMAC (One Strain Many Compounds) strategy. The structural elucidation and absolute configuration determination of these compounds were achieved by comprehensive spectroscopic analysis, including nuclear magnetic resonance (NMR), high-resolution electrospray ionization mass spectrometry (HRESIMS), and [Rh2(OCOCF3)4]-induced electronic circular dichroism (ECD) experiment. Compound 1 exhibited antibacterial activity against Pseudomonas syringae pv. Lachrymans with MIC value of 64 μg ml−1. Furthermore, compound 6 displayed significant antifungal efficacy against Cryptococcus gattii R265 and 3284G14, with both MIC values of 8 μg ml−1, comparable to the antifungal agent fluconazole.
采用OSMAC (One Strain Many compounds)策略从深海源真菌烟曲霉LW82的乙酸乙酯(EtOAc)粗提物中分离得到两个新的丁烷醇类化合物asperbutanolides A(1)和B(2),以及一个新的脂肪酸衍生物omphalotool C(3)和5个已知化合物。通过核磁共振(NMR)、高分辨率电喷雾质谱(hresms)和[Rh2(OCOCF3)4]诱导电子圆二色性(ECD)实验等综合光谱分析,对化合物进行了结构解析和绝对构型测定。化合物1对丁香假单胞菌具有抑菌活性。MIC值为64 μg ml-1。此外,化合物6对加蒂隐球菌R265和3284G14的抑菌效果显著,MIC值均为8 μg ml-1,与抗真菌剂氟康唑相当。
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引用次数: 0
Survival strategies of imipenem-resistant P. aeruginosa: a comparative analysis of surface-bound biofilms and unbound aggregates 耐亚胺培南铜绿假单胞菌的生存策略:表面结合生物膜和非结合聚集体的比较分析。
IF 2.7 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-06-06 DOI: 10.1038/s41429-025-00834-7
Mahwish Saleem, Mona Siddiqui, Hafiza Noor ul Huda, Shaista Urooj, Bushra Jabeen, Fouzia Zeeshan Khan, Yasir Raza, Nisar Ahmed Shar, Saeed Khan, Ayaz Ahemd, Zulfiqar Ali Mirani
This study investigated imipenem-resistant Pseudomonas aeruginosa (P. aeruginosa) isolates recovered from various ready-to-eat food items. Isolates were identified as P. aeruginosa based on growth on selective P-Pseudomonas media and confirmed by PCR amplification of the oprI and oprL genes. These isolates formed biofilms under laboratory conditions at 35 °C in Tryptic Soy Broth (TSB). The biofilms were induced by a sub-inhibitory dose of imipenem. Two types of biofilm aggregates were observed: surface-bound biofilms and unbound cell aggregates. Surface-bound biofilms appeared after 48 h of incubation and reached maximum biomass after 96 h. Unbound aggregates were observed after 72 h of incubation. The biomass of aggregates was measured using a crystal violet binding assay. Further characterization revealed two types of unbound or floating aggregates: aggregates detached from surface-bound biofilms and spontaneously formed cell clusters. Both aggregate types exhibited similar imipenem resistance profiles. Comparative analysis of surface-bound and unbound biofilm cells revealed that surface-bound cells were more hydrophobic and relatively more resistant to high temperatures. Both types of aggregates survived at 80 °C for 12 h. Atomic force microscopy showed that surface-bound P. aeruginosa cells were stiffer, with an average force constant of 56.36 ± 5.21 pN nm−1, compared to cells from unbound aggregates [44.55 ± 4.87 pN nm−1]. Similarly, surface-bound cells exhibited greater adhesiveness, with an average adhesion force of 553.25 ± 62.18 pN, whereas cells from floating aggregates demonstrated lower adhesion force values, averaging 451.81 ± 58.32 pN.
本研究调查了从各种即食食品中回收的耐亚胺培南铜绿假单胞菌(P. aeruginosa)。菌株在选择性p -假单胞菌培养基上生长,经PCR扩增oprI和oprL基因,鉴定为铜绿假单胞菌。这些分离株在实验室条件下,在35°C的胰蛋白酶肉汤(TSB)中形成生物膜。亚胺培南亚抑制剂量诱导生物膜。观察到两种类型的生物膜聚集体:表面结合的生物膜和未结合的细胞聚集体。表面结合的生物膜在孵育48 h后出现,96 h后达到最大生物量。72h后观察到未结合的聚集体。聚集体生物量用结晶紫结合法测定。进一步的表征揭示了两种类型的未结合或漂浮聚集体:从表面结合的生物膜分离的聚集体和自发形成的细胞团。两种聚集体表现出相似的亚胺培南抗性谱。表面结合和非表面结合的生物膜细胞的比较分析表明,表面结合的细胞更疏水,相对更耐高温。两种聚集体在80℃下均可存活12 h。原子力显微镜显示,表面结合的铜绿假单胞菌细胞比未结合的聚集体细胞更坚硬,平均力常数为56.36±5.21 pN nm-1,平均力常数为44.55±4.87 pN nm-1。同样,表面结合的细胞表现出更强的粘附力,平均粘附力为553.25±62.18 pN,而来自漂浮聚集体的细胞表现出更低的粘附力值,平均为451.81±58.32 pN。
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引用次数: 0
“Global divide in carbapenem resistance and hypervirulence of Klebsiella pneumonia: comparing trends in India and developed nations”- a comprehensive review “克雷伯菌肺炎碳青霉烯耐药性和高毒力的全球差异:比较印度和发达国家的趋势”——一篇综合综述。
IF 2.7 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-06-03 DOI: 10.1038/s41429-025-00833-8
Saloni V. Koli, Snehal V. Mali, Jisha Geevarghese
The global health problem of carbapenem-resistant and hypervirulent Klebsiella pneumoniae (CRKP) is exacerbated by the lack of effective treatments and increasing resistance. This study compares the clinical impact, resistance mechanisms, and prevalence of CR-hvKP in industrialized and emerging nations, analyzing 300 papers from national databases and selecting 70 for further examination. Treatment effectiveness, clinical outcomes, resistance mechanisms, and prevalence were assessed in the study, which concentrated on CRKP and hvKP strains that carried virulence genes (rmpA, aerobactin, yersiniabactin) and carbapenemase genes (blaKPC, blaNDM, blaOXA-12). With 25% of studies identifying blaOXA-48, 30% reporting blaKPC, and 45% tying blaNDM to resistance, analysis showed β-lactamase genes are mostly responsible for carbapenem resistance in Klebsiella pneumoniae strains. Resistance rates for CR-hvKP range from 4.4% to 100% in India, where the condition is disproportionately common. Clinical results are alarming: hospital-admitted patients had death rates ranging from 30% to 60% and morbidity rates as high as 90%. The study emphasizes how plasmid-mediated resistance, immune evasion mechanisms, and enhanced biofilm development contribute to the pathophysiology of CR-hvKP, making therapy more difficult. Urgent action is needed to battle CR-hvKP and lessen its catastrophic clinical impact, as it is more common in India than developed countries.
碳青霉烯耐药和高致病性肺炎克雷伯菌(CRKP)的全球卫生问题因缺乏有效治疗和耐药性增加而加剧。本研究比较了工业化国家和新兴国家CR-hvKP的临床影响、耐药机制和患病率,分析了来自国家数据库的300篇论文,并选择了70篇进行进一步研究。研究评估了治疗效果、临床结果、耐药机制和流行情况,重点研究了携带毒力基因(rmpA、有氧肌动蛋白、耶尔希尼abactin)和碳青霉烯酶基因(blaKPC、blaNDM、blaOXA-12)的CRKP和hvKP菌株。25%的研究鉴定了blaOXA-48, 30%的研究报告了blaKPC, 45%的研究将blaNDM与耐药联系起来,分析表明β-内酰胺酶基因是肺炎克雷伯菌对碳青霉烯类耐药的主要原因。在印度,CR-hvKP的耐药率从4.4%到100%不等,这种疾病在印度非常常见。临床结果令人震惊:住院病人的死亡率从30%到60%不等,发病率高达90%。该研究强调了质粒介导的耐药性、免疫逃避机制和增强的生物膜发育如何促进CR-hvKP的病理生理,使治疗更加困难。需要采取紧急行动与CR-hvKP作斗争并减轻其灾难性临床影响,因为它在印度比发达国家更为常见。
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引用次数: 0
The antirheumatic drug sulfasalazine ameliorates acute renal failure (ARF) induced by polymyxin B 抗风湿药物磺胺氮嗪可改善多粘菌素B诱导的急性肾功能衰竭。
IF 2.7 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-06-02 DOI: 10.1038/s41429-025-00835-6
Kohei Otani, Tomohiro Kagi, Takuya Noguchi, Sara Suzuki, Yusuke Hirata, Atsushi Matsuzawa
Polymyxin B (PMB) is a polypeptide antibiotic active against multidrug-resistant bacteria, including multidrug-resistant Pseudomonas aeruginosa (MDRP). However, PMB frequently initiates serious acute renal failure (ARF). Our recent study demonstrated that PMB-induced ARF is triggered by inflammatory responses mediated by activation of the NOD-like receptors protein 3 (NLRP3) inflammasome. Here, we provide evidence that sulfasalazine (SSZ), a clinically-used disease-modifying antirheumatic drug (DMARD), can ameliorate PMB-induced ARF in a mouse model of ARF. Since SSZ strongly inhibited the NLRP3 inflammasome activation induced by PMB in macrophages, as previously demonstrated, the amelioration of PMB-induced ARF appears to be brought about by the inhibition of the NLRP3 inflammasome activation. Thus, if SSZ could be effectively utilized in clinical practice, it may be possible to overcome ARF caused by polypeptide antibiotics.
多粘菌素B (Polymyxin B, PMB)是一种多肽抗生素,具有抗多药耐药细菌的活性,包括耐多药铜绿假单胞菌(Pseudomonas aeruginosa, MDRP)。然而,PMB经常引发严重的急性肾功能衰竭(ARF)。我们最近的研究表明,pmb诱导的ARF是由nod样受体蛋白3 (NLRP3)炎性小体激活介导的炎症反应触发的。在这里,我们提供证据表明,磺胺吡啶(SSZ),一种临床使用的疾病改善抗风湿药物(DMARD),可以改善pmg诱导的ARF小鼠模型。由于SSZ强烈抑制巨噬细胞中PMB诱导的NLRP3炎性体激活,如前所述,PMB诱导的ARF的改善似乎是通过抑制NLRP3炎性体激活来实现的。因此,如果SSZ能在临床中得到有效利用,就有可能克服多肽抗生素引起的ARF。
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引用次数: 0
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Journal of Antibiotics
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