Pub Date : 2025-05-05DOI: 10.1080/03610918.2025.2496305
Daniel P Beavers, Yutong Li, James D Stamey, Stephanie Powers, Walter T Ambrosius
A Bayesian approach for variable selection is developed for use in models with a misclassified binary predictor variable. We define the main outcome model containing the latent predictor, the measurement model associated with the prevalence of the predictor, and the sensitivity and specificity models of the fallible classifier conditioned on the true value of the predictor. We use binary indicator variables to execute the Gibbs sampler-based variable selection process, and we identify the highest posterior probability model given the data. We demonstrate the performance of the procedure in several simulation studies, and we utilize the selection method to optimize model performance in two datasets.
{"title":"Bayesian variable selection for logistic regression with a differentially misclassified binary covariate.","authors":"Daniel P Beavers, Yutong Li, James D Stamey, Stephanie Powers, Walter T Ambrosius","doi":"10.1080/03610918.2025.2496305","DOIUrl":"https://doi.org/10.1080/03610918.2025.2496305","url":null,"abstract":"<p><p>A Bayesian approach for variable selection is developed for use in models with a misclassified binary predictor variable. We define the main outcome model containing the latent predictor, the measurement model associated with the prevalence of the predictor, and the sensitivity and specificity models of the fallible classifier conditioned on the true value of the predictor. We use binary indicator variables to execute the Gibbs sampler-based variable selection process, and we identify the highest posterior probability model given the data. We demonstrate the performance of the procedure in several simulation studies, and we utilize the selection method to optimize model performance in two datasets.</p>","PeriodicalId":55240,"journal":{"name":"Communications in Statistics-Simulation and Computation","volume":" ","pages":""},"PeriodicalIF":0.8,"publicationDate":"2025-05-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12371521/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144979315","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-04-14DOI: 10.1080/03610918.2025.2488945
Huirong Hu, Qi Zheng, Maiying Kong
In this article, we propose a marginal structural ordinal logistic regression model (MS-OLRM) to assess treatment effects on ordinal outcomes. Many statistical methods have been developed to estimate average treatment effect (ATE) when the outcome is continuous or binary. The methodology for assessing the effect of treatment for an ordinal outcome is less studied. To address this, we propose utilizing a superiority score as a measure of treatment effect, assessing whether the outcome under treatment is stochastically larger than the outcome under control. Our approach involves employing MS-OLRM in conjunction with Inverse Probability of Treatment Weighting (IPTW) to estimate the superiority score under treatment compared to the control. This methodology adjusts for confounding factors between treatment and outcome by utilizing IPTW, ensuring that all covariates are balanced among different treatment groups in the weighted sample. To assess the performance of the proposed method, we conduct extensive simulation studies. Finally, we apply the developed method to assess the treatment effects of medications and behavioral therapies on patients' recovery from alcohol use disorders using the Kentucky Medicaid 2012-2019 database.
{"title":"Statistical methods for assessing treatment effects on ordinal outcomes using observational data.","authors":"Huirong Hu, Qi Zheng, Maiying Kong","doi":"10.1080/03610918.2025.2488945","DOIUrl":"https://doi.org/10.1080/03610918.2025.2488945","url":null,"abstract":"<p><p>In this article, we propose a marginal structural ordinal logistic regression model (MS-OLRM) to assess treatment effects on ordinal outcomes. Many statistical methods have been developed to estimate average treatment effect (ATE) when the outcome is continuous or binary. The methodology for assessing the effect of treatment for an ordinal outcome is less studied. To address this, we propose utilizing a superiority score as a measure of treatment effect, assessing whether the outcome under treatment is stochastically larger than the outcome under control. Our approach involves employing MS-OLRM in conjunction with Inverse Probability of Treatment Weighting (IPTW) to estimate the superiority score under treatment compared to the control. This methodology adjusts for confounding factors between treatment and outcome by utilizing IPTW, ensuring that all covariates are balanced among different treatment groups in the weighted sample. To assess the performance of the proposed method, we conduct extensive simulation studies. Finally, we apply the developed method to assess the treatment effects of medications and behavioral therapies on patients' recovery from alcohol use disorders using the Kentucky Medicaid 2012-2019 database.</p>","PeriodicalId":55240,"journal":{"name":"Communications in Statistics-Simulation and Computation","volume":" ","pages":""},"PeriodicalIF":0.8,"publicationDate":"2025-04-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12338247/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144979288","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-04-10DOI: 10.1080/03610918.2025.2490204
Thomas G Brooks
Efficient schemes for sampling from the eigenvalues of the Wishart distribution have recently been described for both the standard Wishart case (where the covariance matrix is the identity) and the spiked Wishart with a single spike (where the covariance matrix differs from the identity in a single entry on the diagonal). Here, we generalize these schemes to the spiked Wishart with an arbitrary number of spikes. This approach also applies to the spiked pseudo-Wishart distribution. We describe how to differentiate this procedure for the purposes of stochastic gradient descent, allowing the fitting of the eigenvalue distribution to some target distribution.
{"title":"Sampling Spiked Wishart Eigenvalues.","authors":"Thomas G Brooks","doi":"10.1080/03610918.2025.2490204","DOIUrl":"10.1080/03610918.2025.2490204","url":null,"abstract":"<p><p>Efficient schemes for sampling from the eigenvalues of the Wishart distribution have recently been described for both the standard Wishart case (where the covariance matrix is the identity) and the spiked Wishart with a single spike (where the covariance matrix differs from the identity in a single entry on the diagonal). Here, we generalize these schemes to the spiked Wishart with an arbitrary number of spikes. This approach also applies to the spiked pseudo-Wishart distribution. We describe how to differentiate this procedure for the purposes of stochastic gradient descent, allowing the fitting of the eigenvalue distribution to some target distribution.</p>","PeriodicalId":55240,"journal":{"name":"Communications in Statistics-Simulation and Computation","volume":" ","pages":""},"PeriodicalIF":0.8,"publicationDate":"2025-04-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12629619/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145566293","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-01-28DOI: 10.1080/03610918.2025.2456575
James J Yang, Anne Buu
In spite of wide applications of the singular spectrum analysis (SSA) method, understanding how SSA reconstructs time series and eliminates noise remains challenging due to its complex process. This study provided a novel geometric perspective to elucidate the underlying mechanism of SSA. To address the key issue of conventional SSA that requires a fixed window length and a given threshold for determining the number of groups, we proposed a sequential reconstruction approach that averages reconstructed series from various window lengths with a stopping rule based on a symmetric test. Three main advantages of the proposed method were demonstrated by the simulations and real data analysis of 7-day heart rate data from an e-cigarette user: 1) requiring no prior knowledge of the window length or group number; 2) yielding smaller values of root mean square error (RMSE) than the conventional SSA; and 3) revealing both local features and sudden changes related to events of interest. While conventional SSA excels in extracting stable signal structures, the proposed method is tailored for time series with varying structures such as heart rate data from smartwatches, and thus will have even wider applications.
{"title":"Automated Parameter Selection in Singular Spectrum Analysis for Time Series Analysis.","authors":"James J Yang, Anne Buu","doi":"10.1080/03610918.2025.2456575","DOIUrl":"https://doi.org/10.1080/03610918.2025.2456575","url":null,"abstract":"<p><p>In spite of wide applications of the singular spectrum analysis (SSA) method, understanding how SSA reconstructs time series and eliminates noise remains challenging due to its complex process. This study provided a novel geometric perspective to elucidate the underlying mechanism of SSA. To address the key issue of conventional SSA that requires a fixed window length and a given threshold for determining the number of groups, we proposed a sequential reconstruction approach that averages reconstructed series from various window lengths with a stopping rule based on a symmetric test. Three main advantages of the proposed method were demonstrated by the simulations and real data analysis of 7-day heart rate data from an e-cigarette user: 1) requiring no prior knowledge of the window length or group number; 2) yielding smaller values of root mean square error (RMSE) than the conventional SSA; and 3) revealing both local features and sudden changes related to events of interest. While conventional SSA excels in extracting stable signal structures, the proposed method is tailored for time series with varying structures such as heart rate data from smartwatches, and thus will have even wider applications.</p>","PeriodicalId":55240,"journal":{"name":"Communications in Statistics-Simulation and Computation","volume":" ","pages":""},"PeriodicalIF":0.8,"publicationDate":"2025-01-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12352492/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144979298","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-01-01Epub Date: 2023-08-16DOI: 10.1080/03610918.2023.2245583
Manoj Khanal, Soyoung Kim, Kwang Woo Ahn
Observational studies with right-censored data often have clustered data due to matched pairs or a study center effect. In such data, there may be an imbalance in patient characteristics between treatment groups, where Kaplan-Meier curves or unadjusted cumulative incidence curves can be misleading and may not represent the average patient on a given treatment arm. Adjusted curves are desirable to appropriately display survival or cumulative incidence curves in this case. We propose methods for estimating the adjusted survival and cumulative incidence probabilities for clustered right-censored data. For the competing risks outcome, we allow both covariate-independent and covariate-dependent censoring. We develop an R package adjSURVCI to implement the proposed methods. It provides the estimates of adjusted survival and cumulative incidence probabilities along with their standard errors. Our simulation results show that the adjusted survival and cumulative incidence estimates of the proposed method are unbiased with approximate 95% coverage rates. We apply the proposed method to stem cell transplant data of leukemia patients.
{"title":"Adjusted curves for clustered survival and competing risks data.","authors":"Manoj Khanal, Soyoung Kim, Kwang Woo Ahn","doi":"10.1080/03610918.2023.2245583","DOIUrl":"10.1080/03610918.2023.2245583","url":null,"abstract":"<p><p>Observational studies with right-censored data often have clustered data due to matched pairs or a study center effect. In such data, there may be an imbalance in patient characteristics between treatment groups, where Kaplan-Meier curves or unadjusted cumulative incidence curves can be misleading and may not represent the average patient on a given treatment arm. Adjusted curves are desirable to appropriately display survival or cumulative incidence curves in this case. We propose methods for estimating the adjusted survival and cumulative incidence probabilities for clustered right-censored data. For the competing risks outcome, we allow both covariate-independent and covariate-dependent censoring. We develop an R package <b>adjSURVCI</b> to implement the proposed methods. It provides the estimates of adjusted survival and cumulative incidence probabilities along with their standard errors. Our simulation results show that the adjusted survival and cumulative incidence estimates of the proposed method are unbiased with approximate 95% coverage rates. We apply the proposed method to stem cell transplant data of leukemia patients.</p>","PeriodicalId":55240,"journal":{"name":"Communications in Statistics-Simulation and Computation","volume":" 3","pages":"120-143"},"PeriodicalIF":0.8,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11708817/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"72382911","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-23DOI: 10.1080/03610918.2024.2443202
Shengping Yang, Jianrong Wu
Randomization is an essential component of a successful controlled clinical trial. Many randomization methods have been developed to balance the distributions of covariates across treatment arms to remove potential confounding effects. While the restricted randomization methods would not work well if the number of covariates is large, the theoretical base of the minimization methods needs more justifications. We propose a Bayesian covariate-adaptive randomization method that not only has meaningful interpretations on its adaptive randomization probability, but also achieves desirable marginal and overall balances for both categorical and continuous covariates, particularly when balancing a large number of covariates is necessary.
{"title":"BayCAR: A Bayesian based Covariate-Adaptive Randomization method for multi-arm trials.","authors":"Shengping Yang, Jianrong Wu","doi":"10.1080/03610918.2024.2443202","DOIUrl":"10.1080/03610918.2024.2443202","url":null,"abstract":"<p><p>Randomization is an essential component of a successful controlled clinical trial. Many randomization methods have been developed to balance the distributions of covariates across treatment arms to remove potential confounding effects. While the restricted randomization methods would not work well if the number of covariates is large, the theoretical base of the minimization methods needs more justifications. We propose a Bayesian covariate-adaptive randomization method that not only has meaningful interpretations on its adaptive randomization probability, but also achieves desirable marginal and overall balances for both categorical and continuous covariates, particularly when balancing a large number of covariates is necessary.</p>","PeriodicalId":55240,"journal":{"name":"Communications in Statistics-Simulation and Computation","volume":" ","pages":""},"PeriodicalIF":0.8,"publicationDate":"2024-12-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12610949/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145514949","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-16DOI: 10.1080/03610918.2024.2399159
Gabriel Calvo, Carmen Armero, Luigi Spezia, Maria Grazia Pennino
Bayes factor, defined as the ratio of the marginal likelihood functions of two competing models, is the natural Bayesian procedure for model selection. Marginal likelihoods are usually computationa...
{"title":"Bayes factors for longitudinal model assessment via power posteriors","authors":"Gabriel Calvo, Carmen Armero, Luigi Spezia, Maria Grazia Pennino","doi":"10.1080/03610918.2024.2399159","DOIUrl":"https://doi.org/10.1080/03610918.2024.2399159","url":null,"abstract":"Bayes factor, defined as the ratio of the marginal likelihood functions of two competing models, is the natural Bayesian procedure for model selection. Marginal likelihoods are usually computationa...","PeriodicalId":55240,"journal":{"name":"Communications in Statistics-Simulation and Computation","volume":"2 1","pages":""},"PeriodicalIF":0.9,"publicationDate":"2024-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142259766","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-16DOI: 10.1080/03610918.2024.2401437
R. Malekpour, T. Baghfalaki, M. Ganjali, A. Pourdarvish
This paper investigates the joint modeling of mixed ordinal and continuous longitudinal responses using a random effects model and applying a conditional approach. For the ordinal responses, a late...
{"title":"Joint modeling of mixed skewed longitudinal responses using convolution of normal and log-normal distributions: a Bayesian approach","authors":"R. Malekpour, T. Baghfalaki, M. Ganjali, A. Pourdarvish","doi":"10.1080/03610918.2024.2401437","DOIUrl":"https://doi.org/10.1080/03610918.2024.2401437","url":null,"abstract":"This paper investigates the joint modeling of mixed ordinal and continuous longitudinal responses using a random effects model and applying a conditional approach. For the ordinal responses, a late...","PeriodicalId":55240,"journal":{"name":"Communications in Statistics-Simulation and Computation","volume":"2 1","pages":""},"PeriodicalIF":0.9,"publicationDate":"2024-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142259724","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-14DOI: 10.1080/03610918.2024.2397032
Christina Hoffman, Jakini Auset Kauba, Julie C. Reidy, Thomas Weighill
We introduce and study two new statistical models of ballot truncation – the process wherein voters neglect to rank every candidate during ranked choice voting (RCV). These models allow the incorpo...
{"title":"Statistical models of ballot truncation in ranked choice elections","authors":"Christina Hoffman, Jakini Auset Kauba, Julie C. Reidy, Thomas Weighill","doi":"10.1080/03610918.2024.2397032","DOIUrl":"https://doi.org/10.1080/03610918.2024.2397032","url":null,"abstract":"We introduce and study two new statistical models of ballot truncation – the process wherein voters neglect to rank every candidate during ranked choice voting (RCV). These models allow the incorpo...","PeriodicalId":55240,"journal":{"name":"Communications in Statistics-Simulation and Computation","volume":"188 1","pages":""},"PeriodicalIF":0.9,"publicationDate":"2024-09-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142259727","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-13DOI: 10.1080/03610918.2024.2401443
Sajid Ali
The traditional time-between-events (TBE) control charts are developed in non-adaptive fashion assuming the Poisson process, where the TBE follows the exponential distribution. However, in many sit...
{"title":"Memory-type time-between-events charts using nonhomogeneous Poisson process","authors":"Sajid Ali","doi":"10.1080/03610918.2024.2401443","DOIUrl":"https://doi.org/10.1080/03610918.2024.2401443","url":null,"abstract":"The traditional time-between-events (TBE) control charts are developed in non-adaptive fashion assuming the Poisson process, where the TBE follows the exponential distribution. However, in many sit...","PeriodicalId":55240,"journal":{"name":"Communications in Statistics-Simulation and Computation","volume":"6 1","pages":""},"PeriodicalIF":0.9,"publicationDate":"2024-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142259725","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}