首页 > 最新文献

Biological Cybernetics最新文献

英文 中文
Optimum trajectory learning in musculoskeletal systems with model predictive control and deep reinforcement learning. 基于模型预测控制和深度强化学习的肌肉骨骼系统最优轨迹学习。
IF 1.9 4区 工程技术 Q3 COMPUTER SCIENCE, CYBERNETICS Pub Date : 2022-12-01 DOI: 10.1007/s00422-022-00940-x
Berat Denizdurduran, Henry Markram, Marc-Oliver Gewaltig

From the computational point of view, musculoskeletal control is the problem of controlling high degrees of freedom and dynamic multi-body system that is driven by redundant muscle units. A critical challenge in the control perspective of skeletal joints with antagonistic muscle pairs is finding methods robust to address this ill-posed nonlinear problem. To address this computational problem, we implemented a twofold optimization and learning framework to be specialized in addressing the redundancies in the muscle control . In the first part, we used model predictive control to obtain energy efficient skeletal trajectories to mimick human movements. The second part is to use deep reinforcement learning to obtain a sequence of stimulus to be given to muscles in order to obtain the skeletal trajectories with muscle control. We observed that the desired stimulus to muscles is only efficiently constructed by integrating the state and control input in a closed-loop setting as it resembles the proprioceptive integration in the spinal cord circuits. In this work, we showed how a variety of different reference trajectories can be obtained with optimal control and how these reference trajectories are mapped to the musculoskeletal control with deep reinforcement learning. Starting from the characteristics of human arm movement to obstacle avoidance experiment, our simulation results confirm the capabilities of our optimization and learning framework for a variety of dynamic movement trajectories. In summary, the proposed framework is offering a pipeline to complement the lack of experiments to record human motion-capture data as well as study the activation range of muscles to replicate the specific trajectory of interest. Using the trajectories from optimal control as a reference signal for reinforcement learning implementation has allowed us to acquire optimum and human-like behaviour of the musculoskeletal system which provides a framework to study human movement in-silico experiments. The present framework can also allow studying upper-arm rehabilitation with assistive robots given that one can use healthy subject movement recordings as reference to work on the control architecture of assistive robotics in order to compensate behavioural deficiencies. Hence, the framework opens to possibility of replicating or complementing labour-intensive, time-consuming and costly experiments with human subjects in the field of movement studies and digital twin of rehabilitation.

从计算的角度来看,肌肉骨骼控制是由冗余肌肉单元驱动的高自由度动态多体系统的控制问题。在具有对抗肌肉对的骨关节控制方面,一个关键的挑战是找到鲁棒的方法来解决这种病态非线性问题。为了解决这个计算问题,我们实现了一个双重优化和学习框架,专门用于解决肌肉控制中的冗余。在第一部分中,我们使用模型预测控制来获得节能的骨骼轨迹来模仿人类运动。第二部分是利用深度强化学习来获得要给予肌肉的刺激序列,从而获得肌肉控制下的骨骼轨迹。我们观察到,对肌肉的期望刺激只有通过在闭环设置中整合状态和控制输入才能有效地构建,因为它类似于脊髓回路中的本体感觉整合。在这项工作中,我们展示了如何通过最优控制获得各种不同的参考轨迹,以及如何通过深度强化学习将这些参考轨迹映射到肌肉骨骼控制。从人体手臂运动特征到避障实验,仿真结果证实了我们的优化和学习框架对各种动态运动轨迹的能力。总之,所提出的框架提供了一个管道,以补充缺乏实验来记录人类运动捕获数据,以及研究肌肉的激活范围,以复制感兴趣的特定轨迹。使用来自最优控制的轨迹作为强化学习实施的参考信号,使我们能够获得肌肉骨骼系统的最佳和类似人类的行为,这为研究人体运动的计算机实验提供了框架。目前的框架也可以允许研究上臂康复与辅助机器人,因为一个人可以使用健康的受试者运动记录作为参考工作的控制架构的辅助机器人,以弥补行为缺陷。因此,该框架为复制或补充运动研究和康复数字孪生领域的劳动密集型、耗时和昂贵的人体实验提供了可能性。
{"title":"Optimum trajectory learning in musculoskeletal systems with model predictive control and deep reinforcement learning.","authors":"Berat Denizdurduran,&nbsp;Henry Markram,&nbsp;Marc-Oliver Gewaltig","doi":"10.1007/s00422-022-00940-x","DOIUrl":"https://doi.org/10.1007/s00422-022-00940-x","url":null,"abstract":"<p><p>From the computational point of view, musculoskeletal control is the problem of controlling high degrees of freedom and dynamic multi-body system that is driven by redundant muscle units. A critical challenge in the control perspective of skeletal joints with antagonistic muscle pairs is finding methods robust to address this ill-posed nonlinear problem. To address this computational problem, we implemented a twofold optimization and learning framework to be specialized in addressing the redundancies in the muscle control . In the first part, we used model predictive control to obtain energy efficient skeletal trajectories to mimick human movements. The second part is to use deep reinforcement learning to obtain a sequence of stimulus to be given to muscles in order to obtain the skeletal trajectories with muscle control. We observed that the desired stimulus to muscles is only efficiently constructed by integrating the state and control input in a closed-loop setting as it resembles the proprioceptive integration in the spinal cord circuits. In this work, we showed how a variety of different reference trajectories can be obtained with optimal control and how these reference trajectories are mapped to the musculoskeletal control with deep reinforcement learning. Starting from the characteristics of human arm movement to obstacle avoidance experiment, our simulation results confirm the capabilities of our optimization and learning framework for a variety of dynamic movement trajectories. In summary, the proposed framework is offering a pipeline to complement the lack of experiments to record human motion-capture data as well as study the activation range of muscles to replicate the specific trajectory of interest. Using the trajectories from optimal control as a reference signal for reinforcement learning implementation has allowed us to acquire optimum and human-like behaviour of the musculoskeletal system which provides a framework to study human movement in-silico experiments. The present framework can also allow studying upper-arm rehabilitation with assistive robots given that one can use healthy subject movement recordings as reference to work on the control architecture of assistive robotics in order to compensate behavioural deficiencies. Hence, the framework opens to possibility of replicating or complementing labour-intensive, time-consuming and costly experiments with human subjects in the field of movement studies and digital twin of rehabilitation.</p>","PeriodicalId":55374,"journal":{"name":"Biological Cybernetics","volume":"116 5-6","pages":"711-726"},"PeriodicalIF":1.9,"publicationDate":"2022-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9691497/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10326215","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Exploration of motion inhibition for the suppression of false positives in biologically inspired small target detection algorithms from a moving platform. 探索运动抑制,以抑制来自移动平台的生物启发式小目标检测算法中的误报。
IF 1.7 4区 工程技术 Q3 COMPUTER SCIENCE, CYBERNETICS Pub Date : 2022-12-01 Epub Date: 2022-10-28 DOI: 10.1007/s00422-022-00950-9
Aaron Melville-Smith, Anthony Finn, Muhammad Uzair, Russell S A Brinkworth

Detecting small moving targets against a cluttered background in visual data is a challenging task. The main problems include spatio-temporal target contrast enhancement, background suppression and accurate target segmentation. When targets are at great distances from a non-stationary camera, the difficulty of these challenges increases. In such cases the moving camera can introduce large spatial changes between frames which may cause issues in temporal algorithms; furthermore targets can approach a single pixel, thereby affecting spatial methods. Previous literature has shown that biologically inspired methods, based on the vision systems of insects, are robust to such conditions. It has also been shown that the use of divisive optic-flow inhibition with these methods enhances the detectability of small targets. However, the location within the visual pathway the inhibition should be applied was ambiguous. In this paper, we investigated the tunings of some of the optic-flow filters and use of a nonlinear transform on the optic-flow signal to modify motion responses for the purpose of suppressing false positives and enhancing small target detection. Additionally, we looked at multiple locations within the biologically inspired vision (BIV) algorithm where inhibition could further enhance detection performance, and look at driving the nonlinear transform with a global motion estimate. To get a better understanding of how the BIV algorithm performs, we compared to other state-of-the-art target detection algorithms, and look at how their performance can be enhanced with the optic-flow inhibition. Our explicit use of the nonlinear inhibition allows for the incorporation of a wider dynamic range of inhibiting signals, along with spatio-temporal filter refinement, which further increases target-background discrimination in the presence of camera motion. Extensive experiments shows that our proposed approach achieves an improvement of 25% over linearly conditioned inhibition schemes and 2.33 times the detection performance of the BIV model without inhibition. Moreover, our approach achieves between 10 and 104 times better detection performance compared to any conventional state-of-the-art moving object detection algorithm applied to the same, highly cluttered and moving scenes. Applying the nonlinear inhibition to other algorithms showed that their performance can be increased by up to 22 times. These findings show that the application of optic-flow- based signal suppression should be applied to enhance target detection from moving platforms. Furthermore, they indicate where best to look for evidence of such signals within the insect brain.

在视觉数据中检测杂乱背景下的小型移动目标是一项具有挑战性的任务。主要问题包括时空目标对比度增强、背景抑制和精确目标分割。当目标距离非稳态摄像机很远时,这些挑战的难度就会增加。在这种情况下,移动的摄像头会在帧与帧之间带来巨大的空间变化,这可能会给时间算法带来问题;此外,目标可能会接近单个像素,从而影响空间方法。以往的文献表明,基于昆虫视觉系统的生物启发方法对此类情况具有鲁棒性。还有研究表明,在这些方法中使用分裂光流抑制,可以提高对小目标的检测能力。然而,在视觉通路中应用抑制的位置并不明确。在本文中,我们研究了一些视流滤波器的调谐,并使用视流信号的非线性变换来改变运动反应,以抑制假阳性并增强小目标的检测能力。此外,我们还研究了生物启发视觉(BIV)算法中的多个位置,在这些位置进行抑制可进一步提高检测性能,并研究了用全局运动估计来驱动非线性变换的方法。为了更好地了解 BIV 算法的性能,我们将其与其他最先进的目标检测算法进行了比较,并研究了如何利用视流抑制来提高其性能。我们对非线性抑制的明确使用,使得抑制信号的动态范围更广,同时还能对时空滤波器进行细化,从而在摄像机运动的情况下进一步提高目标-背景分辨能力。大量实验表明,我们提出的方法比线性条件抑制方案提高了 25%,是无抑制 BIV 模型检测性能的 2.33 倍。此外,与应用于相同、高度杂乱和移动场景的任何传统先进移动物体检测算法相比,我们的方法的检测性能提高了 10 到 104 倍。将非线性抑制应用于其他算法的结果表明,它们的性能最多可提高 22 倍。这些研究结果表明,应该应用基于光流的信号抑制来增强移动平台的目标检测能力。此外,它们还指出了在昆虫大脑中寻找此类信号证据的最佳位置。
{"title":"Exploration of motion inhibition for the suppression of false positives in biologically inspired small target detection algorithms from a moving platform.","authors":"Aaron Melville-Smith, Anthony Finn, Muhammad Uzair, Russell S A Brinkworth","doi":"10.1007/s00422-022-00950-9","DOIUrl":"10.1007/s00422-022-00950-9","url":null,"abstract":"<p><p>Detecting small moving targets against a cluttered background in visual data is a challenging task. The main problems include spatio-temporal target contrast enhancement, background suppression and accurate target segmentation. When targets are at great distances from a non-stationary camera, the difficulty of these challenges increases. In such cases the moving camera can introduce large spatial changes between frames which may cause issues in temporal algorithms; furthermore targets can approach a single pixel, thereby affecting spatial methods. Previous literature has shown that biologically inspired methods, based on the vision systems of insects, are robust to such conditions. It has also been shown that the use of divisive optic-flow inhibition with these methods enhances the detectability of small targets. However, the location within the visual pathway the inhibition should be applied was ambiguous. In this paper, we investigated the tunings of some of the optic-flow filters and use of a nonlinear transform on the optic-flow signal to modify motion responses for the purpose of suppressing false positives and enhancing small target detection. Additionally, we looked at multiple locations within the biologically inspired vision (BIV) algorithm where inhibition could further enhance detection performance, and look at driving the nonlinear transform with a global motion estimate. To get a better understanding of how the BIV algorithm performs, we compared to other state-of-the-art target detection algorithms, and look at how their performance can be enhanced with the optic-flow inhibition. Our explicit use of the nonlinear inhibition allows for the incorporation of a wider dynamic range of inhibiting signals, along with spatio-temporal filter refinement, which further increases target-background discrimination in the presence of camera motion. Extensive experiments shows that our proposed approach achieves an improvement of 25% over linearly conditioned inhibition schemes and 2.33 times the detection performance of the BIV model without inhibition. Moreover, our approach achieves between 10 and 104 times better detection performance compared to any conventional state-of-the-art moving object detection algorithm applied to the same, highly cluttered and moving scenes. Applying the nonlinear inhibition to other algorithms showed that their performance can be increased by up to 22 times. These findings show that the application of optic-flow- based signal suppression should be applied to enhance target detection from moving platforms. Furthermore, they indicate where best to look for evidence of such signals within the insect brain.</p>","PeriodicalId":55374,"journal":{"name":"Biological Cybernetics","volume":"116 5-6","pages":"661-685"},"PeriodicalIF":1.7,"publicationDate":"2022-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9691501/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10317548","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Contrast independent biologically inspired translational optic flow estimation. 对比独立的生物启发平移光流估计。
IF 1.9 4区 工程技术 Q3 COMPUTER SCIENCE, CYBERNETICS Pub Date : 2022-12-01 DOI: 10.1007/s00422-022-00948-3
Phillip S M Skelton, Anthony Finn, Russell S A Brinkworth

The visual systems of insects are relatively simple compared to humans. However, they enable navigation through complex environments where insects perform exceptional levels of obstacle avoidance. Biology uses two separable modes of optic flow to achieve this: rapid gaze fixation (rotational motion known as saccades); and the inter-saccadic translational motion. While the fundamental process of insect optic flow has been known since the 1950's, so too has its dependence on contrast. The surrounding visual pathways used to overcome environmental dependencies are less well known. Previous work has shown promise for low-speed rotational motion estimation, but a gap remained in the estimation of translational motion, in particular the estimation of the time to impact. To consistently estimate the time to impact during inter-saccadic translatory motion, the fundamental limitation of contrast dependence must be overcome. By adapting an elaborated rotational velocity estimator from literature to work for translational motion, this paper proposes a novel algorithm for overcoming the contrast dependence of time to impact estimation using nonlinear spatio-temporal feedforward filtering. By applying bioinspired processes, approximately 15 points per decade of statistical discrimination were achieved when estimating the time to impact to a target across 360 background, distance, and velocity combinations: a 17-fold increase over the fundamental process. These results show the contrast dependence of time to impact estimation can be overcome in a biologically plausible manner. This, combined with previous results for low-speed rotational motion estimation, allows for contrast invariant computational models designed on the principles found in the biological visual system, paving the way for future visually guided systems.

与人类相比,昆虫的视觉系统相对简单。然而,它们使昆虫能够在复杂的环境中导航,而昆虫在复杂的环境中表现出特殊的避障能力。生物学使用两种可分离的光流模式来实现这一点:快速凝视固定(称为扫视的旋转运动);以及跳跃间平移运动。虽然昆虫光流的基本过程自20世纪50年代以来就已为人所知,但它对对比度的依赖也已为人所知。用于克服环境依赖性的周围视觉通路鲜为人知。先前的工作已经显示出低速旋转运动估计的希望,但在平移运动估计方面仍然存在差距,特别是对撞击时间的估计。为了在跳间平移运动中一致地估计撞击时间,必须克服对比依赖的基本限制。本文提出了一种新的算法,利用非线性时空前馈滤波,克服了时间对冲击估计的对比度依赖性。通过应用生物启发过程,在估计在360个背景、距离和速度组合中撞击目标的时间时,每十年的统计差别约为15点:比基本过程增加了17倍。这些结果表明,时间对影响估计的对比依赖性可以以生物学上合理的方式克服。这与先前低速旋转运动估计的结果相结合,允许在生物视觉系统中发现的原理上设计对比度不变计算模型,为未来的视觉引导系统铺平道路。
{"title":"Contrast independent biologically inspired translational optic flow estimation.","authors":"Phillip S M Skelton,&nbsp;Anthony Finn,&nbsp;Russell S A Brinkworth","doi":"10.1007/s00422-022-00948-3","DOIUrl":"https://doi.org/10.1007/s00422-022-00948-3","url":null,"abstract":"<p><p>The visual systems of insects are relatively simple compared to humans. However, they enable navigation through complex environments where insects perform exceptional levels of obstacle avoidance. Biology uses two separable modes of optic flow to achieve this: rapid gaze fixation (rotational motion known as saccades); and the inter-saccadic translational motion. While the fundamental process of insect optic flow has been known since the 1950's, so too has its dependence on contrast. The surrounding visual pathways used to overcome environmental dependencies are less well known. Previous work has shown promise for low-speed rotational motion estimation, but a gap remained in the estimation of translational motion, in particular the estimation of the time to impact. To consistently estimate the time to impact during inter-saccadic translatory motion, the fundamental limitation of contrast dependence must be overcome. By adapting an elaborated rotational velocity estimator from literature to work for translational motion, this paper proposes a novel algorithm for overcoming the contrast dependence of time to impact estimation using nonlinear spatio-temporal feedforward filtering. By applying bioinspired processes, approximately 15 points per decade of statistical discrimination were achieved when estimating the time to impact to a target across 360 background, distance, and velocity combinations: a 17-fold increase over the fundamental process. These results show the contrast dependence of time to impact estimation can be overcome in a biologically plausible manner. This, combined with previous results for low-speed rotational motion estimation, allows for contrast invariant computational models designed on the principles found in the biological visual system, paving the way for future visually guided systems.</p>","PeriodicalId":55374,"journal":{"name":"Biological Cybernetics","volume":"116 5-6","pages":"635-660"},"PeriodicalIF":1.9,"publicationDate":"2022-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9691503/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10382668","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Integration of velocity-dependent spatio-temporal structure of place cell activation during navigation in a reservoir model of prefrontal cortex. 前额皮质储层模型中导航过程中位置细胞激活的速度依赖时空结构整合。
IF 1.9 4区 工程技术 Q3 COMPUTER SCIENCE, CYBERNETICS Pub Date : 2022-12-01 DOI: 10.1007/s00422-022-00945-6
Pablo Scleidorovich, Alfredo Weitzenfeld, Jean-Marc Fellous, Peter Ford Dominey

Sequential behavior unfolds both in space and in time. The same spatial trajectory can be realized in different manners in the same overall time by changing instantaneous speeds. The current research investigates how speed profiles might be given behavioral significance and how cortical networks might encode this information. We first demonstrate that rats can associate different speed patterns on the same trajectory with distinct behavioral choices. In this novel experimental paradigm, rats follow a small baited robot in a large megaspace environment where the rat's speed is precisely controlled by the robot's speed. Based on this proof of concept and research showing that recurrent reservoir networks are ideal for representing spatio-temporal structures, we then test reservoir networks in simulated navigation contexts and demonstrate they can discriminate between traversals of the same path with identical durations but different speed profiles. We then test the networks in an embodied robotic setup, where we use place cell representations from physically navigating robots as input and again successfully discriminate between traversals. To demonstrate that this capability is inherent to recurrent networks, we compared the model against simple linear integrators. Interestingly, although the linear integrators could also perform the speed profile discrimination, a clear difference emerged when examining information coding in both models. Reservoir neurons displayed a form of statistical mixed selectivity as a complex interaction between spatial location and speed that was not as abundant in the linear integrators. This mixed selectivity is characteristic of cortex and reservoirs and allows us to generate specific predictions about the neural activity that will be recorded in rat cortex in future experiments.

顺序行为在空间和时间上都展开。通过改变瞬时速度,可以在相同的总时间内以不同的方式实现相同的空间轨迹。目前的研究调查了速度曲线如何被赋予行为意义,以及皮质网络如何对这些信息进行编码。我们首先证明,老鼠可以将同一轨迹上不同的速度模式与不同的行为选择联系起来。在这个新颖的实验范式中,老鼠在一个巨大的空间环境中跟随一个装有诱饵的小型机器人,在这个环境中,老鼠的速度被机器人的速度精确控制。基于这一概念证明和研究表明,循环水库网络是表征时空结构的理想选择,我们随后在模拟导航环境中测试水库网络,并证明它们可以区分具有相同持续时间但不同速度剖面的相同路径的遍历。然后,我们在一个具体的机器人设置中测试网络,在那里我们使用来自物理导航机器人的位置细胞表示作为输入,并再次成功区分遍历。为了证明这种能力是循环网络固有的,我们将模型与简单的线性积分器进行了比较。有趣的是,尽管线性积分器也可以执行速度轮廓判别,但在检查两种模型中的信息编码时出现了明显的差异。存储神经元表现出一种统计混合选择性,作为空间位置和速度之间的复杂相互作用,这在线性积分器中并不丰富。这种混合选择性是皮层和储存器的特征,它使我们能够对神经活动产生特定的预测,这些预测将在未来的实验中记录在大鼠皮层中。
{"title":"Integration of velocity-dependent spatio-temporal structure of place cell activation during navigation in a reservoir model of prefrontal cortex.","authors":"Pablo Scleidorovich,&nbsp;Alfredo Weitzenfeld,&nbsp;Jean-Marc Fellous,&nbsp;Peter Ford Dominey","doi":"10.1007/s00422-022-00945-6","DOIUrl":"https://doi.org/10.1007/s00422-022-00945-6","url":null,"abstract":"<p><p>Sequential behavior unfolds both in space and in time. The same spatial trajectory can be realized in different manners in the same overall time by changing instantaneous speeds. The current research investigates how speed profiles might be given behavioral significance and how cortical networks might encode this information. We first demonstrate that rats can associate different speed patterns on the same trajectory with distinct behavioral choices. In this novel experimental paradigm, rats follow a small baited robot in a large megaspace environment where the rat's speed is precisely controlled by the robot's speed. Based on this proof of concept and research showing that recurrent reservoir networks are ideal for representing spatio-temporal structures, we then test reservoir networks in simulated navigation contexts and demonstrate they can discriminate between traversals of the same path with identical durations but different speed profiles. We then test the networks in an embodied robotic setup, where we use place cell representations from physically navigating robots as input and again successfully discriminate between traversals. To demonstrate that this capability is inherent to recurrent networks, we compared the model against simple linear integrators. Interestingly, although the linear integrators could also perform the speed profile discrimination, a clear difference emerged when examining information coding in both models. Reservoir neurons displayed a form of statistical mixed selectivity as a complex interaction between spatial location and speed that was not as abundant in the linear integrators. This mixed selectivity is characteristic of cortex and reservoirs and allows us to generate specific predictions about the neural activity that will be recorded in rat cortex in future experiments.</p>","PeriodicalId":55374,"journal":{"name":"Biological Cybernetics","volume":"116 5-6","pages":"585-610"},"PeriodicalIF":1.9,"publicationDate":"2022-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10322962","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Bursting hierarchy in an adaptive exponential integrate-and-fire network synchronization. 自适应指数型集火网络同步中的爆发层次。
IF 1.9 4区 工程技术 Q3 COMPUTER SCIENCE, CYBERNETICS Pub Date : 2022-12-01 DOI: 10.1007/s00422-022-00942-9
Congping Lin, Xiaoyue Wu, Yiwei Zhang

Neuronal network synchronization has received wide interest. In the present manuscript, we study the influence of initial membrane potentials together with network topology on bursting synchronization, in particular the sequential order of stabilized bursting among neurons. We find a hierarchical phenomenon on their bursting order. With a focus on situations where network coupling advances spiking times of neurons, we grade neurons into different layers. Together with the neuronal network structure, we construct directed graphs to indicate bursting propagation between different layers. More explicitly, neurons in upper layers burst earlier than those in lower layers. More interestingly, we find that among the same layer, bursting order of neurons is mainly associated with the number of neurons they connected to the upper layer; more stimuli lead to earlier bursting. Receiving effectively the same stimuli from the upper layer, we observe neurons with fewer connections would burst earlier.

神经网络同步已受到广泛关注。在本文中,我们研究了初始膜电位和网络拓扑对爆发同步的影响,特别是神经元之间稳定爆发的顺序。我们在它们的爆发顺序上发现了一种等级现象。关注网络耦合提前神经元峰值时间的情况,我们将神经元划分为不同的层。结合神经网络结构,构造有向图来表示爆炸在不同层之间的传播。更明显的是,上层神经元比下层神经元更早破裂。更有趣的是,我们发现在同一层中,神经元的破裂顺序主要与它们连接到上层的神经元数量有关;更多的刺激导致更早的破裂。我们观察到,从上层有效接收相同的刺激时,连接较少的神经元会更早爆发。
{"title":"Bursting hierarchy in an adaptive exponential integrate-and-fire network synchronization.","authors":"Congping Lin,&nbsp;Xiaoyue Wu,&nbsp;Yiwei Zhang","doi":"10.1007/s00422-022-00942-9","DOIUrl":"https://doi.org/10.1007/s00422-022-00942-9","url":null,"abstract":"<p><p>Neuronal network synchronization has received wide interest. In the present manuscript, we study the influence of initial membrane potentials together with network topology on bursting synchronization, in particular the sequential order of stabilized bursting among neurons. We find a hierarchical phenomenon on their bursting order. With a focus on situations where network coupling advances spiking times of neurons, we grade neurons into different layers. Together with the neuronal network structure, we construct directed graphs to indicate bursting propagation between different layers. More explicitly, neurons in upper layers burst earlier than those in lower layers. More interestingly, we find that among the same layer, bursting order of neurons is mainly associated with the number of neurons they connected to the upper layer; more stimuli lead to earlier bursting. Receiving effectively the same stimuli from the upper layer, we observe neurons with fewer connections would burst earlier.</p>","PeriodicalId":55374,"journal":{"name":"Biological Cybernetics","volume":"116 5-6","pages":"545-556"},"PeriodicalIF":1.9,"publicationDate":"2022-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10326246","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Variational and phase response analysis for limit cycles with hard boundaries, with applications to neuromechanical control problems. 具有硬边界的极限循环的变量和相位响应分析,并应用于神经机械控制问题。
IF 1.7 4区 工程技术 Q3 COMPUTER SCIENCE, CYBERNETICS Pub Date : 2022-12-01 Epub Date: 2022-11-18 DOI: 10.1007/s00422-022-00951-8
Yangyang Wang, Jeffrey P Gill, Hillel J Chiel, Peter J Thomas

Motor systems show an overall robustness, but because they are highly nonlinear, understanding how they achieve robustness is difficult. In many rhythmic systems, robustness against perturbations involves response of both the shape and the timing of the trajectory. This makes the study of robustness even more challenging. To understand how a motor system produces robust behaviors in a variable environment, we consider a neuromechanical model of motor patterns in the feeding apparatus of the marine mollusk Aplysia californica (Shaw et al. in J Comput Neurosci 38(1):25-51, 2015; Lyttle et al. in Biol Cybern 111(1):25-47, 2017). We established in (Wang et al. in SIAM J Appl Dyn Syst 20(2):701-744, 2021. https://doi.org/10.1137/20M1344974 ) the tools for studying combined shape and timing responses of limit cycle systems under sustained perturbations and here apply them to study robustness of the neuromechanical model against increased mechanical load during swallowing. Interestingly, we discover that nonlinear biomechanical properties confer resilience by immediately increasing resistance to applied loads. In contrast, the effect of changed sensory feedback signal is significantly delayed by the firing rates' hard boundary properties. Our analysis suggests that sensory feedback contributes to robustness in swallowing primarily by shifting the timing of neural activation involved in the power stroke of the motor cycle (retraction). This effect enables the system to generate stronger retractor muscle forces to compensate for the increased load, and hence achieve strong robustness. The approaches that we are applying to understanding a neuromechanical model in Aplysia, and the results that we have obtained, are likely to provide insights into the function of other motor systems that encounter changing mechanical loads and hard boundaries, both due to mechanical and neuronal firing properties.

运动系统显示出整体稳健性,但由于它们是高度非线性的,因此很难理解它们是如何实现稳健性的。在许多节律系统中,对扰动的稳健性涉及对轨迹的形状和时间的响应。这使得鲁棒性研究更具挑战性。为了了解运动系统如何在多变的环境中产生稳健行为,我们考虑了海洋软体动物 Aplysia californica 摄食装置中运动模式的神经机械模型(Shaw 等人,发表于《计算神经科学》(J Comput Neurosci)38(1):25-51, 2015;Lyttle 等人,发表于《生物网络》(Biol Cybern)111(1):25-47, 2017)。我们在(Wang 等人在 SIAM J Appl Dyn Syst 20(2):701-744, 2021. https://doi.org/10.1137/20M1344974 )中建立了研究极限循环系统在持续扰动下的形状和时间综合响应的工具,并在此将其应用于研究吞咽过程中神经机械模型对机械负荷增加的鲁棒性。有趣的是,我们发现非线性生物力学特性通过立即增加对外加载荷的阻力来赋予复原力。与此相反,感觉反馈信号变化的影响却因发射率的硬边界特性而明显延迟。我们的分析表明,感觉反馈主要通过改变参与运动循环动力冲程(缩回)的神经激活时间来提高吞咽的稳健性。这种效应使系统能够产生更强的牵张肌力,以补偿增加的负荷,从而实现强大的稳健性。我们正在应用的用于理解臀足纲动物神经机械模型的方法以及我们所获得的结果,很有可能为其他运动系统的功能提供启示,这些系统在遇到不断变化的机械负荷和硬边界时,都会受到机械和神经元发射特性的影响。
{"title":"Variational and phase response analysis for limit cycles with hard boundaries, with applications to neuromechanical control problems.","authors":"Yangyang Wang, Jeffrey P Gill, Hillel J Chiel, Peter J Thomas","doi":"10.1007/s00422-022-00951-8","DOIUrl":"10.1007/s00422-022-00951-8","url":null,"abstract":"<p><p>Motor systems show an overall robustness, but because they are highly nonlinear, understanding how they achieve robustness is difficult. In many rhythmic systems, robustness against perturbations involves response of both the shape and the timing of the trajectory. This makes the study of robustness even more challenging. To understand how a motor system produces robust behaviors in a variable environment, we consider a neuromechanical model of motor patterns in the feeding apparatus of the marine mollusk Aplysia californica (Shaw et al. in J Comput Neurosci 38(1):25-51, 2015; Lyttle et al. in Biol Cybern 111(1):25-47, 2017). We established in (Wang et al. in SIAM J Appl Dyn Syst 20(2):701-744, 2021. https://doi.org/10.1137/20M1344974 ) the tools for studying combined shape and timing responses of limit cycle systems under sustained perturbations and here apply them to study robustness of the neuromechanical model against increased mechanical load during swallowing. Interestingly, we discover that nonlinear biomechanical properties confer resilience by immediately increasing resistance to applied loads. In contrast, the effect of changed sensory feedback signal is significantly delayed by the firing rates' hard boundary properties. Our analysis suggests that sensory feedback contributes to robustness in swallowing primarily by shifting the timing of neural activation involved in the power stroke of the motor cycle (retraction). This effect enables the system to generate stronger retractor muscle forces to compensate for the increased load, and hence achieve strong robustness. The approaches that we are applying to understanding a neuromechanical model in Aplysia, and the results that we have obtained, are likely to provide insights into the function of other motor systems that encounter changing mechanical loads and hard boundaries, both due to mechanical and neuronal firing properties.</p>","PeriodicalId":55374,"journal":{"name":"Biological Cybernetics","volume":"116 5-6","pages":"687-710"},"PeriodicalIF":1.7,"publicationDate":"2022-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9691512/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9129068","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comparison of event-related modulation index and traditional methods for evaluating phase-amplitude coupling using simulated brain signals. 事件相关调制指数与利用模拟脑信号评价相幅耦合的传统方法的比较。
IF 1.9 4区 工程技术 Q3 COMPUTER SCIENCE, CYBERNETICS Pub Date : 2022-12-01 DOI: 10.1007/s00422-022-00944-7
Chung-Chieh Tsai, Hong-Hsiang Liu, Yi-Li Tseng

The investigation of brain oscillations and connectivity has become an important topic in the recent decade. There are several types of interactions between neuronal oscillations, and one of the most interesting among these interactions is phase-amplitude coupling (PAC). Several methods have been proposed to measure the strength of PAC, including the phase-locking value, circular-linear correlation, and modulation index. In the current study, we compared these traditional PAC methods with simulated electroencephalogram signals. Further, to assess the PAC value at each time point, we also compared two recently established methods, event-related phase-locking value and event-related circular-linear correlation, with our newly proposed event-related modulation index (ERMI). Results indicated that the ERMI has better temporal resolution and is more tolerant to noise than the other two event-related methods, suggesting the advantages of utilizing ERMI in evaluating the strength of PAC within a brain region.

近十年来,对脑振荡和连通性的研究已成为一个重要的课题。神经元振荡之间有几种类型的相互作用,其中最有趣的相互作用之一是相幅耦合(PAC)。已经提出了几种测量PAC强度的方法,包括锁相值、圆线性相关和调制指数。在本研究中,我们将这些传统的PAC方法与模拟脑电图信号进行了比较。此外,为了评估每个时间点的PAC值,我们还将最近建立的两种方法(事件相关锁相值和事件相关圆线性相关)与我们新提出的事件相关调制指数(ERMI)进行了比较。结果表明,与其他两种事件相关方法相比,ERMI具有更好的时间分辨率和对噪声的容忍度,表明利用ERMI评估脑区域内PAC强度的优势。
{"title":"Comparison of event-related modulation index and traditional methods for evaluating phase-amplitude coupling using simulated brain signals.","authors":"Chung-Chieh Tsai,&nbsp;Hong-Hsiang Liu,&nbsp;Yi-Li Tseng","doi":"10.1007/s00422-022-00944-7","DOIUrl":"https://doi.org/10.1007/s00422-022-00944-7","url":null,"abstract":"<p><p>The investigation of brain oscillations and connectivity has become an important topic in the recent decade. There are several types of interactions between neuronal oscillations, and one of the most interesting among these interactions is phase-amplitude coupling (PAC). Several methods have been proposed to measure the strength of PAC, including the phase-locking value, circular-linear correlation, and modulation index. In the current study, we compared these traditional PAC methods with simulated electroencephalogram signals. Further, to assess the PAC value at each time point, we also compared two recently established methods, event-related phase-locking value and event-related circular-linear correlation, with our newly proposed event-related modulation index (ERMI). Results indicated that the ERMI has better temporal resolution and is more tolerant to noise than the other two event-related methods, suggesting the advantages of utilizing ERMI in evaluating the strength of PAC within a brain region.</p>","PeriodicalId":55374,"journal":{"name":"Biological Cybernetics","volume":"116 5-6","pages":"569-583"},"PeriodicalIF":1.9,"publicationDate":"2022-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10671428","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Extreme Image Transformations Affect Humans and Machines Differently 极端图像变换对人类和机器的影响是不同的
IF 1.9 4区 工程技术 Q3 COMPUTER SCIENCE, CYBERNETICS Pub Date : 2022-11-30 DOI: 10.48550/arXiv.2212.13967
Girik Malik, Dakarai Crowder, E. Mingolla
Some recent artificial neural networks (ANNs) claim to model aspects of primate neural and human performance data. Their success in object recognition is, however, dependent on exploiting low-level features for solving visual tasks in a way that humans do not. As a result, out-of-distribution or adversarial input is often challenging for ANNs. Humans instead learn abstract patterns and are mostly unaffected by many extreme image distortions. We introduce a set of novel image transforms inspired by neurophysiological findings and evaluate humans and ANNs on an object recognition task. We show that machines perform better than humans for certain transforms and struggle to perform at par with humans on others that are easy for humans. We quantify the differences in accuracy for humans and machines and find a ranking of difficulty for our transforms for human data. We also suggest how certain characteristics of human visual processing can be adapted to improve the performance of ANNs for our difficult-for-machines transforms.
最近的一些人工神经网络声称可以对灵长类动物的神经和人类表现数据进行建模。然而,他们在物体识别方面的成功取决于利用低级特征来解决视觉任务,而人类却没有。因此,分布外或对抗性输入对Ann来说往往是一个挑战。相反,人类学习抽象模式,并且大多不受许多极端图像失真的影响。我们介绍了一组受神经生理学发现启发的新颖图像转换,并在对象识别任务中评估了人类和人工神经网络。我们证明,机器在某些转变方面比人类表现得更好,而在其他对人类来说很容易的转变方面,机器的表现却难以与人类持平。我们量化了人类和机器在准确性方面的差异,并找到了人类数据转换的难度排名。我们还建议如何调整人类视觉处理的某些特征,以提高人工神经网络在机器转换中的性能。
{"title":"Extreme Image Transformations Affect Humans and Machines Differently","authors":"Girik Malik, Dakarai Crowder, E. Mingolla","doi":"10.48550/arXiv.2212.13967","DOIUrl":"https://doi.org/10.48550/arXiv.2212.13967","url":null,"abstract":"Some recent artificial neural networks (ANNs) claim to model aspects of primate neural and human performance data. Their success in object recognition is, however, dependent on exploiting low-level features for solving visual tasks in a way that humans do not. As a result, out-of-distribution or adversarial input is often challenging for ANNs. Humans instead learn abstract patterns and are mostly unaffected by many extreme image distortions. We introduce a set of novel image transforms inspired by neurophysiological findings and evaluate humans and ANNs on an object recognition task. We show that machines perform better than humans for certain transforms and struggle to perform at par with humans on others that are easy for humans. We quantify the differences in accuracy for humans and machines and find a ranking of difficulty for our transforms for human data. We also suggest how certain characteristics of human visual processing can be adapted to improve the performance of ANNs for our difficult-for-machines transforms.","PeriodicalId":55374,"journal":{"name":"Biological Cybernetics","volume":"1 1","pages":""},"PeriodicalIF":1.9,"publicationDate":"2022-11-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44875864","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Dissecting cell fate dynamics in pediatric glioblastoma through the lens of complex systems and cellular cybernetics 通过复杂系统和细胞控制论的视角解剖小儿胶质母细胞瘤的细胞命运动力学
IF 1.9 4区 工程技术 Q3 COMPUTER SCIENCE, CYBERNETICS Pub Date : 2022-06-09 DOI: 10.1007/s00422-022-00935-8
A. Uthamacumaran
{"title":"Dissecting cell fate dynamics in pediatric glioblastoma through the lens of complex systems and cellular cybernetics","authors":"A. Uthamacumaran","doi":"10.1007/s00422-022-00935-8","DOIUrl":"https://doi.org/10.1007/s00422-022-00935-8","url":null,"abstract":"","PeriodicalId":55374,"journal":{"name":"Biological Cybernetics","volume":"116 1","pages":"407 - 445"},"PeriodicalIF":1.9,"publicationDate":"2022-06-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43382548","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Optimal reaching trajectories based on feedforward control 基于前馈控制的最优到达轨迹
IF 1.9 4区 工程技术 Q3 COMPUTER SCIENCE, CYBERNETICS Pub Date : 2022-06-04 DOI: 10.1007/s00422-022-00939-4
Y. Taniai, T. Naniwa, J. Nishii
{"title":"Optimal reaching trajectories based on feedforward control","authors":"Y. Taniai, T. Naniwa, J. Nishii","doi":"10.1007/s00422-022-00939-4","DOIUrl":"https://doi.org/10.1007/s00422-022-00939-4","url":null,"abstract":"","PeriodicalId":55374,"journal":{"name":"Biological Cybernetics","volume":"116 1","pages":"517 - 526"},"PeriodicalIF":1.9,"publicationDate":"2022-06-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49023738","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
期刊
Biological Cybernetics
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1