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Genetic diversity and population structure of Anatolian Hair goats, an ancient breed. 古老品种安纳托利亚毛山羊的遗传多样性和种群结构。
IF 1.6 3区 农林科学 Q2 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2024-01-11 eCollection Date: 2024-01-01 DOI: 10.5194/aab-67-13-2024
Aylin Demiray, Zühal Gündüz, Nezih Ata, Onur Yılmaz, İbrahim Cemal, Aynur Konyalı, Zeynep Semen, Arif Altuntaş, Ali Atik, Ahmet Akçay, Hüseyin Baş, Hasan Hüseyin Şenyüz

This study aimed to investigate the genetic characterization and diversity of Hair goats from 10 regions using 20 microsatellite markers. A total of 522 alleles were observed. The INRA0023 locus exhibited the greatest number of alleles (48), while the DRBP1 locus had the highest effective allele number (16.27), and the BM1818 and DRBP1 loci had the highest polymorphic information content value (0.94). The expected heterozygosity value ranged from 0.85 (ILSTS011) to 0.94 (BM1818, SRCRSP15, and DRBP1). The Hair goat populations in Konya and Hatay displayed the lowest and highest allele numbers, with values of 10.40 and 16.25, respectively. The fixation index ( F IS ) values are significant in defining population structures and determining the extent of heterozygosity losses. The F IS values exhibited a range of 0.031 in Muǧla to 0.226 in Burdur. A total of 107 unique alleles were identified in Hair goat populations. However, it is noteworthy that, out of all the alleles, only 25 had a frequency exceeding 5 %. The results indicate that the microsatellite markers utilized demonstrate sufficient levels of polymorphism, making them appropriate for efficiently investigating the genetic variability of Hair goat populations.

利用20个微卫星标记,研究了中国10个地区毛山羊的遗传特征和多样性。共检测到522个等位基因。INRA0023位点的有效等位基因数最多(48个),DRBP1位点的有效等位基因数最多(16.27个),BM1818和DRBP1位点的多态性信息含量值最高(0.94)。期望杂合度值从0.85 (ILSTS011)到0.94 (BM1818、SRCRSP15和DRBP1)不等。科尼亚和哈塔伊毛山羊群体等位基因数量最少,分别为10.40和16.25。固定指数(fis)值在确定种群结构和确定杂合性损失程度方面具有重要意义。Burdur的fis值在Muǧla ~ 0.226之间为0.031。在毛山羊群体中共鉴定出107个独特等位基因。然而,值得注意的是,在所有等位基因中,只有25个等位基因的频率超过5. %。结果表明,所利用的微卫星标记具有足够的多态性水平,可以有效地研究毛山羊群体的遗传变异性。
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引用次数: 0
The effect of nanosilver-based preparation on microbiological quality of poultry litter. 纳米银制剂对家禽粪便微生物质量的影响
3区 农林科学 Q2 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2023-12-11 eCollection Date: 2023-01-01 DOI: 10.5194/aab-66-421-2023
Katarzyna Czyż, Zbigniew Dobrzański, Monika Kowalska-Góralska, Magdalena Senze, Anna Wyrostek

The study aimed to examine an effect of the preparation based on nanosilver suspension on mineral carrier on poultry litter microbiological profile. The study was conducted on Ross 308 broiler chickens. Three groups were formed, 84 birds in each. Preparation used in the study was composed of aqueous nanosilver suspension sprayed on mineral sorbent. Birds were maintained on straw-sawdust litter; the groups were differentiated due to preparation application (C - control without preparation, I - preparation applied once at the beginning, II - preparation added each week). Pooled litter samples were collected from the top layer of the litter (six samplings) in order to determine mesophilic bacteria count. Additionally, on the last day of the experiment litter samples were collected from three points (by drinker, feeder, pen corner) to analyze the total number of microorganisms, Salmonella spp., Escherichia coli, Enterococci, and molds. In the case of mesophilic bacteria count, the highest decrease was noted for group II. Total number of microorganisms determined in various points of the pen did not give clear relationship; in some cases even an increase was found. Salmonella spp. decreased as a result of preparation addition; the highest decrease was noted for samples collected by feeders. The results for Escherichia coli are not unequivocal. However, a decrease was found in the case of drinkers and feeders compared to control, especially in group II. An addition of preparation caused a decrease in Enterococci, especially for samples collected by feeders in group II. Similar tendency was found for molds. The study demonstrated that the preparation exhibits bactericidal properties. However, its effect varies depending on microorganism kind and sample collection point.

该研究旨在考察基于矿物载体的纳米银悬浮液制剂对家禽粪便微生物特征的影响。研究对象是 Ross 308 肉鸡。共分三组,每组 84 只。研究中使用的制剂由喷洒在矿物吸附剂上的纳米银水悬浮液组成。鸡只饲养在稻草-锯末垃圾上;根据制剂的使用情况对各组进行区分(C - 无制剂对照组,I - 开始时使用一次制剂,II - 每周添加一次制剂)。为了测定嗜中性细菌的数量,我们从垃圾的最上层收集了垃圾样本(6 份样本)。此外,在实验的最后一天,还从三个点(饮水器、喂食器、栏角)采集粪便样本,以分析微生物总数、沙门氏菌属、大肠杆菌、肠球菌和霉菌。在嗜中性细菌数量方面,第二组的降幅最大。在栏内各点测定的微生物总数并没有明显的关系;在某些情况下甚至发现有所增加。添加制剂后,沙门氏菌属数量减少;饲养员采集的样本中沙门氏菌属数量减少最多。大肠埃希氏菌的结果并不明确。不过,与对照组相比,饮用者和喂食者的大肠杆菌都有所减少,尤其是第二组。添加制剂导致肠球菌减少,尤其是在第二组中由喂食者采集的样本中。霉菌也有类似的趋势。研究表明,该制剂具有杀菌特性。不过,其效果因微生物种类和样品采集点的不同而不同。
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引用次数: 0
Detection of genetic variations in the GDF9 and BMP15 genes in Kazakh meat-wool sheep. 哈萨克肉毛羊 GDF9 和 BMP15 基因的遗传变异检测。
3区 农林科学 Q2 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2023-12-07 eCollection Date: 2023-01-01 DOI: 10.5194/aab-66-401-2023
Makpal Amandykova, Zarina Orazymbetova, Tilek Kapassuly, Altynay Kozhakhmet, Saltanat Khamzina, Kairat Iskakov, Kairat Dossybayev

Kazakh meat-wool sheep are of great interest because of the intrabreed multifetal type's high productivity of 140 %-160 %. Genes encoding growth differentiation factor-9 (GDF9) and bone morphogenetic protein 15 (BMP15) are promising candidates for studying sheep productivity, as they affect fertility in mammals, including sheep. Thus, the purpose of this study was to assess the fertility of the Kazakh meat-wool sheep breed based on GDF9 and BMP15 candidate genes of fecundity for the selection of animals with valuable genotypes. We selected 300 heads of the Kazakh meat-wool sheep breed from two populations for PCR-RFLP (polymerase chain reaction-restriction fragment length polymorphism) analysis, 15 of which were subsequently used for sequencing of exon regions of the GDF9 and BMP15 genes. The sheep populations were tested for G1 and G8 mutations of the GDF9 gene and B2 and B4 mutations of the BMP15 gene. The PCR-RFLP analysis revealed that 59 (19.7 %) of the 300 Kazakh meat-wool breed sheep were heterozygous carriers of the G1 mutation (genotype AG) of the GDF9 gene, and sequencing analysis supported these results. The comparative phylogenetic analysis showed a clear separation of Kazakh meat-wool sheep wild types and carriers of the G1 mutation. This mutation was reported to have a relationship with the animals' litter size in other sheep breeds. For this reason, similar relationships should be investigated in Kazakh meat-wool sheep. However, G8, B2, and B4 mutations were not detected among the studied animal populations, showing that these mutations are not characteristic of the Kazakh meat-wool sheep breed.

哈萨克肉毛羊的繁殖率高达 140%-160%,因此备受关注。编码生长分化因子-9(GDF9)和骨形态发生蛋白15(BMP15)的基因是研究绵羊繁殖力的理想候选基因,因为它们会影响哺乳动物(包括绵羊)的繁殖力。因此,本研究的目的是根据 GDF9 和 BMP15 候选繁殖力基因评估哈萨克肉毛羊品种的繁殖力,以筛选出有价值的基因型动物。我们从两个种群中挑选了 300 头哈萨克肉毛羊进行 PCR-RFLP(聚合酶链式反应-限制性片段长度多态性)分析,随后对其中 15 头进行了 GDF9 和 BMP15 基因外显子区测序。对羊群进行了 GDF9 基因 G1 和 G8 突变以及 BMP15 基因 B2 和 B4 突变的检测。PCR-RFLP分析显示,300只哈萨克肉毛种绵羊中有59只(19.7%)是GDF9基因G1突变(基因型AG)的杂合子携带者,测序分析也证实了这些结果。系统发育比较分析表明,哈萨克肉毛羊野生型与 G1 基因突变携带者明显分离。据报道,这种突变与其他绵羊品种的产仔数有关。因此,应在哈萨克肉毛羊中研究类似的关系。然而,在研究的动物种群中并未发现 G8、B2 和 B4 突变,这表明这些突变并非哈萨克肉毛羊品种的特征。
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引用次数: 0
Polymorphism and expression of GLUD1 in relation to reproductive performance in Jining Grey goats. GLUD1的多态性和表达与济宁灰山羊繁殖性能的关系
3区 农林科学 Q2 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2023-12-07 eCollection Date: 2023-01-01 DOI: 10.5194/aab-66-411-2023
Wei Wang, Yongjuan Wang, Yufang Liu, Guiling Cao, Ran Di, Jinyu Wang, Mingxing Chu

Understanding the molecular mechanism of mammalian reproduction (puberty and prolificacy) will play a part in improving animal reproductive performance. GLUD1 (glutamate dehydrogenase 1) is important for mammalian reproduction, as shown in previous studies; however, its roles in puberty and prolificacy have rarely been reported. In this study, we designed seven pairs of primers (P1 to P7) for cloning and sequencing genomic DNA of Jining Grey goats and Liaoning Cashmere goats. Primer 8 (P8) was designed to detect single nucleotide polymorphism (SNP) of the GLUD1 in both sexually precocious and high-fecundity breeds (Jining Grey, Nanjiang Brown and Matou goats) and sexually late-maturing and low-fecundity breeds (Liaoning Cashmere, Inner Mongolia Cashmere and Taihang goats) by PCR-RFLP (restriction fragment length polymorphism). The real-time quantitative polymerase chain reaction (RT-qPCR) technique was used to detect the expression of GLUD1 in a variety of tissues. The results showed that the A197C mutation was only found in the amplification product of P6. For this SNP locus, only two genotypes (AA and AC) were detected in Nanjiang Brown goats, while three genotypes (AA, AC and CC) were detected in the other five breeds. In Jining Grey goats, the frequency of genotypes AA, AC and CC was 0.69, 0.26 and 0.05, respectively. In Jining Grey goats, AA genotype had 0.54 (P<0.05) and 0.3 (P<0.05) more kids than the CC and AC genotype, respectively, and no significant difference (P>0.05) was found in kidding number between the AC and CC genotype. GLUD1 was expressed in five tissues of different developmental stages. The expression level of GLUD1 in the hypothalamus was higher than that in the other four tissues except during puberty of Liaoning Cashmere goats. In puberty in goats, GLUD1 expression was significantly higher in ovaries than that in the juvenile period (P<0.01). RT-qPCR results showed that the expression of GLUD1 in ovaries may relate to the puberty of goats. The present study preliminarily indicated that there might be an association between the 197 locus of GLUD1 and sexual precocity in goats, and allele A of GLUD1 was a potential DNA marker for improving kidding number in Jining Grey goats.

了解哺乳动物繁殖(青春期和多产)的分子机制将有助于提高动物的繁殖性能。GLUD1(谷氨酸脱氢酶 1)对哺乳动物的繁殖非常重要,这一点已在以往的研究中得到证实,但其在青春期和多产期的作用却鲜有报道。本研究设计了七对引物(P1 至 P7),用于克隆和测序济宁灰山羊和辽宁羊绒山羊的基因组 DNA。引物 8(P8)用于通过 PCR-RFLP(限制性片段长度多态性)检测性早熟高繁殖力品种(集宁灰山羊、南江褐山羊和马头山羊)和性晚熟低繁殖力品种(辽宁羊绒山羊、内蒙古羊绒山羊和太行山羊)中 GLUD1 的单核苷酸多态性(SNP)。采用实时定量聚合酶链反应(RT-qPCR)技术检测了 GLUD1 在多种组织中的表达。结果显示,A197C 突变只出现在 P6 的扩增产物中。该 SNP 位点在南江褐山羊中只检测到两个基因型(AA 和 AC),而在其他五个品种中检测到三个基因型(AA、AC 和 CC)。在济宁灰山羊中,基因型 AA、AC 和 CC 的频率分别为 0.69、0.26 和 0.05。在济宁灰山羊中,AA基因型比CC和AC基因型的产仔数分别多0.54(P0.05)和0.3(P0.05)只,AC和CC基因型的产仔数差异不显著(P>0.05)。GLUD1在不同发育阶段的五个组织中均有表达。除辽宁羊绒山羊青春期外,GLUD1在下丘脑的表达水平高于其他四个组织。在山羊的青春期,GLUD1在卵巢中的表达明显高于幼年期(P0.01)。RT-qPCR结果表明,GLUD1在卵巢中的表达可能与山羊的青春期有关。本研究初步表明,GLUD1的197位点与山羊性早熟可能存在关联,GLUD1等位基因A是提高济宁灰山羊开胎数的潜在DNA标记。
{"title":"Polymorphism and expression of <i>GLUD1</i> in relation to reproductive performance in Jining Grey goats.","authors":"Wei Wang, Yongjuan Wang, Yufang Liu, Guiling Cao, Ran Di, Jinyu Wang, Mingxing Chu","doi":"10.5194/aab-66-411-2023","DOIUrl":"10.5194/aab-66-411-2023","url":null,"abstract":"<p><p>Understanding the molecular mechanism of mammalian reproduction (puberty and prolificacy) will play a part in improving animal reproductive performance. <i>GLUD1</i> (glutamate dehydrogenase 1) is important for mammalian reproduction, as shown in previous studies; however, its roles in puberty and prolificacy have rarely been reported. In this study, we designed seven pairs of primers (P1 to P7) for cloning and sequencing genomic DNA of Jining Grey goats and Liaoning Cashmere goats. Primer 8 (P8) was designed to detect single nucleotide polymorphism (SNP) of the <i>GLUD1</i> in both sexually precocious and high-fecundity breeds (Jining Grey, Nanjiang Brown and Matou goats) and sexually late-maturing and low-fecundity breeds (Liaoning Cashmere, Inner Mongolia Cashmere and Taihang goats) by PCR-RFLP (restriction fragment length polymorphism). The real-time quantitative polymerase chain reaction (RT-qPCR) technique was used to detect the expression of <i>GLUD1</i> in a variety of tissues. The results showed that the A197C mutation was only found in the amplification product of P6. For this SNP locus, only two genotypes (AA and AC) were detected in Nanjiang Brown goats, while three genotypes (AA, AC and CC) were detected in the other five breeds. In Jining Grey goats, the frequency of genotypes AA, AC and CC was 0.69, 0.26 and 0.05, respectively. In Jining Grey goats, AA genotype had 0.54 (<math><mrow><mi>P</mi><mi><</mi><mn>0.05</mn></mrow></math>) and 0.3 (<math><mrow><mi>P</mi><mi><</mi><mn>0.05</mn></mrow></math>) more kids than the CC and AC genotype, respectively, and no significant difference (<math><mrow><mi>P</mi><mi>></mi><mn>0.05</mn></mrow></math>) was found in kidding number between the AC and CC genotype. <i>GLUD1</i> was expressed in five tissues of different developmental stages. The expression level of <i>GLUD1</i> in the hypothalamus was higher than that in the other four tissues except during puberty of Liaoning Cashmere goats. In puberty in goats, <i>GLUD1</i> expression was significantly higher in ovaries than that in the juvenile period (<math><mrow><mi>P</mi><mi><</mi><mn>0.01</mn></mrow></math>). RT-qPCR results showed that the expression of <i>GLUD1</i> in ovaries may relate to the puberty of goats. The present study preliminarily indicated that there might be an association between the 197 locus of <i>GLUD1</i> and sexual precocity in goats, and allele A of <i>GLUD1</i> was a potential DNA marker for improving kidding number in Jining Grey goats.</p>","PeriodicalId":55481,"journal":{"name":"Archiv Fur Tierzucht-Archives of Animal Breeding","volume":"66 4","pages":"411-419"},"PeriodicalIF":0.0,"publicationDate":"2023-12-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10776882/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139418672","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The effect of two mineral-vitamin premixes on the blood biochemical parameters, milk yield and composition of Holstein-Friesian cows in Kazakhstan. 两种矿物质-维生素预混料对哈萨克斯坦荷斯坦-弗里斯兰奶牛血液生化指标、产奶量和组成的影响。
3区 农林科学 Q2 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2023-12-04 eCollection Date: 2023-01-01 DOI: 10.5194/aab-66-391-2023
Gulzhan K Mussayeva, Gulshat I Shaykamal, Indira N Aitzhanova, Aigerim Kazhiyakbarova, Jan Miciński, Alicja Sobczak, Nurgul A Meldebekova, Gulnaz Ilgekbayeva, Nurkuisa M Rametov

The aim of this study was to determine the effect of two mineral-vitamin premixes on the health status (blood biochemical parameters), milk yield and composition of Holstein-Friesian (HF) cows in Kazakhstan. The study was performed on Holstein-Friesian cows kept on the Bek Plus dairy farm in the village of Korzhynkol, Fyodorovsky District, Kostanay Region. Forty primiparous cows, selected from the herd, were divided by the analogue method into two groups: a control group (C) and an experimental group (E) of 20 animals each. The diets fed to group E cows were supplemented with LI-R 18 PRO and PANTO® Mineral R-77 Premium mineral-vitamin premixes. The premixes positively affected cow productivity and blood biochemical parameters, whose values were higher in group E than in group C. Higher levels of glucose, albumins and globulins exerted a beneficial influence on the health status of cows. No cases of lameness or metabolic diseases were recorded in group E. The yields of milk, protein and fat were higher in group E than in group C. Dietary supplementation with two premixes had no significant effect on the chemical composition of milk, including the values of the following parameters: somatic cell count (SCC), dry matter (DM), lactose (Lse), casein (Cin), acidity (Aty), lactic acid (LA), density (Dty), free fatty acids (FFAs), glucose (Gse) and urea (Uea).

本研究旨在确定两种矿物质-维生素预混料对哈萨克斯坦荷斯坦-弗里斯兰(HF)奶牛健康状况(血液生化指标)、产奶量和组成的影响。研究对象是科斯塔奈州费奥多罗夫斯基区科尔日科尔村 Bek Plus 奶牛场饲养的荷斯坦-弗里斯兰奶牛。从牛群中挑选出的 40 头初产奶牛按模拟法分为两组:对照组(C)和实验组(E),每组 20 头。E 组奶牛的日粮中添加了 LI-R 18 PRO 和 PANTO® Mineral R-77 Premium 矿物质-维生素预混料。预混料对奶牛的生产性能和血液生化指标有积极影响,E 组的数值高于 C 组。E 组的牛奶、蛋白质和脂肪产量均高于 C 组。日粮中添加两种预混料对牛奶的化学成分没有明显影响,包括以下参数值:体细胞数(SCC)、干物质(DM)、乳糖(Lse)、酪蛋白(Cin)、酸度(Aty)、乳酸(LA)、密度(Dty)、游离脂肪酸(FFAs)、葡萄糖(Gse)和尿素(Uea)。
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引用次数: 0
Milk-y Way: the impact of single-nucleotide polymorphisms on milk production traits in Kilis dairy goats. Milk-y Way:单核苷酸多态性对基利斯奶山羊产奶性状的影响。
3区 农林科学 Q2 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2023-11-24 eCollection Date: 2023-01-01 DOI: 10.5194/aab-66-369-2023
Zühal Gündüz, Osman Biçer

This study aimed to investigate the impact of single-nucleotide polymorphisms (SNPs) on milk production traits in Kilis dairy goats by analyzing the genotypes of POU1F1, PRLR, β -Lg, GH1, and GH2 genes and their association with lactation milk yield (LMY), lactation length (LL) and average daily milk yield (ADMY). Blood samples were collected from 227 goats, and genotyping was performed using polymerase chain reaction restriction fragment length polymorphism (PCR-RFLP). The results revealed that the frequencies of the genotypes varied among the genes. The polymorphisms were found to be significantly linked with milk production traits. These findings suggest that SNPs of POU1F1/AluI, PRLR/RsaI and β -Lg/SacII are significantly associated with LMY and that the POU1F1-TC genotype, PRLR-TT genotype and β -Lg-AB genotype are associated with higher LMY and ADMY. Additionally, the POU1F1-TC genotype was found to have a longer LL. However, no significant association was found between the GH1 and GH2 genotypes and LMY, LL and ADMY. Overall, this study provides valuable insights into the genetic factors influencing milk production traits in Kilis dairy goats, which can be utilized for the selection of high-yielding animals in breeding programs.

本研究旨在通过分析 POU1F1、PRLR、β -Lg、GH1 和 GH2 基因的基因型及其与泌乳期产奶量(LMY)、泌乳期长度(LL)和平均日产奶量(ADMY)的关系,研究单核苷酸多态性(SNPs)对基利斯奶山羊产奶性状的影响。研究人员采集了 227 只山羊的血样,并利用聚合酶链式反应限制性片段长度多态性(PCR-RFLP)进行了基因分型。结果显示,不同基因的基因型频率各不相同。发现这些多态性与产奶性状有显著联系。这些结果表明,POU1F1/AluI、PRLR/RsaI 和 β -Lg/SacII 的 SNP 与 LMY 显著相关,POU1F1-TC 基因型、PRLR-TT 基因型和 β -Lg-AB 基因型与较高的 LMY 和 ADMY 相关。此外,还发现 POU1F1-TC 基因型的 LL 更长。然而,在 GH1 和 GH2 基因型与 LMY、LL 和 ADMY 之间没有发现明显的关联。总之,本研究对影响基利斯奶山羊产奶性状的遗传因素提供了宝贵的见解,可用于育种计划中高产动物的选育。
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引用次数: 0
Genome-wide single nucleotide polymorphism (SNP) data reveal potential candidate genes for litter traits in a Yorkshire pig population. 全基因组单核苷酸多态性(SNP)数据揭示了约克郡猪种群产仔性状的潜在候选基因。
3区 农林科学 Q2 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2023-11-23 eCollection Date: 2023-01-01 DOI: 10.5194/aab-66-357-2023
Yu Zhang, Jinhua Lai, Xiaoyi Wang, Mingli Li, Yanlin Zhang, Chunlv Ji, Qiang Chen, Shaoxiong Lu

The litter trait is one of the most important economic traits, and increasing litter size is of great economic value in the pig industry. However, the molecular mechanisms underlying pig litter traits remain elusive. To identify molecular markers and candidate genes for pig litter traits, a genome-wide association study (GWAS) and selection signature analysis were conducted in a Yorkshire pig population. A total of 518 producing sows were genotyped with Illumina Porcine SNP 50 BeadChip, and 1969 farrowing records for the total number born (TNB), the number born alive (NBA), piglets born dead (PBD), and litter weight born alive (LWB) were collected. Then, a GWAS was performed for the four litter traits using a repeatability model. Based on the estimated breeding values (EBVs) of TNB, 15 high- and 15 low-prolificacy individuals were selected from the 518 sows to implement selection signature analysis. Subsequently, the selection signatures affecting the litter traits of sows were detected by using two methods including the fixation index (FST) and θπ. Combining the results of the GWAS and selection signature analysis, 20 promising candidate genes (NKAIN2, IGF1R, KISS1R, TYRO3, SPINT1, ADGRF5, APC2, PTBP1, CLCN3, CBR4, HPF1, FAM174A, SCP2, CLIC1, ZFYVE9, SPATA33, KIF5C, EPC2, GABRA2, and GABRA4) were identified. These findings provide novel insights into the genetic basis of pig litter traits and will be helpful for improving the reproductive performances of sows in pig breeding.

产仔数性状是最重要的经济性状之一,提高产仔数在养猪业中具有重要的经济价值。然而,猪产仔数性状的分子机制仍然难以捉摸。为了确定猪产仔数性状的分子标记和候选基因,我们在约克郡猪群中进行了全基因组关联研究(GWAS)和选择特征分析。利用 Illumina Porcine SNP 50 BeadChip 对 518 头生产母猪进行了基因分型,并收集了 1969 份分娩记录,包括出生总数(TNB)、出生成活数(NBA)、出生死亡仔猪数(PBD)和出生成活窝重(LWB)。然后,使用重复性模型对四种产仔性状进行 GWAS 分析。根据 TNB 的估计育种值(EBV),从 518 头母猪中选出 15 个高繁殖力个体和 15 个低繁殖力个体进行选择特征分析。随后,利用固定指数(FST)和θπ两种方法检测了影响母猪产仔性状的选择特征。结合 GWAS 和选择特征分析的结果,确定了 20 个有希望的候选基因(NKAIN2、IGF1R、KISS1R、TYRO3、SPINT1、ADGRF5、APC2、PTBP1、CLCN3、CBR4、HPF1、FAM174A、SCP2、CLIC1、ZFYVE9、SPATA33、KIF5C、EPC2、GABRA2 和 GABRA4)。这些发现为了解猪产仔数性状的遗传基础提供了新的视角,将有助于在猪育种中提高母猪的繁殖性能。
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引用次数: 0
Carcass composition and physicochemical and sensory attributes of breast and leg meat from native Mexican guajolote (Meleagris g. gallopavo) as influenced by sex. 受性别影响的墨西哥原生瓜州狼(Meleagris g. gallopavo)胸脯肉和腿肉的胴体成分及理化和感官属性。
3区 农林科学 Q2 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2023-11-20 eCollection Date: 2023-01-01 DOI: 10.5194/aab-66-341-2023
Rodrigo Portillo-Salgado, José Guadalupe Herrera-Haro, Jaime Bautista-Ortega, Jacinto Efrén Ramírez-Bribiesca, Carolina Flota-Bañuelos, Alfonso Juventino Chay-Canul, Francisco Antonio Cigarroa-Vázquez

The aim of the study was to compare carcass composition and physicochemical and sensory attributes of breast and leg meat from native Mexican guajolote (Meleagris g. gallopavo) as influenced by sex. For this, slaughter weight and carcass characteristics of male (n=8) and female (n=8) guajolotes raised traditionally under extensive systems with similar housing and feeding conditions were recorded. Also, physical characteristics, proximate composition, the fatty acid profile, and sensory attributes were determined in breast and leg meat using standard procedures. The results showed that males had higher (P<0.001) slaughter weight, hot and cold carcass weights, and dressing percentage, as well as carcass part weights, while females had higher (P<0.001) abdominal fat weights than males. The lightness (L*), yellowness (b*), and drip loss values of breast meat, as well as redness (a*) and water-holding capacity values of leg meat, were significantly (P<0.05) influenced by sex. Male breast meat had higher (P<0.05) moisture content, crude protein, erucic acid (C22:1n9),  MUFAs (total monounsaturated fatty acids),  UFAs (unsaturated fatty acids),  DFAs (desirable fatty acids),  UFA / SFA (total saturated fatty acid) ratio,  PUFA (total polyunsaturated fatty acid) / SFA ratio, and chewiness scores than females. Likewise, leg meat from males showed higher (P<0.05) ash content, myristic acid (C14:0), palmitic acid (C16:0), stearic acid (C18:0), oleic acid (C18:1n9c), palmitoleic acid (C16:1n7),  SFAs,  OFAs (odd fatty acids), thrombogenic index, and atherogenic index, whereas females had high fat content. In conclusion, it would be suggested that, from a nutritional point of view, the meat from male guajolotes was preferable to the meat from females.

这项研究的目的是比较墨西哥本地瓜州狼(Meleagris g. gallopavo)胸脯肉和腿肉的胴体成分、理化和感官属性受性别的影响。为此,记录了雄性(n=8)和雌性(n=8)瓜戈罗特牛的屠宰重量和胴体特征。此外,还采用标准程序测定了胸肉和腿肉的物理特征、近似成分、脂肪酸谱和感官属性。结果表明,雄性的屠宰重量、冷热胴体重量、拌料百分比以及胴体部位重量均高于雄性(P0.001),而雌性的腹部脂肪重量高于雄性(P0.001)。胸肉的亮度(L*)、黄度(b*)和滴水损失值以及腿肉的红度(a*)和持水量值受性别影响显著(P0.05)。雄性胸脯肉的水分含量、粗蛋白质、含水量和含水量均高于雌性(P0.05),水分含量、粗蛋白、芥酸(C22:1n9)、∑ MUFAs(单不饱和脂肪酸总量)、∑ UFAs(不饱和脂肪酸)、∑ DFAs(理想脂肪酸)、∑ UFA / ∑ SFA(饱和脂肪酸总量)比率、∑ PUFA(多不饱和脂肪酸总量) / ∑ SFA 比率和咀嚼度评分均高于雌性。同样,雄性腿肉的灰分含量、肉豆蔻酸(C14:0)、棕榈酸(C16:0)、硬脂酸(C18:0)、油酸(C18:1n9c)、棕榈油酸(C16:1n7)、∑ SFAs、∑ OFAs(奇异脂肪酸)、血栓形成指数和动脉粥样硬化指数均高于雌性(P0.05),而雌性的脂肪含量较高。总之,从营养角度来看,雄性瓜果肉比雌性瓜果肉更好。
{"title":"Carcass composition and physicochemical and sensory attributes of breast and leg meat from native Mexican guajolote (<i>Meleagris g. gallopavo</i>) as influenced by sex.","authors":"Rodrigo Portillo-Salgado, José Guadalupe Herrera-Haro, Jaime Bautista-Ortega, Jacinto Efrén Ramírez-Bribiesca, Carolina Flota-Bañuelos, Alfonso Juventino Chay-Canul, Francisco Antonio Cigarroa-Vázquez","doi":"10.5194/aab-66-341-2023","DOIUrl":"https://doi.org/10.5194/aab-66-341-2023","url":null,"abstract":"<p><p>The aim of the study was to compare carcass composition and physicochemical and sensory attributes of breast and leg meat from native Mexican guajolote (<i>Meleagris g. gallopavo</i>) as influenced by sex. For this, slaughter weight and carcass characteristics of male (<math><mrow><mi>n</mi><mo>=</mo><mn>8</mn></mrow></math>) and female (<math><mrow><mi>n</mi><mo>=</mo><mn>8</mn></mrow></math>) guajolotes raised traditionally under extensive systems with similar housing and feeding conditions were recorded. Also, physical characteristics, proximate composition, the fatty acid profile, and sensory attributes were determined in breast and leg meat using standard procedures. The results showed that males had higher (<math><mrow><mi>P</mi><mi><</mi><mn>0.001</mn></mrow></math>) slaughter weight, hot and cold carcass weights, and dressing percentage, as well as carcass part weights, while females had higher (<math><mrow><mi>P</mi><mi><</mi><mn>0.001</mn></mrow></math>) abdominal fat weights than males. The lightness (<math><mrow><msup><mi>L</mi><mo>*</mo></msup></mrow></math>), yellowness (<math><mrow><msup><mi>b</mi><mo>*</mo></msup></mrow></math>), and drip loss values of breast meat, as well as redness (<math><mrow><msup><mi>a</mi><mo>*</mo></msup></mrow></math>) and water-holding capacity values of leg meat, were significantly (<math><mrow><mi>P</mi><mi><</mi><mn>0.05</mn></mrow></math>) influenced by sex. Male breast meat had higher (<math><mrow><mi>P</mi><mi><</mi><mn>0.05</mn></mrow></math>) moisture content, crude protein, erucic acid (C22:1n9), <math><mo>∑</mo></math> MUFAs (total monounsaturated fatty acids), <math><mo>∑</mo></math> UFAs (unsaturated fatty acids), <math><mo>∑</mo></math> DFAs (desirable fatty acids), <math><mo>∑</mo></math> UFA <math><mo>/</mo></math> <math><mo>∑</mo></math> SFA (total saturated fatty acid) ratio, <math><mo>∑</mo></math> PUFA (total polyunsaturated fatty acid) <math><mo>/</mo></math> <math><mo>∑</mo></math> SFA ratio, and chewiness scores than females. Likewise, leg meat from males showed higher (<math><mrow><mi>P</mi><mi><</mi><mn>0.05</mn></mrow></math>) ash content, myristic acid (C14:0), palmitic acid (C16:0), stearic acid (C18:0), oleic acid (C18:1n9c), palmitoleic acid (C16:1n7), <math><mo>∑</mo></math> SFAs, <math><mo>∑</mo></math> OFAs (odd fatty acids), thrombogenic index, and atherogenic index, whereas females had high fat content. In conclusion, it would be suggested that, from a nutritional point of view, the meat from male guajolotes was preferable to the meat from females.</p>","PeriodicalId":55481,"journal":{"name":"Archiv Fur Tierzucht-Archives of Animal Breeding","volume":"66 4","pages":"341-355"},"PeriodicalIF":0.0,"publicationDate":"2023-11-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10726020/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138809298","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Determination of the effect of pre-mating weight and placental characteristics on birth weight in Karayaka sheep. 测定卡拉亚卡羊交配前体重和胎盘特征对出生体重的影响
3区 农林科学 Q2 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2023-11-17 eCollection Date: 2023-01-01 DOI: 10.5194/aab-66-335-2023
Samet Urun, Emre Şirin

The aim of this study was to determine the effect of the pre-mating weight and placental characteristics on birth weight. Data were collected from 62 Karayaka ewes and 70 Karayaka lambs. The placental characteristics considered were placental weight, placental area and the number of cotyledons. The Pearson correlation coefficient was used for statistical comparison and the determination of relationships between variables. In addition, correlation coefficients between live weights and placental characteristics were determined. The average birth weight (BW), pre-mating weight (PMW), placental weight (PW), placental area (PA) and cotyledon number (CN) values were 4.37 ± 0.70 kg, 50.22 ± 5.63 kg, 362.51 ± 118.42 g, 994.18 ± 312.76 cm2 and 56.93 ± 8.06, respectively. BW had positive correlations with PMW (0.147), birth type (BT) (0.643), PW (0.604), PA (0.323) and CN (0.161) (P< 0.05). BW had negative correlations with maternal age (MA) (-0.119) (P< 0.05). PMW had positive correlations with maternal age (MA) (0.237) (P< 0.05). PMW had negative correlations with S (sex) (-0.003), PW (-0.049), PA (-0.067) and CN (-0.080) (P> 0.05).

本研究旨在确定交配前体重和胎盘特征对出生体重的影响。研究收集了 62 只卡拉亚卡母羊和 70 只卡拉亚卡羔羊的数据。胎盘特征包括胎盘重量、胎盘面积和子叶数量。皮尔逊相关系数用于统计比较和确定变量之间的关系。此外,还测定了活重与胎盘特征之间的相关系数。平均出生体重(BW)、交配前体重(PMW)、胎盘重量(PW)、胎盘面积(PA)和子叶数(CN)分别为 4.37 ± 0.70 kg、50.22 ± 5.63 kg、362.51 ± 118.42 g、994.18 ± 312.76 cm2 和 56.93 ± 8.06。体重与PMW(0.147)、出生类型(BT)(0.643)、PW(0.604)、PA(0.323)和CN(0.161)呈正相关(P 0.05)。体重与母亲年龄(MA)呈负相关(-0.119)(P 0.05)。PMW 与母体年龄(MA)呈正相关(0.237)(P 0.05)。PMW 与 S(性别)(-0.003)、PW(-0.049)、PA(-0.067)和 CN(-0.080)呈负相关(P > 0.05)。
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引用次数: 0
Inheritance of body size and ultrasound carcass traits in yearling Anatolian buffalo calves. 一岁安纳托利亚水牛犊牛体型和超声波胴体特征的遗传。
3区 农林科学 Q2 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2023-11-16 eCollection Date: 2023-01-01 DOI: 10.5194/aab-66-325-2023
Samet Çinkaya, Mustafa Tekerli

The body size and ultrasound carcass traits are related to the growth and muscling of animals. These characters promise future improvement through genetic selection in animal breeding. In breeding programs, knowing the (co)variance components serves to reveal the performance differences among animals and detection of suitable traits for selection. The research was carried out with 313 Anatolian buffalo calves born in 2019 at 36 farm operations. The least-square means for body weight (BW), wither height (WH), rump height (RH), body length (BL), chest width (CW), hip width (HW), chest circumference (CC), cannon-bone circumference (CBC), longissimus muscle area (LMA), longissimus muscle depth (LMD), and subcutaneous fat thickness (SFT) in yearling calves were 175.41 ± 2.06 kg, 108.35 ± 0.34, 111.85 ± 0.37, 103.74 ± 0.41, 33.93 ± 0.23, 30.56 ±  0.23, 135.18 ± 0.60, 15.69 ± 0.08 cm, 19.36 ± 0.45 cm2, 3.086 ± 0.028, and 0.655 ± 0.006 cm, respectively. The direct heritabilities for BW, WH, RH, BL, CW, HW, CC, CBC, LMA, LMD, and SFT were 0.334 ± 0.032, 0.483 ± 0.044, 0.473 ± 0.043, 0.441 ± 0.041, 0.364 ± 0.034, 0.432 ± 0.040, 0.435 ± 0.040, 0.226 ± 0.021, 0.0001 ± 0.000, 0.300 ± 0.026, and 0.539 ± 0.046, respectively. The genetic and phenotypic correlations predicted in this study ranged from 0.02 to 0.90. All the genetic and phenotypic correlations among body size and ultrasound carcass traits were significant (P<0.01), except for the genetic correlation between CW and HW. Some polymorphisms in PLAG1, NCAPG, LCORL, and HMGA2 genes were analyzed. Two single-nucleotide polymorphisms (SNPs) for PLAG1 and NCAPG genes were found to be monomorphic in this buffalo population. Meanwhile, the effects of two SNPs in the LCORL and HMGA2 genes were not significant but showed some tendencies in the aspects of least-square means. The results of the study indicated that the Anatolian buffaloes have the potential to improve in growth and muscling characteristics.

体型和超声波胴体特征与动物的生长和肌肉有关。这些性状有望在未来的动物育种中通过遗传选择得到改善。在育种计划中,了解(共)方差成分有助于揭示动物之间的性能差异,并发现适合选择的性状。研究对象是 36 个农场 2019 年出生的 313 头安纳托利亚水牛犊牛。一岁犊牛体重(BW)、枯高(WH)、臀高(RH)、体长(BL)、胸宽(CW)、臀宽(HW)、胸围(CC)、炮骨围(CBC)、长肌面积(LMA)、长肌深度(LMD)和皮下脂肪厚度(SFT)的最小平方均值分别为 175.41±2.06千克、108.35±0.34、111.85±0.37、103.74±0.41、33.93±0.23、30.56±0.23、135.18±0.60、15.69±0.08厘米、19.36±0.45平方厘米、3.086±0.028和0.655±0.006厘米。BW、WH、RH、BL、CW、HW、CC、CBC、LMA、LMD 和 SFT 的直接遗传率分别为 0.334 ± 0.032、0.483 ± 0.044、0.473 ± 0.043、0.441 ± 0.041、0.364±0.034、0.432±0.040、0.435±0.040、0.226±0.021、0.0001±0.000、0.300±0.026 和 0.539±0.046。本研究预测的遗传和表型相关性在 0.02 至 0.90 之间。除了 CW 和 HW 之间的遗传相关性外,体型和超声胴体性状之间的遗传和表型相关性均显著(P0.01)。对 PLAG1、NCAPG、LCORL 和 HMGA2 基因的一些多态性进行了分析。结果发现,在该水牛群体中,PLAG1 和 NCAPG 基因的两个单核苷酸多态性(SNPs)是单态的。同时,LCORL 和 HMGA2 基因的两个 SNPs 的影响不显著,但在最小平方均值方面表现出一定的倾向性。研究结果表明,安纳托利亚水牛具有改善生长和肌肉特性的潜力。
{"title":"Inheritance of body size and ultrasound carcass traits in yearling Anatolian buffalo calves.","authors":"Samet Çinkaya, Mustafa Tekerli","doi":"10.5194/aab-66-325-2023","DOIUrl":"https://doi.org/10.5194/aab-66-325-2023","url":null,"abstract":"<p><p>The body size and ultrasound carcass traits are related to the growth and muscling of animals. These characters promise future improvement through genetic selection in animal breeding. In breeding programs, knowing the (co)variance components serves to reveal the performance differences among animals and detection of suitable traits for selection. The research was carried out with 313 Anatolian buffalo calves born in 2019 at 36 farm operations. The least-square means for body weight (BW), wither height (WH), rump height (RH), body length (BL), chest width (CW), hip width (HW), chest circumference (CC), cannon-bone circumference (CBC), longissimus muscle area (LMA), longissimus muscle depth (LMD), and subcutaneous fat thickness (SFT) in yearling calves were 175.41 <math><mo>±</mo></math> 2.06 kg, 108.35 <math><mo>±</mo></math> 0.34, 111.85 <math><mo>±</mo></math> 0.37, 103.74 <math><mo>±</mo></math> 0.41, 33.93 <math><mo>±</mo></math> 0.23, 30.56 <math><mo>±</mo></math>  0.23, 135.18 <math><mo>±</mo></math> 0.60, 15.69 <math><mo>±</mo></math> 0.08 cm, 19.36 <math><mo>±</mo></math> 0.45 cm<math><msup><mi></mi><mn>2</mn></msup></math>, 3.086 <math><mo>±</mo></math> 0.028, and 0.655 <math><mo>±</mo></math> 0.006 cm, respectively. The direct heritabilities for BW, WH, RH, BL, CW, HW, CC, CBC, LMA, LMD, and SFT were 0.334 <math><mo>±</mo></math> 0.032, 0.483 <math><mo>±</mo></math> 0.044, 0.473 <math><mo>±</mo></math> 0.043, 0.441 <math><mo>±</mo></math> 0.041, 0.364 <math><mo>±</mo></math> 0.034, 0.432 <math><mo>±</mo></math> 0.040, 0.435 <math><mo>±</mo></math> 0.040, 0.226 <math><mo>±</mo></math> 0.021, 0.0001 <math><mo>±</mo></math> 0.000, 0.300 <math><mo>±</mo></math> 0.026, and 0.539 <math><mo>±</mo></math> 0.046, respectively. The genetic and phenotypic correlations predicted in this study ranged from 0.02 to 0.90. All the genetic and phenotypic correlations among body size and ultrasound carcass traits were significant (<math><mrow><mi>P</mi><mi><</mi><mn>0.01</mn></mrow></math>), except for the genetic correlation between CW and HW. Some polymorphisms in <i>PLAG1</i>, <i>NCAPG</i>, <i>LCORL</i>, and <i>HMGA2</i> genes were analyzed. Two single-nucleotide polymorphisms (SNPs) for <i>PLAG1</i> and <i>NCAPG</i> genes were found to be monomorphic in this buffalo population. Meanwhile, the effects of two SNPs in the <i>LCORL</i> and <i>HMGA2</i> genes were not significant but showed some tendencies in the aspects of least-square means. The results of the study indicated that the Anatolian buffaloes have the potential to improve in growth and muscling characteristics.</p>","PeriodicalId":55481,"journal":{"name":"Archiv Fur Tierzucht-Archives of Animal Breeding","volume":"66 4","pages":"325-333"},"PeriodicalIF":0.0,"publicationDate":"2023-11-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10726022/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138809307","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Archiv Fur Tierzucht-Archives of Animal Breeding
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