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Origin of insect wings, metamorphosis, pupae and the maj or insect orders. 昆虫翅膀的起源,变态,蛹和主要昆虫目。
IF 1.5 4区 生物学 Q4 BIOLOGY Pub Date : 2023-07-01 DOI: 10.19272/202311402006
Robert Bligh Toms

Although most discussions on the origin and evolution of insect wings and metamorphosis have assumed that the ancestors of winged insects were terrestrial, it now seems possible that they were actually aquatic. Changing the basic assumptions affects our interpretations of the origin of metamorphosis and our understanding of insect diversity. It is argued that the ancestors of winged insects were similar to primitive mayflies, developing from aquatic larvae into terrestrial adults, and that metamorphosis originated as an inevitable consequence of an amphibiotic life cycle. It is suggested that the first pupae resembled those of Megaloptera.

虽然大多数关于昆虫翅膀的起源和进化以及变形的讨论都假设有翼昆虫的祖先是陆生的,但现在看来,它们实际上可能是水生的。改变基本假设会影响我们对变态起源的解释和我们对昆虫多样性的理解。有人认为,有翅昆虫的祖先与原始蜉蝣相似,从水生幼虫发育为陆生成虫,变态是两栖生物生命周期的必然结果。初步推测其蛹与大翅目的蛹相似。
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引用次数: 0
Ontogeny and phylogeny of mating behaviour: social heteroch rony in primates. 交配行为的个体发育和系统发育:灵长类动物的社会异位。
IF 1.5 4区 生物学 Q4 BIOLOGY Pub Date : 2023-07-01 DOI: 10.19272/202311402002
Fabien Génin, Hajarimanitra Rambeloarivony, Daniele Silvestro, Judith C Masters

Based on the Recognition Concept of species, the specific-mate contact model posits that mating systems develop as combinations of two fundamental courtship strategies that we interpret here in terms of behavioural heterochrony: territorial mate-attraction evolved as an effect of peramorphosis whereas group-living mate-seeking evolved as an effect of paedomorphosis. We tested this hypothesis on primates in a phylogenetic and paleo-climatic context. Our results suggest that primate promiscuity (both males and females are mate-seekers) evolved with group-living from ancestral pair-living monogamy (both males and females are mate-attractors) in the Palaeogene, as the result of a slowdown in growth (neoteny) caused by increased environmental predictability. A secondary return to territorial monogamy probably evolved as the result of accelerated growth driven by seasonality (acceleration). Polygamy evolved in the Neogene during periods of forest fragmentation and environmental unpredictability. Small monogamous ancestors evolved seasonal polyandry (female attraction) as an effect of truncated development (progenesis). Large promiscuous, neotenic ancestors evolved non-seasonal polygyny (male attraction) as an effect of prolonged development (hypermorphosis) in males. We conclude that social heterochrony offers alternative explanations for the coevolution of life history and mating be-haviour; and we discuss the implications of our model for human social evolution.

基于物种的识别概念,特定配偶接触模型假设交配系统是两种基本求爱策略的结合,我们在这里从行为异时性的角度来解释这两种策略:领地性配偶吸引是由大形态进化而来的,而群体生活的配偶寻求是由幼形态进化而来的。我们在灵长类动物的系统发育和古气候背景下测试了这一假设。我们的研究结果表明,灵长类动物的滥交行为(雄性和雌性都是求偶者)是在古近纪从祖先的一对生活的一夫一妻制(雄性和雌性都是求偶者)进化而来的,这是由于环境可预测性增加导致的生长放缓(生育期)的结果。第二次回归到领地一夫一妻制可能是由季节性驱动的加速生长的结果(加速)。一夫多妻制是在新近纪森林破碎化和环境不可预测时期演变而来的。小型的一夫一妻制祖先进化出季节性的多夫制(雌性吸引力),这是截断发育(后代)的结果。大型滥交的新生代祖先进化出了非季节性的一夫多妻制(雄性吸引力),这是雄性长时间发育(多形态)的结果。我们得出结论,社会异时性为生命史和交配行为的共同进化提供了另一种解释;我们还讨论了我们的模型对人类社会进化的影响。
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引用次数: 0
Judith masters, fabien génin. Obituary for two unique and talented evolutionary biologists. 朱迪思大师,法比安·盖宁。悼念两位独特而有才华的进化生物学家。
IF 1.5 4区 生物学 Q4 BIOLOGY Pub Date : 2023-07-01 DOI: 10.19272/202311402003
David Lambert
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引用次数: 0
A third way to the selected effect/causal role distinction in the great encode debate. 第三种方式选择的影响/因果作用的区别在大编码辩论。
IF 1.5 4区 生物学 Q4 BIOLOGY Pub Date : 2023-07-01 DOI: 10.19272/202311402004
Ehud Lamm, Sophie Juliane Veigl

Since the ENCODE project published its final results in a series of articles in 2012, there is no consensus on what its implications are. ENCODE's central and most controversial claim was that there is essentially no junk DNA: most sections of the human genome believed to be «junk» are functional. This claim was met with many reservations. If researchers disagree about whether there is junk DNA, they have first to agree on a concept of function and how function, given a particular definition, can be discovered. The ENCODE debate centered on a notion of function that assumes a strong dichotomy between evolutionary and non-evolutionary function and causes, prevalent in the Modern Evolutionary Synthesis. In contrast to how the debate is typically portrayed, both sides share a commitment to this distinction. This distinction is, however, much debated in alternative approaches to evolutionary theory, such as the EES. We show that because the ENCODE debate is grounded in a particular notion of function, it is unclear how it connects to broader debates about what is the correct evolutionary framework. Furthermore, we show how arguments brought forward in the controversy, particularly arguments from mathematical population genetics, are deeply embedded in their particular disciplinary contexts, and reflect substantive assumptions about the evolution of genomes. With this article, we aim to provide an anatomy of the ENCODE debate that offers a new perspective on the notions of function both sides employed, as well as to situate the ENCODE debate within wider debates regarding the forces operating in evolution.

自从ENCODE项目于2012年在一系列文章中发表了最终结果以来,人们对其含义没有达成共识。ENCODE的核心和最具争议的主张是,本质上没有垃圾DNA:大多数被认为是“垃圾”的人类基因组片段都是功能性的。这种说法遭到许多人的保留。如果研究人员在是否存在垃圾DNA的问题上存在分歧,他们必须首先就功能的概念以及如何在特定的定义下发现功能达成一致。ENCODE的争论集中在一个功能概念上,该概念假定在进化和非进化的功能和原因之间存在强烈的二分法,这在现代进化综合理论中很普遍。与辩论的典型描述相反,双方都致力于这一区别。然而,这种区别在进化理论的替代方法(如EES)中备受争议。我们表明,由于ENCODE争论是基于一个特定的功能概念,因此尚不清楚它如何与更广泛的关于什么是正确的进化框架的争论联系起来。此外,我们还展示了争论中提出的论点,特别是来自数学群体遗传学的论点,如何深深植根于其特定的学科背景中,并反映了关于基因组进化的实质性假设。在这篇文章中,我们的目标是对ENCODE辩论进行剖析,为双方所采用的功能概念提供一个新的视角,并将ENCODE辩论置于关于进化中起作用的力量的更广泛的辩论中。
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引用次数: 0
Trust and Credit in Organizations and Institutions 组织和机构中的信任和信用
IF 1.5 4区 生物学 Q4 BIOLOGY Pub Date : 2022-01-01 DOI: 10.1007/978-981-19-4979-1
M. Nakamaru
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引用次数: 0
A Primer on Population Dynamics Modeling 人口动力学建模入门
IF 1.5 4区 生物学 Q4 BIOLOGY Pub Date : 2022-01-01 DOI: 10.1007/978-981-19-6016-1
H. Seno
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引用次数: 3
Getting Started in Mathematical Life Sciences 数学生命科学入门
IF 1.5 4区 生物学 Q4 BIOLOGY Pub Date : 2022-01-01 DOI: 10.1007/978-981-19-8257-6
Makoto Sato
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引用次数: 0
Nonparametric clustering for longitudinal functional data with the application to H-NMR spectra of kidney transplant patients. Longitudinal functional data clustering. 纵向功能数据的非参数聚类及其在肾移植患者H-NMR谱中的应用。纵向功能数据聚类。
IF 1.5 4区 生物学 Q4 BIOLOGY Pub Date : 2021-01-01 DOI: 10.19272/202111401003
Minzhen Xie, Haiyan Liu, Jeanine Houwing-Duistermaat
Longitudinal functional data are increasingly common in the health domain. The motivated dataset for this paper comprises H-NMR spectra of kidney transplant patients [8]. Our aim is to cluster patients into different clinical outcome subgoups to reveal the success of the transplantation. The NMR spectra of each patient at each time point are functional data and the data are longitudinally collected at up to nine different time points. Existing methods are available for functional data collected at one time point, but not for longitudinal functional data collected at a grid of time points subject to missingness. We therefore first apply a method to extract the same number of functional feactures for each subject. Next we propose a novel nonparametric clustering method for mulitivariate functional data. We applied our proposed clustering method to the kidney transplant dataset both to a subset of the raw data with only two time points and the extacted functional features. It appeared that the proposed method achieves better clustering performance on the extracted functional features than on the subset of raw data. A data simulation study was performed to further evaluate the method. The design mimiced the kidney transplant dataset but with a larger sample size. Scenarios which have different levels of noise were considered. The simulation study showed the accuarcy of our proposed method.
纵向功能数据在健康领域越来越常见。本文的动机数据集包括肾移植患者的H-NMR光谱[8]。我们的目的是将患者分为不同的临床结果亚组,以揭示移植的成功。每个患者在每个时间点的NMR光谱都是功能数据,并且在多达九个不同的时间点纵向收集数据。现有方法可用于在一个时间点收集的功能数据,但不适用于在可能丢失的时间点网格收集的纵向功能数据。因此,我们首先应用一种方法为每个受试者提取相同数量的功能特征。接下来,我们提出了一种新的多变量函数数据的非参数聚类方法。我们将我们提出的聚类方法应用于肾移植数据集,既应用于只有两个时间点的原始数据子集,也应用于提取的功能特征。与原始数据子集相比,所提出的方法在提取的功能特征上实现了更好的聚类性能。进行了数据模拟研究以进一步评估该方法。该设计模仿了肾移植数据集,但样本量更大。考虑了具有不同噪声水平的场景。仿真研究表明了该方法的准确性。
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引用次数: 2
Use of shared gamma frailty model in analysis of survival data in twins. 共享伽玛脆弱性模型在双胞胎生存数据分析中的应用。
IF 1.5 4区 生物学 Q4 BIOLOGY Pub Date : 2021-01-01 DOI: 10.19272/202111402005
Annah Mwikali Muli, A. Gusnanto, Jeanine Houwing-Duistermaat
In survival analysis, the effect of a covariate on the outcome is reported in a hazard rate. However, hazards rates are hard to interpret. Here we consider differences in survival probabilities instead. Using data on twins is interesting due to the fact that many observed and unobserved factors are controlled or matched. To model the correlation between twins, some authors have proposed survival models with frailties or random effects. However, there is a potential danger of bias in the estimation if the frailty distribution is misspecified. Frailties are often assumed to follow a gamma distribution. To safeguard us from the impact of the misspecification of this distribution, we consider a flexible non-parametric baseline hazard in addition to a parametric one. We will apply this methodology to the TwinsUK cohort to predict the probability of experiencing a fracture in the next five or ten years, given their bone mineral densities (BMD) and their frailty index. The models with parametric and non-parametric baseline hazards yield very close results in estimating survival probabilities and thus a choice of parametric baseline hazard is generally preferred. We find that bone mineral density is a significant predictor in the model whereas frailty index is not. Low BMD leads to a larger probability of fracture; e.g, in 10 years, the probability of fracture is 21% for low BMD group, 16% for medium BMD group and 8% for high BMD group.
在生存分析中,协变量对结果的影响以危险率报告。然而,危险率很难解释。这里我们考虑的是生存概率的差异。使用双胞胎的数据是有趣的,因为许多观察到的和未观察到的因素是控制或匹配的。为了模拟双胞胎之间的相关性,一些作者提出了带有脆弱性或随机效应的生存模型。然而,如果脆弱分布被错误地指定,则在估计中存在潜在的偏倚危险。弱点通常被认为遵循伽玛分布。为了保护我们免受该分布的错误规范的影响,除了参数基线之外,我们还考虑了一个灵活的非参数基线危害。我们将把这种方法应用到TwinsUK队列中,根据他们的骨密度(BMD)和脆弱指数来预测未来5年或10年发生骨折的概率。具有参数和非参数基线风险的模型在估计生存概率方面产生非常接近的结果,因此通常首选参数基线风险的选择。我们发现骨密度在模型中是一个重要的预测因子,而虚弱指数不是。低骨密度导致骨折的可能性较大;例如,在10年内,低骨密度组发生骨折的概率为21%,中等骨密度组为16%,高骨密度组为8%。
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引用次数: 0
Editorial. 社论。
IF 1.5 4区 生物学 Q4 BIOLOGY Pub Date : 2021-01-01 DOI: 10.5771/0490-1606-2013-9-10-354
D. Lambert
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引用次数: 0
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Theoretical Biology Forum
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