Food and Environmental Virology最新文献

Human papillomavirus (HPV) is primarily transmitted through sexual contact and is classified into high- and low-risk genotypes based on their association with cancer development. High-risk (HR) genotypes, such as 16 and 18, among others, have been identified as responsible for the development of cervical cancer while low-risk (LR) genotypes, such as 6 and 11, among others, cause anogenital warts. The aim of this study was to determine the presence of HPV genotypes in wastewater from the wastewater treatment plant of the city of Salto, Uruguay in order to analyze the circulating HPV strains in their population. These samples were subjected to qualitative PCR analysis, and genotypes were identified through sequencing of the DNA products. HPV 6, 16, 31, 66, 81, 84, and 145 were frequently detected in wastewater and HPV 6 and 16 were the prevalent in cytological samples. A great diversity of genotypes was evident in the wastewater of the city. The approach of wastewater-based epidemiology as a representation of the circulating HPV genotypes in the population is adequate and an important tool for molecular epidemiologic studies mainly in developing countries such as Uruguay where information concerning genotypes circulation is scarce.

Tick-borne encephalitis virus (TBEV) is a neuroinvasive arbovirus that is primarily transmitted to humans through the bites of Ixodes ricinus ticks. Consumption of unpasteurised milk and dairy products from infected ruminants can also cause infection in humans. In the majority of food-borne TBE (FB-TBE) cases, goat milk and/or cheese has been identified as the source of infection. The aim of the present study was to analyse the persistence of the infectious strain TBEV_Ain_2020 virus in spiked goat and cow raw milks under different storage conditions, and following pasteurisations performed at 63 °C/30 min or 72 °C/15 s. The total genome of TBEV was stable up to 48 h in goat and cow’s milks at 4 °C and 21 °C. In contrast, the viral titre was significantly lower in goat milk from T + 2 h post-contamination up to 17 h compared to culture cell medium and cow milk at 4 °C. At 21 °C, viral titres were lower than in DMEM in both milks up to T + 12 h. Thermal inactivations were effective in goat milk, but were not sufficient to eliminate all infective virus particles in cow milk. These unexpected findings highlighted that pasteurisation processes should be adapted to the species of origin of the milk and to the initial viral load to ensure food safety.

Iron is a cofactor in various biological processes, primarily obtained through dietary intake and also through oral or intravenous supplementation. Elevated iron levels are associated with increased production of reactive oxygen species, causing cellular damage. Additionally, iron influences the body’s response to infections and participates in the synthesis of genetic material and cellular functions. Therefore, this review aims to explore the complex interplay between iron homeostasis and viral infections, analyzing how iron availability affects viral replication, possible mutations, and pathogenesis. The interaction between viruses and iron, although less explored in the literature, indicates the influence of host iron bioavailability on parasite–host interactions. Furthermore, iron absorption is regulated by hepcidin, a peptide hormone produced by the liver, which reduces blood iron levels by inhibiting ferroportin function. Iron is important in viral growth and activities, potentially promoting replication, possible mutations, and increased virulence as seen in some studies with respiratory, enteric, and other viral models. Thus, iron chelators can be a promising preventive therapeutic strategy to limit iron availability and thereby reduce viral infectivity.

Enveloped and non-enveloped virus transmission can occur via person-to-person contact and potentially through contaminated surfaces with human hands. Establishing the efficacy of hand sanitizers, including gel and foam formats, is crucial in reducing the transmission of viruses of human health concern, yet foam hand sanitizers are generally underexplored despite being widely used. Following American Society for Testing and Materials (ASTM) E1052-20, the efficacy of foam-based hand sanitizers—one non-alcohol-based hand sanitizer and four alcohol-based hand sanitizers with benzalkonium chloride and ethanol as active ingredients, respectively—were explored using bacteriophage phi6 (Φ6) as a surrogate for enveloped viruses and bacteriophage MS2 (Emesvirus zinderi) and Tulane virus (TuV) as surrogates for non-enveloped viruses. Significant differences in log reduction were observed among viruses (P ≤ 0.05). After a 10 s exposure, a 5.23 ± 1.64 log reduction was observed for Φ6 while MS2 remained resistant (0.04 ± 0.08 log₁₀ reduction). Conversely, significant log reductions (P ≤ 0.05) were observed for TuV across all foam-based hand sanitizer products ranging from 0.07 ± 0.1 to 1.09 ± 0.22. An exposure time of 10 s (i.e., the typical rubbing time in real-world scenarios following hand sanitizer application) is likely sufficient for enveloped virus inactivation based on the inactivation of bacteriophage Φ6 by the tested commercially available products. However, longer exposure times or different hand sanitizer formulations may be required to achieve similar log reductions against non-enveloped viruses such as human norovirus based on the surrogates (MS2, TuV) tested.

This study investigated the prevalence and genetic diversity of human astrovirus (HAstV), hepatitis A virus (HAV), and hepatitis E virus (HEV) in bivalve mollusks (mussels and oysters) marketed in three tourist cities in the State of Rio de Janeiro, Brazil, from January to December 2022. One hundred and thirty-four samples were processed according to the ISO 15216-1:2017 (Microbiology of food a chain—horizontal method for determination of hepatitis A virus and norovirus in food using real-time RTPCR—Part 1: method for quantification, vol 2017. International Organization for Standardization, Geneva, pp 1–48, 2017), and viral screening was performed by the TaqMan real-time RT-qPCR. HAstV RNA was detected in 13.9% (10/72) of the oyster samples and 14.5% (9/62) of the mussel samples. HAV RNA was detected in 8.1% (5/62) of the mussels, while HEV RNA was not detected in any of the analyzed bivalves. The molecular characterization revealed that HAstV strains detected in live oysters belonged to both classical (HAstV-1) and non-classical (MLB-1) genotypes. The HAV-IA genotype was detected in mussel samples and segregated into two subclusters. This study reports the presence of HAstV and HAV in oysters and mussels marketed in Brazil for the first time. The findings indicate local water contamination in the bivalve sampling areas, highlighting the importance of environmental monitoring and surveillance improvements, particularly in shellfish production areas.

Human norovirus (HuNoV) is the primary cause of gastroenteritis globally. Due to the lack of a reliable cultivation system, RT-qPCR is a gold standard technique for the detection and quantification of HuNoV. However, the inability of PCR to differentiate between infectious from non-infectious particles remains a significant limitation. This study aims to address this limitation by exploring the relationship between culture-based (plaque assay and TCID₅₀) and non-culture-based (RT-qPCR) methods for HuNoV quantification, using Tulane virus as a cultivable surrogate. The ultracentrifuge-purified Tulane virus at 6.7 log₁₀ PFU/ml or 5.8 log₁₀ TCID₅₀/ml in Tris–EDTA buffer (pH 7.2), was serially diluted and subjected to RNA extraction, with or without RNase pretreatment, followed by quantification with RT-qPCR. Further physical characterization of the virus stock was performed with dynamic light scattering and transmission electron microscopy. A strong correlation (Pearson’s Correlation Coefficient of 0.99) was observed between log₁₀ genome copies (GC) and log₁₀ plaque forming units (PFU) per PCR reaction for both RNase-pretreated and unpretreated samples. Beta distributions indicated a similar median GC:PFU ratio of ca. 3.7 log₁₀ for both RNase-pretreated and unpretreated samples. The high GC:PFU ratio may indicate the sensitive nature of RT-qPCR or the presence of intact, non-infectious virus particles. The outcomes of this study will contribute to the more accurate estimation of infectious norovirus particles in food and environmental matrices.

Graphical Abstract

Created in BioRender. Mirmahdi, R. (2024) https://BioRender.com/l49a583

Surfaces contaminated with enveloped viruses, such as severe acute respiratory syndrome coronavirus 2 and influenza virus, can potentially spread illness via hand contact. Often, the efficacy of hand hygiene interventions relies on virus recovery from hands. However, the recovery of bacteriophage phi6 (Φ6), a recommended surrogate for enveloped viruses, from the entire hands using the ASTM E2011-21 standard has not been optimized. For Φ6 recovery from the hands, three eluents [lysogeny broth (LC), tryptic soy broth (TSB), and 1.5% beef extract (BE)] and three recovery methods [glove juice method (GJM), hand rinsing, and modified dish method] were examined. The effects of inoculum application on either the palmar surface or the whole hand were compared, and virus recovery was assessed under wet and dry conditions to identify the optimal combinations for maximizing Φ6 recovery. Statistical differences among methods, inoculum application, and recovery types were identified. While no statistical difference was observed among the eluents (P = 0.281), LC demonstrated the highest Φ6 recovery efficiency, while TSB and BE had comparable recoveries. Two-way interaction effects were observed between method type vs. application type (P ≤ 0.05), method type vs. recovery type (P ≤ 0.05), and application type vs. recovery type (P ≤ 0.05), indicating these factors influencing one another. Additionally, no Φ6 recovery was obtained for the dry basis recovery type and the GJM method type. Based on the present study, to maximize Φ6 recovery from the hands during hand hygiene studies, inoculum should be applied to the palmar surface and recovered while it is still wet using LC.

Paslahepevirus balayani (hepatitis E virus) is a zoonotic pathogen, with rabbit Paslahepevirus balayani (HEV-3ra) being widely distributed among global rabbit populations. Notably, in China, rabbits constitute a significant HEV host, second only to swine. Emerging evidence suggests that HEV-3ra possesses the capability to cross species barriers and infect humans. Against this backdrop, our investigation aimed to delineate the HEV infection status and epidemiological patterns in the commercial rabbits of Hebei Province, China. We collected 386 liver and 100 fecal samples across four regions in Hebei Province. Detection of HEV RNA in these specimens was achieved by employing reverse transcription quantitative polymerase chain reaction (RT-qPCR) and reverse transcription nested PCR (RT-Nested PCR), focusing on the amplification of a segment of the open reading frame 2 (ORF2) and the complete genome. Among the 486 samples, 73 were tested positive for HEV RNA, resulting in an overall positive rate of 15.0%. The positive rates for liver and fecal samples were 11.7% (45/386) and 28.0% (28/100), respectively. The study successfully obtained 38 partial ORF2 sequences and 5 complete genome sequences. Sequence analysis revealed that the complete genome sequences shared 86.0–94.5% nucleotide identity with HEV-3ra sequences in GenBank. Phylogenetic analysis confirmed that all strains belonged to HEV-3ra and were closely related to previously reported sequences from China. This study provides the first comprehensive genomic overview of circulating HEV-3ra strains in Hebei, offering valuable insights into the infection dynamics and prevalence of HEV-3ra among commercial rabbits, which can inform public health strategies.

Viruses can interact with a broad range of inorganic and organic particles in water and wastewater. These associations can protect viruses from inactivation by quenching chemical disinfectants or blocking ultraviolet light transmission, and a much higher dosage of disinfectants is required to inactivate particle-associated viruses than free viruses. There have been only few studies of the association of viruses with particles in wastewater, particularly in secondary treated effluent. As secondary effluent is the source water to the reclaimed water treatment system, this study quantified indigenous enteric viruses, and viral indicators associated with particles in secondary effluents collected from five full-scale water reclamation facilities in the United States. Particle-associated viruses were enumerated using a sequential filtration followed by microfluidic digital PCR. This study showed that enteric viruses and viral indicators (crAssphage and pepper mild mottle virus, PMMoV) were attached to particles of different sizes in secondary effluent. Significantly higher concentrations of RNA viruses including PMMoV, norovirus, and enterovirus were detected in filtrate of the sequential filtration, which contained particles < 0.45 µm. DNA viruses including adenovirus and crAssphage were found to be more associated with larger particles in secondary effluent. Overall, high correlations were observed between viral indicators and enteric viruses, supporting the use of crAssphage and PMMoV to evaluate virus removal efficiency in water and wastewater treatment processes. The association of viruses with particles in wastewater has significant implications on wastewater treatment and disinfection processes as well as virus enumeration in wastewater.

Graphic Abstract

Invasive alien species such as freshwater snails have significantly affected the food, environment, and the health of humans and animals, which have unfortunately received insufficient attention. To facilitate the study of viromes in snail species, we compared the enrichment effect of cesium chloride (CsCl) and sucrose density gradient ultracentrifugations in the recovery of diverse viruses in Pomacea canaliculata and Achatina fulica. First, we showed that CsCl-based ultracentrifugation enriched more virus contigs and reduced the nucleic acid background of the Pomacea canaliculata and was thus beneficial for virus recovery. Further studies comparing CsCl- and sucrose-based density gradient ultracentrifugations revealed that the former enriched more viral contigs and viral families of RNA viruses, while the latter yielded more DNA viruses from both Pomacea canaliculata and Achatina fulica. Certain RNA virus families, such as Rhabdoviridae, Arenaviridae, Hepeviridae, Astroviridae, and Alphatetraviridae, were exclusively enriched by CsCl-based ultracentrifugation. Conversely, several DNA virus families including Bacilladnaviridae, Nudiviridae, Malacoherpesviridae, and Adintoviridae were solely identified using the sucrose-based method. Therefore, the selection of viral enrichment technique (either CsCl or sucrose density gradient ultracentrifugation) should be carefully considered based on the specific virome (DNA or RNA viruses) being studied in mollusk species.