Pub Date : 2024-09-04DOI: 10.1134/S0022476624080043
A. S. Pronin, T. S. Sukhikh, Y. V. Mironov
The (Bu4N)2[{Mo6I8}(CN)5(OEt)]·2H2O and (Bu4N)2[{W6I8}(CN)4(OEt)2]·H2O·EtOH cluster complexes are prepared by the reaction of (Bu4N)2[{M6I8}I6] (M = Mo, W) with NaCN in ethanol and subsequent recrystallization from an aqueous ethanol solution. The structure of both compounds is determined by XRD. The external ligand environment of the anions contains CN– and OEt– ligands. The behavior of the complexes in an aqueous solution is studied by electron spectroscopy.
{"title":"New Heteroligand Octahedral Cluster Complexes of Molybdenum and Tungsten","authors":"A. S. Pronin, T. S. Sukhikh, Y. V. Mironov","doi":"10.1134/S0022476624080043","DOIUrl":"10.1134/S0022476624080043","url":null,"abstract":"<p>The (Bu<sub>4</sub>N)<sub>2</sub>[{Mo<sub>6</sub>I<sub>8</sub>}(CN)<sub>5</sub>(OEt)]·2H<sub>2</sub>O and (Bu<sub>4</sub>N)<sub>2</sub>[{W<sub>6</sub>I<sub>8</sub>}(CN)<sub>4</sub>(OEt)<sub>2</sub>]·H<sub>2</sub>O·EtOH cluster complexes are prepared by the reaction of (Bu<sub>4</sub>N)<sub>2</sub>[{<i>M</i><sub>6</sub>I<sub>8</sub>}I<sub>6</sub>] (<i>M</i> = Mo, W) with NaCN in ethanol and subsequent recrystallization from an aqueous ethanol solution. The structure of both compounds is determined by XRD. The external ligand environment of the anions contains CN<sup>–</sup> and OEt<sup>–</sup> ligands. The behavior of the complexes in an aqueous solution is studied by electron spectroscopy.</p>","PeriodicalId":668,"journal":{"name":"Journal of Structural Chemistry","volume":"65 8","pages":"1513 - 1520"},"PeriodicalIF":1.2,"publicationDate":"2024-09-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142222802","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-04DOI: 10.1134/S0022476624080158
G. S. Zabrodina, R. V. Rumyantsev, M. A. Katkova, S. Y. Ketkov
The addition of tartrate, oxalate and citrate anions during the one-pot synthesis of 12-MC-4 metallacrown based on β-alaninehydroximate ligands leads, respectively, to dimeric complex Cu10(β-alaha)8 (tartrate)2·10H2O (1) and two one-dimensional coordination polymers, Cu5(β-alaha)4Cu(oxalate)2·8H2O (2) and Cu10(β-alaha)8Cu(citrate)2·19H2O (3). According to X-ray diffraction data for 2 and 3, in the presence of oxalate and citrate anions, infinite chains containing alternating molecules of cationic copper (II) 12 –MC-4 metallacrown and polycarboxylate cuprate anion are formed in crystals. The distance between the metallacrown molecules in the crystal depends significantly on the choice of the initial polycarboxylate anion. In contrast to the oxalate and citrate anions, the dibasic tartrate guest anion does not lead to the formation of endless one-dimensional chains in the crystal. In this case, dimeric complex 1 is formed, for which short Cu–O contacts occur between neighboring 12-MC-4 metallamacrocycles.
{"title":"Features of the Crystal Structure of Polynuclear Metallamacrocyclic Copper (II) Complexes Containing Polycarboxylate Anions","authors":"G. S. Zabrodina, R. V. Rumyantsev, M. A. Katkova, S. Y. Ketkov","doi":"10.1134/S0022476624080158","DOIUrl":"10.1134/S0022476624080158","url":null,"abstract":"<p>The addition of tartrate, oxalate and citrate anions during the one-pot synthesis of 12-MC-4 metallacrown based on β-alaninehydroximate ligands leads, respectively, to dimeric complex Cu<sub>10</sub>(β-alaha)<sub>8</sub> (tartrate)<sub>2</sub>·10H<sub>2</sub>O (<b>1</b>) and two one-dimensional coordination polymers, Cu<sub>5</sub>(β-alaha)<sub>4</sub>Cu(oxalate)<sub>2</sub>·8H<sub>2</sub>O (<b>2)</b> and Cu<sub>10</sub>(β-alaha)<sub>8</sub>Cu(citrate)<sub>2</sub>·19H<sub>2</sub>O (<b>3</b>). According to X-ray diffraction data for <b>2</b> and <b>3</b>, in the presence of oxalate and citrate anions, infinite chains containing alternating molecules of cationic copper (II) 12 –MC-4 metallacrown and polycarboxylate cuprate anion are formed in crystals. The distance between the metallacrown molecules in the crystal depends significantly on the choice of the initial polycarboxylate anion. In contrast to the oxalate and citrate anions, the dibasic tartrate guest anion does not lead to the formation of endless one-dimensional chains in the crystal. In this case, dimeric complex <b>1</b> is formed, for which short Cu–O contacts occur between neighboring 12-MC-4 metallamacrocycles.</p>","PeriodicalId":668,"journal":{"name":"Journal of Structural Chemistry","volume":"65 8","pages":"1641 - 1658"},"PeriodicalIF":1.2,"publicationDate":"2024-09-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142222811","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-04DOI: 10.1134/S0022476624080109
M. A. Builova, S. V. Erohin, P. B. Sorokin
The machine learning potential (MLP) is proposed based on the representation of the environment through moment tensors to model the diamond phase nucleation in misoriented bilayer graphene. MLP is trained on a set of graphene structures, 2D diamond, and their hydrogenated modifications obtained by density functional theory computations. Learned MLP accurately reproduces energies and strengths of these structures and correctly describes hydrogenation of bilayer graphene and the formation of interlayer bonds. Growth of the diamond phase in bigraphene with a 5° misorientation of layers is studied using MLP. It is found that the formation energy increases with an increase in the number of hydrogen atoms, which indicates hydrogen cluster nucleation on the surface of bilayer graphene. Hydrogenation of the system leads to the growth of the cubic diamond region up to the AA′ stacking promoting the formation of lonsdaleite with the ((10bar{1}0)) surface. This fact allows us to draw the conclusion about the adequacy of the potential obtained.
{"title":"Machine Learning Potential to Model the Diamond Phase Nucleation in Misoriented Bilayer Graphene","authors":"M. A. Builova, S. V. Erohin, P. B. Sorokin","doi":"10.1134/S0022476624080109","DOIUrl":"10.1134/S0022476624080109","url":null,"abstract":"<p>The machine learning potential (MLP) is proposed based on the representation of the environment through moment tensors to model the diamond phase nucleation in misoriented bilayer graphene. MLP is trained on a set of graphene structures, 2D diamond, and their hydrogenated modifications obtained by density functional theory computations. Learned MLP accurately reproduces energies and strengths of these structures and correctly describes hydrogenation of bilayer graphene and the formation of interlayer bonds. Growth of the diamond phase in bigraphene with a 5° misorientation of layers is studied using MLP. It is found that the formation energy increases with an increase in the number of hydrogen atoms, which indicates hydrogen cluster nucleation on the surface of bilayer graphene. Hydrogenation of the system leads to the growth of the cubic diamond region up to the AA′ stacking promoting the formation of lonsdaleite with the <span>((10bar{1}0))</span> surface. This fact allows us to draw the conclusion about the adequacy of the potential obtained.</p>","PeriodicalId":668,"journal":{"name":"Journal of Structural Chemistry","volume":"65 8","pages":"1595 - 1602"},"PeriodicalIF":1.2,"publicationDate":"2024-09-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142222807","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-04DOI: 10.1134/S0022476624080018
B. Chowdhury, R. Nandy, N. C. Jana, P. Brandão, A. Panja
Thiocyanate bridged homometallic Ni(II) chains have potential applications in areas such as molecular magnetism and spintronics due to their tunable magnetic properties. The magnetic properties of these chains are of particular interest and can lead to intriguing magnetic behaviors, such as antiferromagnetic or ferromagnetic interactions. In this context, we have successfully synthesized a (text{Ni(NCS)}_{text{6}}^{text{4}-}) bridge Ni(II) chain complex [Ni2(H2L)2(μ1,3-NCS)2(NCS)4]n∙2nCH3CN (1), derived from a tetradentate N3O donor Schiff base ligand (HL). It has been thoroughly characterized by the help of elemental analysis and IR spectroscopy. Single crystal X-ray crystallography has confirmed the geometry of the chain complexes. Both Ni1 and Ni2 centers exhibit hexa-coordination with slightly distorted octahedral geometries, and their coordination environments differ significantly (NiN2O2S2 for Ni1 and NiN6 for Ni2). Within the solid-state structure of the complex, a noteworthy two-dimensional network of hydrogen bonding is observed. The present complex showing a unique example in the realm of single thiocyanato-bridged Ni(II) chains.
{"title":"The First Structural Characterization of a (mathbf{Ni(NCS)}_{mathbf{6}}^{mathbf{4}-}) Bridged Homometallic Ni(II) Chain Derived from an N3O Donor Schiff Base Ligand","authors":"B. Chowdhury, R. Nandy, N. C. Jana, P. Brandão, A. Panja","doi":"10.1134/S0022476624080018","DOIUrl":"10.1134/S0022476624080018","url":null,"abstract":"<p>Thiocyanate bridged homometallic Ni(II) chains have potential applications in areas such as molecular magnetism and spintronics due to their tunable magnetic properties. The magnetic properties of these chains are of particular interest and can lead to intriguing magnetic behaviors, such as antiferromagnetic or ferromagnetic interactions. In this context, we have successfully synthesized a <span>(text{Ni(NCS)}_{text{6}}^{text{4}-})</span> bridge Ni(II) chain complex [Ni<sub>2</sub>(H<sub>2</sub>L)<sub>2</sub>(μ1,3-NCS)<sub>2</sub>(NCS)<sub>4</sub>]<sub><i>n</i></sub>∙2<i>n</i>CH<sub>3</sub>CN (<b>1</b>), derived from a tetradentate N<sub>3</sub>O donor Schiff base ligand (HL). It has been thoroughly characterized by the help of elemental analysis and IR spectroscopy. Single crystal X-ray crystallography has confirmed the geometry of the chain complexes. Both Ni1 and Ni2 centers exhibit hexa-coordination with slightly distorted octahedral geometries, and their coordination environments differ significantly (NiN<sub>2</sub>O<sub>2</sub>S<sub>2</sub> for Ni1 and NiN<sub>6</sub> for Ni2). Within the solid-state structure of the complex, a noteworthy two-dimensional network of hydrogen bonding is observed. The present complex showing a unique example in the realm of single thiocyanato-bridged Ni(II) chains.</p>","PeriodicalId":668,"journal":{"name":"Journal of Structural Chemistry","volume":"65 8","pages":"1477 - 1487"},"PeriodicalIF":1.2,"publicationDate":"2024-09-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142227885","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-04DOI: 10.1134/S0022476624080031
A. B. Kuznetsov, A. Y. Jamous, V. A. Svetlichnyi, V. S. Shevchenko, A. E. Kokh, Yu. M. Andreev, K. A. Kokh
The Sr3B2O6–YbBO3 diagram was constructed based on samples obtained by the solid-state synthesis. In the system YbBO3, Sr3Yb(BO3)3, Sr3Yb2(BO3)4 and Sr3B2O6 phases were identified by XRD analysis. Diffusion experiments showed formation of solid solutions between all compounds. These solid solutions demonstrate typical near-infrared luminescence in the range of 960-1020 nm, characteristic of Yb3+ and related to 2F5/2 → 2F7/2 transitions in ytterbium ions.
{"title":"Luminescence Properties of Solid-Solutions in Sr3B2O6–YbBO3 System","authors":"A. B. Kuznetsov, A. Y. Jamous, V. A. Svetlichnyi, V. S. Shevchenko, A. E. Kokh, Yu. M. Andreev, K. A. Kokh","doi":"10.1134/S0022476624080031","DOIUrl":"10.1134/S0022476624080031","url":null,"abstract":"<p>The Sr<sub>3</sub>B<sub>2</sub>O<sub>6</sub>–YbBO<sub>3</sub> diagram was constructed based on samples obtained by the solid-state synthesis. In the system YbBO<sub>3</sub>, Sr<sub>3</sub>Yb(BO<sub>3</sub>)<sub>3</sub>, Sr<sub>3</sub>Yb<sub>2</sub>(BO<sub>3</sub>)<sub>4</sub> and Sr<sub>3</sub>B<sub>2</sub>O<sub>6</sub> phases were identified by XRD analysis. Diffusion experiments showed formation of solid solutions between all compounds. These solid solutions demonstrate typical near-infrared luminescence in the range of 960-1020 nm, characteristic of Yb<sup>3+</sup> and related to <sup>2</sup><i>F</i><sub>5/2</sub> → <sup>2</sup><i>F</i><sub>7/2</sub> transitions in ytterbium ions.</p>","PeriodicalId":668,"journal":{"name":"Journal of Structural Chemistry","volume":"65 8","pages":"1502 - 1512"},"PeriodicalIF":1.2,"publicationDate":"2024-09-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142222798","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-04DOI: 10.1134/S002247662408002X
E. N. Ermakova, E. A. Maksimovsky, A. D. Fedorenko, A. A. Shapovalova, E. A. Khizhnyak, M. L. Kosinova
SiBCN films are synthesized by plasma-enhanced chemical vapor deposition at a reduced pressure and 500-600 °C. Organoelement silicon and boron compounds are selected as precursors, namely, hexamethyldisilazane HN(SiMe3)2 and triethylaminoborane Et3N·BH3 that were not used previously in the synthesis of SiBCN films. Vapor flows of initial compounds and additional gas (ammonia) were separately supplied to the reactor without premixing. The chemical bonding structure, elemental composition, surface morphology, and film deposition rate are studied by FTIR, XPS, wave dispersive X-ray spectroscopy, SEM, and Raman spectroscopy techniques. The surface morphology analysis of the samples shows that the films are smooth, homogeneous, and uniform without features. Variation of precursor concentrations in the initial mixture allows changes in the film composition in a wide range. The boron concentration in four-component coatings reaches 45 at.%. The study of chemical bonding structures of the films reveals the occurrence of Si–C, Si–N, B–N, C–H bonds along with the hybrid BCnN3–n bond.
{"title":"Synthesis and Analysis of SiBCN Films Obtained by Plasma-Enhanced Chemical Vapor Deposition from Triethylaminoborane, Hexamethyldisilazane, and Ammonia","authors":"E. N. Ermakova, E. A. Maksimovsky, A. D. Fedorenko, A. A. Shapovalova, E. A. Khizhnyak, M. L. Kosinova","doi":"10.1134/S002247662408002X","DOIUrl":"10.1134/S002247662408002X","url":null,"abstract":"<p>SiBCN films are synthesized by plasma-enhanced chemical vapor deposition at a reduced pressure and 500-600 °C. Organoelement silicon and boron compounds are selected as precursors, namely, hexamethyldisilazane HN(SiMe<sub>3</sub>)<sub>2</sub> and triethylaminoborane Et<sub>3</sub>N·BH<sub>3</sub> that were not used previously in the synthesis of SiBCN films. Vapor flows of initial compounds and additional gas (ammonia) were separately supplied to the reactor without premixing. The chemical bonding structure, elemental composition, surface morphology, and film deposition rate are studied by FTIR, XPS, wave dispersive X-ray spectroscopy, SEM, and Raman spectroscopy techniques. The surface morphology analysis of the samples shows that the films are smooth, homogeneous, and uniform without features. Variation of precursor concentrations in the initial mixture allows changes in the film composition in a wide range. The boron concentration in four-component coatings reaches 45 at.%. The study of chemical bonding structures of the films reveals the occurrence of Si–C, Si–N, B–N, C–H bonds along with the hybrid BC<sub><i>n</i></sub>N<sub>3–<i>n</i></sub> bond.</p>","PeriodicalId":668,"journal":{"name":"Journal of Structural Chemistry","volume":"65 8","pages":"1488 - 1501"},"PeriodicalIF":1.2,"publicationDate":"2024-09-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142222800","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-04DOI: 10.1134/S0022476624080067
E. S. Vikulova, K. P. Cheremnykh, A. A. Vinogradova, A. S. Sukhikh, S. I. Dorovskikh, I. Y. Ilyin, D. P. Pishchur, N. B. Morozova
First example of a Zr(IV) complex with an aromatic carboxyamidate ligand, Zr(mba)4 (mba = N-methoxybenzamidate), is prepared. Its structures in the solution (1H, 13C{1H} NMR) and in the crystal phase (single-crystal XRD) are determined and compared with those of the initial N-methoxybenzamide Hmba. During the complexation, mba– ligands exhibit a bidentate cyclic function through oxygen atoms. The coordination polyhedron of the metal atom is a distorted square antiprism, the lengths of Zr–O bonds with carbonyl and methoxy groups fall within 2.08-2.09 Å and 2.29-2.33 Å, respectively. Despite the presence of available phenyl rings, the Zr(mba)4 and Hmba crystals contain no intermolecular π–π-interactions, but exhibit C–H⋯π and N–H⋯O contacts, respectively. According to the DSC data, Hmba undergoes no phase transitions from 130 K up to the melting point (335.0±0.5 K, ΔH = 15.1±0.1 kJ/mol, ΔS = 45.2±0.2 J/(mol·K)), while Zr(mba)4 exhibits a reversible solid-phase transition (Tonset = 177.4±0.5 K, ΔH = 0.68±0.20 kJ/mol, ΔS = 3.8±0.1 J/(mol·K)). Studying the Zr(mba)4 crystals at 150 K and 200 K shows that this transition is not accompanied by the crystal deformation and is apparently caused by the rotation of phenyl groups. Due to this conversation, the space group changes from P21/c to P21/n, and one of the unit cell parameters increases by 3 times.
{"title":"Zirconium(IV) N-Methoxybenzamidate vs. N-Methoxybenzamide: Synthesis, Crystal Structure, and Phase Transitions","authors":"E. S. Vikulova, K. P. Cheremnykh, A. A. Vinogradova, A. S. Sukhikh, S. I. Dorovskikh, I. Y. Ilyin, D. P. Pishchur, N. B. Morozova","doi":"10.1134/S0022476624080067","DOIUrl":"10.1134/S0022476624080067","url":null,"abstract":"<p>First example of a Zr(IV) complex with an aromatic carboxyamidate ligand, Zr(mba)<sub>4</sub> (mba = N-methoxybenzamidate), is prepared. Its structures in the solution (<sup>1</sup>H, <sup>13</sup>C{<sup>1</sup>H} NMR) and in the crystal phase (single-crystal XRD) are determined and compared with those of the initial N-methoxybenzamide Hmba. During the complexation, mba<sup>–</sup> ligands exhibit a bidentate cyclic function through oxygen atoms. The coordination polyhedron of the metal atom is a distorted square antiprism, the lengths of Zr–O bonds with carbonyl and methoxy groups fall within 2.08-2.09 Å and 2.29-2.33 Å, respectively. Despite the presence of available phenyl rings, the Zr(mba)<sub>4</sub> and Hmba crystals contain no intermolecular π–π-interactions, but exhibit C–H⋯π and N–H⋯O contacts, respectively. According to the DSC data, Hmb<i>a</i> undergoes no phase transitions from 130 K up to the melting point (335.0±0.5 K, Δ<i>H</i> = 15.1±0.1 kJ/mol, Δ<i>S</i> = 45.2±0.2 J/(mol·K)), while Zr(mba)<sub>4</sub> exhibits a reversible solid-phase transition (<i>T</i><sub>onset</sub> = 177.4±0.5 K, Δ<i>H</i> = 0.68±0.20 kJ/mol, Δ<i>S</i> = 3.8±0.1 J/(mol·K)). Studying the Zr(mba)<sub>4</sub> crystals at 150 K and 200 K shows that this transition is not accompanied by the crystal deformation and is apparently caused by the rotation of phenyl groups. Due to this conversation, the space group changes from <i>P</i>2<sub>1</sub>/<i>c</i> to <i>P</i>2<sub>1</sub>/<i>n</i>, and one of the unit cell parameters increases by 3 times.</p>","PeriodicalId":668,"journal":{"name":"Journal of Structural Chemistry","volume":"65 8","pages":"1531 - 1540"},"PeriodicalIF":1.2,"publicationDate":"2024-09-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142222801","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-04DOI: 10.1134/S0022476624080079
K. C. Naik, S. Moharana, B. R. Paital, A. K. Sutar, H. S. Sahoo
1,2,4-Oxadiazole based unsymmetric bidentate ligand, 3,5-bis-(4-pyridyl)-1,2,4-oxadiazole has been employed for complexation with silver nitrate; this ligand has been used for the first time for preparation of any coordination complex. A polymeric array of one-dimensional silver-ligand complex is formed where each metal ion is coordinated to two 4-pyridyl groups of two different ligands and two O-atoms of a nitrate ion. Single crystal X-ray data shows presence of hydrogen bonding and π–π stacking between each one-dimensional array which leads to formation of channels in its solid state. The hydrogen bonding interactions have also been verified by Hirsfeld surface analysis plots. Antimicrobial property study of ligand 3,5-bis-(4-pyridyl)-1,2,4-oxadiazole has been performed with Lactobacillus plantarum and it inhibits the growth at 12.5 μg/mL.
摘要 1,2,4-噁二唑基不对称双齿配体 3,5-双-(4-吡啶基)-1,2,4-噁二唑被用于与硝酸银的络合;这是首次使用这种配体制备配位络合物。在这种配体中,每个金属离子都与两个不同配体的两个 4-吡啶基和一个硝酸根离子的两个 O 原子配位。单晶 X 射线数据显示,每个一维阵列之间存在氢键和 π-π 堆积,从而在固态下形成通道。氢键相互作用也通过赫斯菲尔德表面分析图得到了验证。配体 3,5-双-(4-吡啶基)-1,2,4-恶二唑的抗菌特性研究是在植物乳杆菌中进行的,在 12.5 μg/mL 的浓度下,它能抑制植物乳杆菌的生长。
{"title":"3,5-bis(4-pyridyl)-1,2,4-Oxadiazole: an Unsymmetric Bidentate Ligand, Polymeric Silver Complex and Antimicrobial Activity Study","authors":"K. C. Naik, S. Moharana, B. R. Paital, A. K. Sutar, H. S. Sahoo","doi":"10.1134/S0022476624080079","DOIUrl":"10.1134/S0022476624080079","url":null,"abstract":"<p>1,2,4-Oxadiazole based unsymmetric bidentate ligand, 3,5-bis-(4-pyridyl)-1,2,4-oxadiazole has been employed for complexation with silver nitrate; this ligand has been used for the first time for preparation of any coordination complex. A polymeric array of one-dimensional silver-ligand complex is formed where each metal ion is coordinated to two 4-pyridyl groups of two different ligands and two O-atoms of a nitrate ion. Single crystal X-ray data shows presence of hydrogen bonding and π–π stacking between each one-dimensional array which leads to formation of channels in its solid state. The hydrogen bonding interactions have also been verified by Hirsfeld surface analysis plots. Antimicrobial property study of ligand 3,5-bis-(4-pyridyl)-1,2,4-oxadiazole has been performed with <i>Lactobacillus plantarum</i> and it inhibits the growth at 12.5 μg/mL.</p>","PeriodicalId":668,"journal":{"name":"Journal of Structural Chemistry","volume":"65 8","pages":"1541 - 1549"},"PeriodicalIF":1.2,"publicationDate":"2024-09-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142222803","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-04DOI: 10.1134/S0022476624080134
M. I. Rakhmanova, D. G. Samsonenko, E. A. Kovalenko
Supramolecular adducts of lanthanide complexes with cucurbituril, [{Eu(1–x)Nd(1+x)(H2O)5(NO3)}2 CB[6]](NO3)4·HNO3·6H2O (x = 0.5, –0.5), are prepared by heating a mixture of dissolved lanthanide nitrates and cucurbit[6]uril. According to the single-crystal XRD data for 1 and 2, the metal is connected to the macrocycle through the bidentate coordination of oxygen atoms of cucurbit[6]uril portals to the lanthanide(III) cations, thus leading to the formation of a molecular complex. In the crystal, the [{Ln(H2O)5(NO3)}2(CB[6])]4+ cations are interconnected by a system of hydrogen bonds. The compounds are shown to be isostructural and are characterized by a number of physicochemical methods: IR spectroscopy, powder XRD, and elemental analysis. Their luminescence spectra are recorded.
{"title":"Synthesis, Crystal Structure and Luminescent Properties of [{Eu(1–x)Nd(1+x)(H2O)5(NO3)}2CB[6]] (NO3)4·HNO3·6H2O (x = 0.5, –0.5)","authors":"M. I. Rakhmanova, D. G. Samsonenko, E. A. Kovalenko","doi":"10.1134/S0022476624080134","DOIUrl":"10.1134/S0022476624080134","url":null,"abstract":"<p>Supramolecular adducts of lanthanide complexes with cucurbituril, [{Eu<sub>(1–<i>x</i>)</sub>Nd<sub>(1+<i>x</i>)</sub>(H<sub>2</sub>O)<sub>5</sub>(NO<sub>3</sub>)}<sub>2</sub> CB[6]](NO<sub>3</sub>)<sub>4</sub>·HNO<sub>3</sub>·6H<sub>2</sub>O (<i>x</i> = 0.5, –0.5), are prepared by heating a mixture of dissolved lanthanide nitrates and cucurbit[6]uril. According to the single-crystal XRD data for <b>1 </b>and<b> 2</b>, the metal is connected to the macrocycle through the bidentate coordination of oxygen atoms of cucurbit[6]uril portals to the lanthanide(III) cations, thus leading to the formation of a molecular complex. In the crystal, the [{Ln(H<sub>2</sub>O)<sub>5</sub>(NO<sub>3</sub>)}<sub>2</sub>(CB[6])]<sup>4+</sup> cations are interconnected by a system of hydrogen bonds. The compounds are shown to be isostructural and are characterized by a number of physicochemical methods: IR spectroscopy, powder XRD, and elemental analysis. Their luminescence spectra are recorded.</p>","PeriodicalId":668,"journal":{"name":"Journal of Structural Chemistry","volume":"65 8","pages":"1624 - 1630"},"PeriodicalIF":1.2,"publicationDate":"2024-09-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142222810","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-04DOI: 10.1134/S0022476624080092
H. Özşanlı, S. N. Aygün, U. Çoruh, E. Ağar
In this study, experimental methods X-ray single crystal analysis, UV-Vis spectroscopy and FTIR spectroscopy, and theoretical method Density Functional Theory (DFT) were used to study the structure of the new Schiff base (E)-N-(2,6-dichlorophenyl)-1-(5-nitro-2-(piperidin-1-yl)phenyl) methanamine. Theoretical calculations of the title compound and FTIR harmonic vibration frequencies were carried out using B3LYP methods with the 6-31G(d,p) basis set. The optical properties have been studied by DFT calculation and the experimental UV-Vis spectrum presents its contribution to the HOMO‒LUMO boundary. The molecular electrostatic potential map (MEP-ESP), analysis of frontier molecular orbitals (FMO), and determination of thermodynamic properties for the title compound were conducted using identical levels of theory. Besides, the structural state and crystal packing of the title compound were analyzed using molecular structure, Hirshfeld surfaces, interactions energies, energy frameworks and electrophilicity-based charge transfer (ECT) with DNA bases.
摘要 本研究采用 X 射线单晶分析、紫外可见光谱和傅立叶变换红外光谱等实验方法和密度泛函理论(DFT)等理论方法研究了新的席夫碱 (E)-N-(2,6-dichlorophenyl)-1-(5-nitro-2-(piperidin-1-yl)phenyl) methanamine 的结构。采用 6-31G(d,p) 基集的 B3LYP 方法对标题化合物和傅立叶变换红外谐振频率进行了理论计算。通过 DFT 计算研究了其光学性质,实验紫外可见光谱显示了其对 HOMO-LUMO 边界的贡献。利用相同的理论水平对标题化合物进行了分子静电位图(MEP-ESP)、前沿分子轨道(FMO)分析和热力学性质测定。此外,还利用分子结构、Hirshfeld 表面、相互作用能、能量框架以及与 DNA 碱基的亲电电荷转移(ECT)分析了标题化合物的结构状态和晶体堆积。
{"title":"Synthesis, Spectroscopic, Crystal Structure, Hirshfeld Surface Analysis and DFT Calculations of (E)-N-(2,6-dichlorophenyl)-1-(5-nitro-2-(piperidin-1-yl)phenyl) Methanamine","authors":"H. Özşanlı, S. N. Aygün, U. Çoruh, E. Ağar","doi":"10.1134/S0022476624080092","DOIUrl":"10.1134/S0022476624080092","url":null,"abstract":"<p>In this study, experimental methods X-ray single crystal analysis, UV-Vis spectroscopy and FTIR spectroscopy, and theoretical method Density Functional Theory (DFT) were used to study the structure of the new Schiff base (<i>E</i>)-<i>N</i>-(2,6-dichlorophenyl)-1-(5-nitro-2-(piperidin-1-yl)phenyl) methanamine. Theoretical calculations of the title compound and FTIR harmonic vibration frequencies were carried out using B3LYP methods with the 6-31G(<i>d</i>,<i>p</i>) basis set. The optical properties have been studied by DFT calculation and the experimental UV-Vis spectrum presents its contribution to the HOMO‒LUMO boundary. The molecular electrostatic potential map (MEP-ESP), analysis of frontier molecular orbitals (FMO), and determination of thermodynamic properties for the title compound were conducted using identical levels of theory. Besides, the structural state and crystal packing of the title compound were analyzed using molecular structure, Hirshfeld surfaces, interactions energies, energy frameworks and electrophilicity-based charge transfer (ECT) with DNA bases.</p>","PeriodicalId":668,"journal":{"name":"Journal of Structural Chemistry","volume":"65 8","pages":"1576 - 1594"},"PeriodicalIF":1.2,"publicationDate":"2024-09-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142222806","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}