首页 > 最新文献

Acta Crystallographica Section B-structural Science最新文献

英文 中文
Rationalizing the molecular origins of Ru- and Fe-based dyes for dye-sensitized solar cells. 染料敏化太阳能电池中钌基和铁基染料分子起源的合理化。
IF 1.9 3区 化学 Pub Date : 2012-04-01 Epub Date: 2012-03-20 DOI: 10.1107/S0108768112009263
Kian Sing Low, Jacqueline M Cole, Xiaolan Zhou, Nataliya Yufa

As part of an effort to design more efficient dyes for dye-sensitized solar cells (DSCs), structure-property relationships are established in the world's best-performing chemical series of dyes: 2,2'-bipyridyl-4,4'-carboxylatoruthenium(II) complexes. Statistical analysis, based on crystallographic data from the Cambridge Structural Database, is used to determine common structural features and the effects of structural change to its salient molecular constituents. Also included is the report of two new crystal structures for tris(2,2'-bipyridyl)dichlororuthenium(II)hexahydrate and tris(2,2'-bipyridyl)iron(II)dithiocyanate; these add to this statistical enquiry. Results show that the metal (M) core exhibits a distorted octahedral environment with M-N π-backbonding effects affording the propensity of the metal ion towards oxidation. The same characteristics are observed in iron-based analogues. The role of carboxylic groups in this series of dyes is assessed by comparing complexes which contain or are devoid of COOH groups. Space-group variation and large molecular conformational differences occur when COOH groups are present, while such structural features are very similar in their absence. The nature of the anion is also shown to influence the structure of COOH-containing complexes. These structural findings are corroborated by solution-based UV-vis absorption spectroscopy and DSC device performance tests. The presence of COOH groups in this series of compounds is shown to be mandatory for dye-uptake in TiO(2) in the DSC fabrication process. Throughout this study, results are compared with those of the world's most famous DSC dye, N3 (N719 in its fully protonated form): cis-bis(isothiocyanato)bis(2,2'-bipyridyl-4,4'-dicarboxylato)ruthenium(II). Overall, the molecular origins of charge-transfer in these complexes are ascertained. The findings have important implications to the materials discovery of more efficient dyes for DSC technology.

作为为染料敏化太阳能电池(dsc)设计更高效染料的努力的一部分,在世界上性能最好的化学染料系列:2,2'-联吡啶-4,4'-羧酸钌(II)配合物中建立了结构-性能关系。统计分析基于剑桥结构数据库的晶体学数据,用于确定共同的结构特征和结构变化对其显著分子成分的影响。此外,还报道了三(2,2′-联吡啶基)二氯钌(II)六水化合物和三(2,2′-联吡啶基)铁(II)二硫氰酸酯的两种新晶体结构;这些增加了这一统计调查。结果表明,金属(M)芯呈现出扭曲的八面体环境,M- n π-背键效应使金属离子具有氧化倾向。在铁基类似物中观察到相同的特性。羧基在这一系列染料中的作用是通过比较含有或不含羧基的配合物来评估的。当COOH基团存在时,会发生空间基团变化和较大的分子构象差异,而当COOH基团不存在时,这些结构特征非常相似。阴离子的性质也会影响含羧基配合物的结构。这些结构发现被基于溶液的紫外-可见吸收光谱和DSC器件性能测试证实。在DSC制造过程中,羧基的存在对TiO(2)的染料摄取是必需的。在整个研究中,结果与世界上最著名的DSC染料N3 (N719完全质子化形式):顺式-双(异硫氰酸酯)双(2,2'-联吡啶-4,4'-二羧酸)钌(II)进行了比较。总的来说,确定了这些复合物中电荷转移的分子起源。这些发现对DSC技术中更高效染料的材料发现具有重要意义。
{"title":"Rationalizing the molecular origins of Ru- and Fe-based dyes for dye-sensitized solar cells.","authors":"Kian Sing Low,&nbsp;Jacqueline M Cole,&nbsp;Xiaolan Zhou,&nbsp;Nataliya Yufa","doi":"10.1107/S0108768112009263","DOIUrl":"https://doi.org/10.1107/S0108768112009263","url":null,"abstract":"<p><p>As part of an effort to design more efficient dyes for dye-sensitized solar cells (DSCs), structure-property relationships are established in the world's best-performing chemical series of dyes: 2,2'-bipyridyl-4,4'-carboxylatoruthenium(II) complexes. Statistical analysis, based on crystallographic data from the Cambridge Structural Database, is used to determine common structural features and the effects of structural change to its salient molecular constituents. Also included is the report of two new crystal structures for tris(2,2'-bipyridyl)dichlororuthenium(II)hexahydrate and tris(2,2'-bipyridyl)iron(II)dithiocyanate; these add to this statistical enquiry. Results show that the metal (M) core exhibits a distorted octahedral environment with M-N π-backbonding effects affording the propensity of the metal ion towards oxidation. The same characteristics are observed in iron-based analogues. The role of carboxylic groups in this series of dyes is assessed by comparing complexes which contain or are devoid of COOH groups. Space-group variation and large molecular conformational differences occur when COOH groups are present, while such structural features are very similar in their absence. The nature of the anion is also shown to influence the structure of COOH-containing complexes. These structural findings are corroborated by solution-based UV-vis absorption spectroscopy and DSC device performance tests. The presence of COOH groups in this series of compounds is shown to be mandatory for dye-uptake in TiO(2) in the DSC fabrication process. Throughout this study, results are compared with those of the world's most famous DSC dye, N3 (N719 in its fully protonated form): cis-bis(isothiocyanato)bis(2,2'-bipyridyl-4,4'-dicarboxylato)ruthenium(II). Overall, the molecular origins of charge-transfer in these complexes are ascertained. The findings have important implications to the materials discovery of more efficient dyes for DSC technology.</p>","PeriodicalId":7107,"journal":{"name":"Acta Crystallographica Section B-structural Science","volume":"68 Pt 2","pages":"137-49"},"PeriodicalIF":1.9,"publicationDate":"2012-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1107/S0108768112009263","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"30519689","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 20
Structure of the inclusion complex of β-cyclodextrin with lipoic acid from laboratory powder diffraction data. β-环糊精-硫辛酸包合物结构的实验室粉末衍射分析。
IF 1.9 3区 化学 Pub Date : 2012-04-01 Epub Date: 2012-02-25 DOI: 10.1107/S0108768112004284
Csaba Pal Rácz, Gheorghe Borodi, Mihaela Maria Pop, Irina Kacso, Szabolcs Sánta, Maria Tomoaia-Cotisel

The crystal structure of the inclusion complex of β-cyclodextrin with lipoic acid was determined from laboratory powder diffraction data. Thermogravimetric data was used to estimate the number of water molecules in the crystal structure. Lipoic acid is included in β-cyclodextrin through its primary face with the five-membered ring reaching the center plane of the cyclodextrin cavity and its fatty acid chain adopting a bent conformation. Lipoic acid and β-cyclodextrin form a channel-like packing which is stabilized by guest-host hydrogen bonding and close contacts, host-host intermolecular interactions and hydrogen bonding involving the water molecules.

利用实验室粉末衍射数据测定了β-环糊精-硫辛酸包合物的晶体结构。用热重数据估计了晶体结构中水分子的数量。硫辛酸通过环糊精的主面进入β-环糊精,其五元环到达环糊精腔的中心平面,其脂肪酸链呈弯曲构象。硫辛酸与β-环糊精形成通道状填料,通过主-主氢键和紧密接触、主-主分子间相互作用和水分子氢键的作用稳定填料。
{"title":"Structure of the inclusion complex of β-cyclodextrin with lipoic acid from laboratory powder diffraction data.","authors":"Csaba Pal Rácz,&nbsp;Gheorghe Borodi,&nbsp;Mihaela Maria Pop,&nbsp;Irina Kacso,&nbsp;Szabolcs Sánta,&nbsp;Maria Tomoaia-Cotisel","doi":"10.1107/S0108768112004284","DOIUrl":"https://doi.org/10.1107/S0108768112004284","url":null,"abstract":"<p><p>The crystal structure of the inclusion complex of β-cyclodextrin with lipoic acid was determined from laboratory powder diffraction data. Thermogravimetric data was used to estimate the number of water molecules in the crystal structure. Lipoic acid is included in β-cyclodextrin through its primary face with the five-membered ring reaching the center plane of the cyclodextrin cavity and its fatty acid chain adopting a bent conformation. Lipoic acid and β-cyclodextrin form a channel-like packing which is stabilized by guest-host hydrogen bonding and close contacts, host-host intermolecular interactions and hydrogen bonding involving the water molecules.</p>","PeriodicalId":7107,"journal":{"name":"Acta Crystallographica Section B-structural Science","volume":"68 Pt 2","pages":"164-70"},"PeriodicalIF":1.9,"publicationDate":"2012-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1107/S0108768112004284","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"30518016","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 17
Incommensurate modulation of calcium barium niobate (CBN28 and Ce:CBN28). 铌酸钡钙(CBN28和Ce:CBN28)的不相称调制。
IF 1.9 3区 化学 Pub Date : 2012-04-01 Epub Date: 2012-02-25 DOI: 10.1107/S0108768111054863
Heribert A Graetsch, Chandra Shekhar Pandey, Jürgen Schreuer, Manfred Burianek, Manfred Mühlberg

The incommensurately modulated crystal structures of Ca(0.28)Ba(0.72)Nb(2)O(6) (CBN28) and Ce(0.02)Ca(0.25)Ba(0.72)Nb(2)O(6) (Ce:CBN28) were refined in the supercentred setting X4bm(AA0,-AA0) of the 3 + 2-dimensional superspace group P4bm(aa½,-aa½). Both compounds are isostructural with a tetragonal tungsten bronze-type structure. The modulation of CBN28 consists of a wavy distribution of Ba and Ca atoms as well as vacancies on the incompletely occupied Me2 site with 15-fold oxygen coordination. The occupational modulation is coupled with a modulation of the atomic displacement parameters and a very weak modulation of the positional parameters of Me2. The surrounding O atoms show strong displacive modulations with amplitudes up to ca 0.2 Å owing to the cooperative tilting of the rigid NbO(6) octahedra. The Me1 site with 12-fold coordination and Nb atoms are hardly affected by the modulations. Only first-order satellites were observed and the modulations are described by first-order harmonics. In Ce:CBN28 cerium appears to be located on both the Me2 and Me1 sites. Wavevectors and structural modulations are only weakly modified upon substitutional incorporation of 0.02 cerium per formula unit of calcium.

在3 + 2维超空间群P4bm(aa½,-aa½)的超中心环境X4bm(AA0,-AA0)中,细化了Ca(0.28)Ba(0.72)Nb(2)O(6) (CBN28)和Ce(0.02)Ca(0.25)Ba(0.72)Nb(2)O(6) (Ce:CBN28)的不相关调制晶体结构。这两种化合物均具有四方钨青铜型结构。CBN28的调制包括Ba和Ca原子的波状分布以及未完全占据的Me2位点上具有15倍氧配位的空位。职业调制与原子位移参数的调制和Me2的位置参数的非常弱的调制耦合在一起。由于刚性NbO(6)八面体的协同倾斜,周围的O原子表现出强烈的位移调制,振幅高达约0.2 Å。具有12倍配位的Me1位和Nb原子几乎不受调制的影响。只观测到一阶卫星,调制用一阶谐波描述。在Ce:CBN28中,铈似乎位于Me2和Me1位点上。当每单位钙的分子式中加入0.02个铈时,波长和结构调制只会发生微弱的改变。
{"title":"Incommensurate modulation of calcium barium niobate (CBN28 and Ce:CBN28).","authors":"Heribert A Graetsch,&nbsp;Chandra Shekhar Pandey,&nbsp;Jürgen Schreuer,&nbsp;Manfred Burianek,&nbsp;Manfred Mühlberg","doi":"10.1107/S0108768111054863","DOIUrl":"https://doi.org/10.1107/S0108768111054863","url":null,"abstract":"<p><p>The incommensurately modulated crystal structures of Ca(0.28)Ba(0.72)Nb(2)O(6) (CBN28) and Ce(0.02)Ca(0.25)Ba(0.72)Nb(2)O(6) (Ce:CBN28) were refined in the supercentred setting X4bm(AA0,-AA0) of the 3 + 2-dimensional superspace group P4bm(aa½,-aa½). Both compounds are isostructural with a tetragonal tungsten bronze-type structure. The modulation of CBN28 consists of a wavy distribution of Ba and Ca atoms as well as vacancies on the incompletely occupied Me2 site with 15-fold oxygen coordination. The occupational modulation is coupled with a modulation of the atomic displacement parameters and a very weak modulation of the positional parameters of Me2. The surrounding O atoms show strong displacive modulations with amplitudes up to ca 0.2 Å owing to the cooperative tilting of the rigid NbO(6) octahedra. The Me1 site with 12-fold coordination and Nb atoms are hardly affected by the modulations. Only first-order satellites were observed and the modulations are described by first-order harmonics. In Ce:CBN28 cerium appears to be located on both the Me2 and Me1 sites. Wavevectors and structural modulations are only weakly modified upon substitutional incorporation of 0.02 cerium per formula unit of calcium.</p>","PeriodicalId":7107,"journal":{"name":"Acta Crystallographica Section B-structural Science","volume":"68 Pt 2","pages":"101-6"},"PeriodicalIF":1.9,"publicationDate":"2012-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1107/S0108768111054863","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"30519684","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 18
Detailed example of the identification and crystallographic analysis of a pseudo-merohedrally twinned crystal. 伪双面孪晶的鉴定和晶体学分析的详细例子。
IF 1.9 3区 化学 Pub Date : 2012-04-01 Epub Date: 2012-03-20 DOI: 10.1107/S0108768112002728
Ilia Guzei, Regine Herbst-Irmer, Apollinaire Munyaneza, James Darkwa

A detailed description of the procedures utilized in the non-routine X-ray single-crystal structural determination and refinement of a pseudo-merohedrally twinned crystal of an Fe/Ni organometallic complex is presented. It illustrates to the practitioners of crystallography how to properly handle such cases and describes the logic and concrete steps necessary to account for the twinning, pseudo-symmetry and atomic positional disorder.

详细介绍了利用非常规x射线单晶结构测定和改进Fe/Ni有机金属配合物的伪单面孪晶的程序。它向晶体学从业者说明了如何正确处理这种情况,并描述了解释孪生、伪对称和原子位置紊乱所必需的逻辑和具体步骤。
{"title":"Detailed example of the identification and crystallographic analysis of a pseudo-merohedrally twinned crystal.","authors":"Ilia Guzei,&nbsp;Regine Herbst-Irmer,&nbsp;Apollinaire Munyaneza,&nbsp;James Darkwa","doi":"10.1107/S0108768112002728","DOIUrl":"https://doi.org/10.1107/S0108768112002728","url":null,"abstract":"<p><p>A detailed description of the procedures utilized in the non-routine X-ray single-crystal structural determination and refinement of a pseudo-merohedrally twinned crystal of an Fe/Ni organometallic complex is presented. It illustrates to the practitioners of crystallography how to properly handle such cases and describes the logic and concrete steps necessary to account for the twinning, pseudo-symmetry and atomic positional disorder.</p>","PeriodicalId":7107,"journal":{"name":"Acta Crystallographica Section B-structural Science","volume":"68 Pt 2","pages":"150-7"},"PeriodicalIF":1.9,"publicationDate":"2012-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1107/S0108768112002728","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"30518014","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 8
Symmetry analysis of the structural and magnetic phase transitions in 122 iron arsenides. 122种砷化铁结构和磁相变的对称性分析。
IF 1.9 3区 化学 Pub Date : 2012-04-01 Epub Date: 2012-03-20 DOI: 10.1107/S0108768112008294
Christopher J Howard, Michael A Carpenter

It is evident from the literature that the 122 iron arsenides, XFe(2)As(2) with X = Ca, Sr, Ba or Eu, undergo one or more phase transitions from a higher-temperature paramagnetic tetragonal structure in grey group I4/mmm1' to an antiferromagnetic structure with magnetic space group C(A)mca. Symmetry analysis is used to enumerate the possibilities for the transition (or transitions) between the higher- and lower-symmetry structures, and the results are used as a basis for comment on published experimental results.

从文献中可以明显地看出,122种砷化铁,X = Ca, Sr, Ba或Eu的XFe(2)As(2),经历了一个或多个相变,从灰色族I4/ mm1'的高温顺磁四方结构转变为磁空间族C(a)mca的反铁磁结构。对称性分析用于列举高对称性和低对称性结构之间跃迁的可能性,并将结果用作评论已发表的实验结果的基础。
{"title":"Symmetry analysis of the structural and magnetic phase transitions in 122 iron arsenides.","authors":"Christopher J Howard,&nbsp;Michael A Carpenter","doi":"10.1107/S0108768112008294","DOIUrl":"https://doi.org/10.1107/S0108768112008294","url":null,"abstract":"<p><p>It is evident from the literature that the 122 iron arsenides, XFe(2)As(2) with X = Ca, Sr, Ba or Eu, undergo one or more phase transitions from a higher-temperature paramagnetic tetragonal structure in grey group I4/mmm1' to an antiferromagnetic structure with magnetic space group C(A)mca. Symmetry analysis is used to enumerate the possibilities for the transition (or transitions) between the higher- and lower-symmetry structures, and the results are used as a basis for comment on published experimental results.</p>","PeriodicalId":7107,"journal":{"name":"Acta Crystallographica Section B-structural Science","volume":"68 Pt 2","pages":"209-12"},"PeriodicalIF":1.9,"publicationDate":"2012-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1107/S0108768112008294","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"30518021","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 8
On the structural relations of malachite. I. The rosasite and ludwigite structure families. 孔雀石的结构关系。1 .红石和路德辉石构造科。
IF 1.9 3区 化学 Pub Date : 2012-04-01 Epub Date: 2012-03-20 DOI: 10.1107/S0108768112005125
Frank Girgsdies, Malte Behrens

The crystal structures of malachite Cu(2)(OH)(2)CO(3) and rosasite (Cu,Zn)(2)(OH)(2)CO(3), though not isotypic, are closely related. A previously proposed approach explaining this relation via a common hypothetical parent structure is elaborated upon on the basis of group-subgroup considerations, leading to the conclusion that the aristotype of malachite and rosasite should crystallize in the space group Pbam (No. 55). An ICSD database search for actual representatives of this aristotype leads to the interesting observation that the structure type of ludwigite (Mg,Fe)(2)FeO(2)BO(3), which is adopted by several natural and synthetic oxide orthoborates M(3)O(2)BO(3), is closely related to the proposed malachite-rosasite aristotype and thus to the malachite-rosasite family of hydroxide carbonates M(2)(OH)(2)CO(3) in general. Relations within both structure families and their analogies are summarized in a joint simplified Bärnighausen tree.

孔雀石Cu(2)(OH)(2)CO(3)和红土(Cu,Zn)(2)(OH)(2)CO(3)的晶体结构虽然不是同型的,但却密切相关。先前提出的一种解释这种关系的方法是基于群-亚群的考虑,通过一个共同的假设母结构来阐述的,从而得出孔雀石和红石的亚里士多德型应该在pham空间群中结晶的结论(No. 55)。在ICSD数据库中搜索这种亚里士多德型的实际代表,得出了一个有趣的观察结果,即几种天然和合成的氧化正硼酸盐M(3)O(2)BO(3)采用的ludwigite (Mg,Fe)(2)FeO(2)BO(3)的结构类型与所提出的孔雀石-红褐石亚里士多德型密切相关,因此通常与氢氧碳酸盐M(2)(OH)(2)CO(3)的孔雀石-红褐石家族密切相关。两个结构族之间的关系和它们的类比在一个联合简化的Bärnighausen树中进行了总结。
{"title":"On the structural relations of malachite. I. The rosasite and ludwigite structure families.","authors":"Frank Girgsdies,&nbsp;Malte Behrens","doi":"10.1107/S0108768112005125","DOIUrl":"https://doi.org/10.1107/S0108768112005125","url":null,"abstract":"<p><p>The crystal structures of malachite Cu(2)(OH)(2)CO(3) and rosasite (Cu,Zn)(2)(OH)(2)CO(3), though not isotypic, are closely related. A previously proposed approach explaining this relation via a common hypothetical parent structure is elaborated upon on the basis of group-subgroup considerations, leading to the conclusion that the aristotype of malachite and rosasite should crystallize in the space group Pbam (No. 55). An ICSD database search for actual representatives of this aristotype leads to the interesting observation that the structure type of ludwigite (Mg,Fe)(2)FeO(2)BO(3), which is adopted by several natural and synthetic oxide orthoborates M(3)O(2)BO(3), is closely related to the proposed malachite-rosasite aristotype and thus to the malachite-rosasite family of hydroxide carbonates M(2)(OH)(2)CO(3) in general. Relations within both structure families and their analogies are summarized in a joint simplified Bärnighausen tree.</p>","PeriodicalId":7107,"journal":{"name":"Acta Crystallographica Section B-structural Science","volume":"68 Pt 2","pages":"107-17"},"PeriodicalIF":1.9,"publicationDate":"2012-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1107/S0108768112005125","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"30519685","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 14
Ab-initio crystal structure analysis and refinement approaches of oligo p-benzamides based on electron diffraction data. 基于电子衍射数据的低聚对苯酰胺从头算晶体结构分析及细化方法。
IF 1.9 3区 化学 Pub Date : 2012-04-01 Epub Date: 2012-02-25 DOI: 10.1107/S0108768112003138
Tatiana E Gorelik, Jacco van de Streek, Andreas F M Kilbinger, Gunther Brunklaus, Ute Kolb

Ab-initio crystal structure analysis of organic materials from electron diffraction data is presented. The data were collected using the automated electron diffraction tomography (ADT) technique. The structure solution and refinement route is first validated on the basis of the known crystal structure of tri-p-benzamide. The same procedure is then applied to solve the previously unknown crystal structure of tetra-p-benzamide. In the crystal structure of tetra-p-benzamide, an unusual hydrogen-bonding scheme is realised; the hydrogen-bonding scheme is, however, in perfect agreement with solid-state NMR data.

利用电子衍射数据对有机材料的晶体结构进行从头算分析。数据采用自动电子衍射层析(ADT)技术采集。在已知三对苯甲酰胺晶体结构的基础上,首次验证了结构溶液和提纯路线。然后应用相同的程序来解决以前未知的四对苯甲酰胺的晶体结构。在四对苯酰胺的晶体结构中,实现了一种不寻常的氢键方案;然而,氢键方案与固态核磁共振数据完全一致。
{"title":"Ab-initio crystal structure analysis and refinement approaches of oligo p-benzamides based on electron diffraction data.","authors":"Tatiana E Gorelik,&nbsp;Jacco van de Streek,&nbsp;Andreas F M Kilbinger,&nbsp;Gunther Brunklaus,&nbsp;Ute Kolb","doi":"10.1107/S0108768112003138","DOIUrl":"https://doi.org/10.1107/S0108768112003138","url":null,"abstract":"<p><p>Ab-initio crystal structure analysis of organic materials from electron diffraction data is presented. The data were collected using the automated electron diffraction tomography (ADT) technique. The structure solution and refinement route is first validated on the basis of the known crystal structure of tri-p-benzamide. The same procedure is then applied to solve the previously unknown crystal structure of tetra-p-benzamide. In the crystal structure of tetra-p-benzamide, an unusual hydrogen-bonding scheme is realised; the hydrogen-bonding scheme is, however, in perfect agreement with solid-state NMR data.</p>","PeriodicalId":7107,"journal":{"name":"Acta Crystallographica Section B-structural Science","volume":"68 Pt 2","pages":"171-81"},"PeriodicalIF":1.9,"publicationDate":"2012-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1107/S0108768112003138","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"30518017","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 44
On the structural integrity of the spinel block in the β"-alumina structure. β"-氧化铝结构中尖晶石块的结构完整性研究。
IF 1.9 3区 化学 Pub Date : 2012-04-01 Epub Date: 2012-02-25 DOI: 10.1107/S0108768112002649
Dunbar P Birnie

The β''-alumina structure is examined in detail and an analysis is presented of the three-dimensional integrity of the lattice. The layer structure that is responsible for the very high sodium conduction rate is the specific focus. Rigid layers that are derived from the cubic spinel structure are interleaved by more open honeycomb pathways where rapid ion diffusion takes place. The three-dimensional rigidity of the spinel block in this structure makes it possible to accurately quantify the conduction layer thickness based only on the hexagonal unit-cell dimensions, as suggested originally by Harbach [(1983), J. Mater. Sci. 18, 2437-2452]. His calculation is tested rigorously against the many single-crystal structure determinations that have been made on the β''-alumina family compounds and excellent correlation is found.

详细研究了β " -氧化铝结构,并对晶格的三维完整性进行了分析。导致高钠传导率的层结构是研究的重点。来源于立方尖晶石结构的刚性层由更开放的蜂窝通道交织而成,离子在其中快速扩散。这种结构中尖晶石块的三维刚性使得仅基于六边形单元尺寸就可以精确地量化传导层厚度,这是由Harbach [(1983), J. Mater]最初提出的。科学通报,18(4):444 - 444。他的计算与β " -氧化铝族化合物的许多单晶结构测定进行了严格的测试,发现了极好的相关性。
{"title":"On the structural integrity of the spinel block in the β\"-alumina structure.","authors":"Dunbar P Birnie","doi":"10.1107/S0108768112002649","DOIUrl":"https://doi.org/10.1107/S0108768112002649","url":null,"abstract":"<p><p>The β''-alumina structure is examined in detail and an analysis is presented of the three-dimensional integrity of the lattice. The layer structure that is responsible for the very high sodium conduction rate is the specific focus. Rigid layers that are derived from the cubic spinel structure are interleaved by more open honeycomb pathways where rapid ion diffusion takes place. The three-dimensional rigidity of the spinel block in this structure makes it possible to accurately quantify the conduction layer thickness based only on the hexagonal unit-cell dimensions, as suggested originally by Harbach [(1983), J. Mater. Sci. 18, 2437-2452]. His calculation is tested rigorously against the many single-crystal structure determinations that have been made on the β''-alumina family compounds and excellent correlation is found.</p>","PeriodicalId":7107,"journal":{"name":"Acta Crystallographica Section B-structural Science","volume":"68 Pt 2","pages":"118-22"},"PeriodicalIF":1.9,"publicationDate":"2012-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1107/S0108768112002649","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"30519686","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 19
Structures and phase transitions in a new ferroelectric -- pyridinium chlorochromate -- studied by X-ray diffraction, DSC and dielectric methods. 用x射线衍射、DSC和介电方法研究了一种新型铁电物质——氯铬酸吡啶的结构和相变。
IF 1.9 3区 化学 Pub Date : 2012-04-01 Epub Date: 2012-03-20 DOI: 10.1107/S0108768112005782
Hanna Małuszyńska, Piotr Czarnecki, Anna Czarnecka, Zdzisław Pająk

Pyridinium chlorochromate, [C(5)H(5)NH](+)[ClCrO(3)](-) (hereafter referred to as PyClCrO(3)), was studied by X-ray diffraction, differential scanning calorimetry (DSC) and dielectric methods. Studies reveal three reversible phase transitions at 346, 316 and 170 K with the following phase sequence: R ̅3m (I) → R3m (II) → Cm (III) → Cc (IV), c' = 2c. PyClCrO(3) is the first pyridinium salt in which all four phases have been successfully characterized by a single-crystal X-ray diffraction method. Structural results together with dielectric and calorimetric studies allow the classification of the two intermediate phases (II) and (III) as ferroelectric with the Curie point at 346 K, and the lowest phase (IV) as most probably ferroelectric. The ferroelectric hysteresis loop was observed only in phase (III). The high ionic conductivity hindered its observation in phase (II).

用x射线衍射、差示扫描量热法(DSC)和介电法研究了氯铬酸吡啶[C(5)H(5)NH](+)[ClCrO(3)](-)(以下简称PyClCrO(3))。研究发现,在346、316和170 K温度下,有3个可逆相变,相序为:R′3m (I)→R3m (II)→Cm (III)→Cc (IV), c′= 2c。PyClCrO(3)是第一个用单晶x射线衍射方法成功表征四相的吡啶盐。结构结果以及介电和量热研究允许将两个中间相(II)和(III)分类为居里点为346k的铁电相,而最低相(IV)最可能是铁电相。铁电磁滞回线仅在相(III)中观察到,高离子电导率阻碍了其在相(II)中的观察。
{"title":"Structures and phase transitions in a new ferroelectric -- pyridinium chlorochromate -- studied by X-ray diffraction, DSC and dielectric methods.","authors":"Hanna Małuszyńska,&nbsp;Piotr Czarnecki,&nbsp;Anna Czarnecka,&nbsp;Zdzisław Pająk","doi":"10.1107/S0108768112005782","DOIUrl":"https://doi.org/10.1107/S0108768112005782","url":null,"abstract":"<p><p>Pyridinium chlorochromate, [C(5)H(5)NH](+)[ClCrO(3)](-) (hereafter referred to as PyClCrO(3)), was studied by X-ray diffraction, differential scanning calorimetry (DSC) and dielectric methods. Studies reveal three reversible phase transitions at 346, 316 and 170 K with the following phase sequence: R ̅3m (I) → R3m (II) → Cm (III) → Cc (IV), c' = 2c. PyClCrO(3) is the first pyridinium salt in which all four phases have been successfully characterized by a single-crystal X-ray diffraction method. Structural results together with dielectric and calorimetric studies allow the classification of the two intermediate phases (II) and (III) as ferroelectric with the Curie point at 346 K, and the lowest phase (IV) as most probably ferroelectric. The ferroelectric hysteresis loop was observed only in phase (III). The high ionic conductivity hindered its observation in phase (II).</p>","PeriodicalId":7107,"journal":{"name":"Acta Crystallographica Section B-structural Science","volume":"68 Pt 2","pages":"128-36"},"PeriodicalIF":1.9,"publicationDate":"2012-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1107/S0108768112005782","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"30519688","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
Structural systematics and conformational analyses of a 3 × 3 isomer grid of fluoro-N-(pyridyl)benzamides: physicochemical correlations, polymorphism and isomorphous relationships. 氟- n -(吡啶基)苯酰胺3 × 3异构体网格的结构系统和构象分析:物理化学相关性、多态性和同构关系。
IF 1.9 3区 化学 Pub Date : 2012-04-01 Epub Date: 2012-03-20 DOI: 10.1107/S0108768112006799
Pavle Mocilac, Katie Donnelly, John F Gallagher

An isomer grid of nine fluoro-N-(pyridyl)benzamides (Fxx) (x = para-/meta-/ortho-) has been examined to correlate structural relationships between the experimental crystal structure and ab initio calculations, based on the effect of fluorine (Fx) and pyridine N-atom (x) substitution patterns on molecular conformation. Eight isomers form N-H⋅⋅⋅N hydrogen bonds, and only one (Fom) aggregates via intermolecular N-H⋅⋅⋅O=C interactions exclusively. The Fpm and Fom isomers both crystallize as two polymorphs with Fpm_O (N-H⋅⋅⋅O=C chains, P-syn) and Fpm_N (N-H⋅⋅⋅N chains, P-anti) both in P2(1)/n (Z' = 1) differing by their meta-N atom locations (P-syn, P-anti; N(pyridine) referenced to N-H), whereas the disordered Fom_O is mostly P-syn (Z' = 6) compared with Fom_F (P-anti) (Z' = 1). In the Fxo triad twisted dimers form cyclic R(2)(2)(8) rings via N-H⋅⋅⋅N interactions. Computational modelling and conformational preferences of the isomer grid demonstrate that the solid-state conformations generally conform with the most stable calculated conformations except for the Fxm triad, while calculations of the Fox triad predict the intramolecular N-H⋅⋅⋅F interaction established by spectroscopic and crystallographic data. Comparisons of Fxx with related isomer grids reveal a high degree of similarity in solid-state aggregation and physicochemical properties, while correlation of the melting point behaviour indicates the significance of the substituent position on melting point behaviour rather than the nature of the substituent.

基于氟(Fx)和吡啶n原子(x)取代模式对分子构象的影响,研究了九种氟- n -(吡啶基)苯酰胺(Fxx) (x =对-/间-/邻位-)的异构体网格,以将实验晶体结构与从头计算之间的结构关系联系起来。8个异构体形成N- h⋅⋅N氢键,只有1个异构体(form)完全通过分子间N- h⋅⋅O=C相互作用聚集。Fpm和form异构体都结晶为两种多晶型,Fpm_O (N- h⋅⋅O=C链,P-syn)和Fpm_N (N- h⋅⋅N链,P-anti)都在P2(1)/ N (Z' = 1)中,不同的是它们的元N原子位置(P-syn, P-anti;N(pyridine)参考N- h),而无序的Fom_O主要是P-syn (Z' = 6),而Fom_F (P-anti) (Z' = 1)。在Fxo中,三联体扭曲二聚体通过N- h⋅⋅N相互作用形成环状R(2)(2)(8)环。异构体网格的计算模型和构象偏好表明,固态构象一般符合除Fxm三元组外最稳定的计算构象,而Fox三元组的计算预测了通过光谱和晶体学数据建立的分子内N-H⋅⋅⋅F相互作用。Fxx与相关异构体栅格的比较揭示了固态聚集和物理化学性质的高度相似性,而熔点行为的相关性表明取代基位置对熔点行为的重要性,而不是取代基的性质。
{"title":"Structural systematics and conformational analyses of a 3 × 3 isomer grid of fluoro-N-(pyridyl)benzamides: physicochemical correlations, polymorphism and isomorphous relationships.","authors":"Pavle Mocilac,&nbsp;Katie Donnelly,&nbsp;John F Gallagher","doi":"10.1107/S0108768112006799","DOIUrl":"https://doi.org/10.1107/S0108768112006799","url":null,"abstract":"<p><p>An isomer grid of nine fluoro-N-(pyridyl)benzamides (Fxx) (x = para-/meta-/ortho-) has been examined to correlate structural relationships between the experimental crystal structure and ab initio calculations, based on the effect of fluorine (Fx) and pyridine N-atom (x) substitution patterns on molecular conformation. Eight isomers form N-H⋅⋅⋅N hydrogen bonds, and only one (Fom) aggregates via intermolecular N-H⋅⋅⋅O=C interactions exclusively. The Fpm and Fom isomers both crystallize as two polymorphs with Fpm_O (N-H⋅⋅⋅O=C chains, P-syn) and Fpm_N (N-H⋅⋅⋅N chains, P-anti) both in P2(1)/n (Z' = 1) differing by their meta-N atom locations (P-syn, P-anti; N(pyridine) referenced to N-H), whereas the disordered Fom_O is mostly P-syn (Z' = 6) compared with Fom_F (P-anti) (Z' = 1). In the Fxo triad twisted dimers form cyclic R(2)(2)(8) rings via N-H⋅⋅⋅N interactions. Computational modelling and conformational preferences of the isomer grid demonstrate that the solid-state conformations generally conform with the most stable calculated conformations except for the Fxm triad, while calculations of the Fox triad predict the intramolecular N-H⋅⋅⋅F interaction established by spectroscopic and crystallographic data. Comparisons of Fxx with related isomer grids reveal a high degree of similarity in solid-state aggregation and physicochemical properties, while correlation of the melting point behaviour indicates the significance of the substituent position on melting point behaviour rather than the nature of the substituent.</p>","PeriodicalId":7107,"journal":{"name":"Acta Crystallographica Section B-structural Science","volume":"68 Pt 2","pages":"189-203"},"PeriodicalIF":1.9,"publicationDate":"2012-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1107/S0108768112006799","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"30518019","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 31
期刊
Acta Crystallographica Section B-structural Science
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1