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Circulating long noncoding RNA GAS5 levels are correlated to prevalence of type 2 diabetes mellitus 循环长链非编码RNA GAS5水平与2型糖尿病患病率相关
Pub Date : 2015-12-01 DOI: 10.1016/j.bbacli.2015.09.001
Gay Carter , Branko Miladinovic , Achintya A. Patel , Lauren Deland , Stephen Mastorides , Niketa A. Patel

Background

Diabetes mellitus (DM), a metabolic disease, is characterized by impaired fasting glucose levels. Type 2 DM is adult onset diabetes. Long non-coding RNAs (lncRNAs) regulate gene expression and multiple studies have linked lncRNAs to human diseases.

Methods

Serum samples obtained from 96 participating veterans at JAH VA were deposited in the Research Biospecimen Repository. We used a two-stage strategy to identify an lncRNA whose levels correlated with T2DM. Initially we screened five serum samples from diabetic and non-diabetic individuals using lncRNA arrays. Next, GAS5 lncRNA levels were analyzed in 96 serum samples using quantitative PCR. Receiver operating characteristic (ROC) analysis was performed to determine the optimal cutoff GAS5 for diagnosis of DM.

Results

Our results demonstrate that decreased GAS5 levels in serum were associated with diabetes in a cohort of US military veterans. The ROC analysis revealed an optimal cutoff GAS5 value of less than or equal to 10. qPCR results indicated that individuals with absolute GAS5 < 10 ng/μl have almost twelve times higher odds of having diabetes (Exact Odds Ratio [OR] = 11.79 (95% CI: 3.97, 37.26), p < 0.001). Analysis indicated area under curve (AUC) of ROC of 0.81 with 85.1% sensitivity and 67.3% specificity in distinguishing non-diabetic from diabetic subjects. The positive predictive value is 71.4%.

Conclusion

lncRNA GAS5 levels are correlated to prevalence of T2DM.

General Significance

Assessment of GAS5 in serum along with other parameters offers greater accuracy in identifying individuals at-risk for diabetes.

背景:糖尿病(DM)是一种代谢疾病,以空腹血糖水平降低为特征。2型糖尿病是成人发病的糖尿病。长链非编码rna (lncRNAs)调节基因表达,多项研究已将lncRNAs与人类疾病联系起来。方法96例退伍军人血清标本保存于研究生物标本库。我们采用了两阶段策略来确定其水平与T2DM相关的lncRNA。最初,我们使用lncRNA阵列从糖尿病和非糖尿病个体中筛选了5个血清样本。接下来,使用定量PCR分析96份血清样本中GAS5 lncRNA的水平。受试者工作特征(ROC)分析以确定诊断糖尿病的最佳临界值。结果我们的研究结果表明,在美国退伍军人队列中,血清中GAS5水平降低与糖尿病有关。ROC分析显示最佳截断GAS5值小于或等于10。qPCR结果显示,具有绝对GAS5 <的个体;10 ng/μl的人患糖尿病的几率几乎高出12倍(确切优势比[OR] = 11.79 (95% CI: 3.97, 37.26), p <0.001)。分析表明,ROC曲线下面积(AUC)为0.81,敏感性为85.1%,特异性为67.3%。阳性预测值为71.4%。结论lncrna GAS5水平与T2DM患病率相关。评估血清中GAS5和其他参数在识别糖尿病风险个体方面提供了更高的准确性。
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引用次数: 135
Effect of caloric restriction with or without n-3 polyunsaturated fatty acids on insulin sensitivity in obese subjects: A randomized placebo controlled trial 含或不含n-3多不饱和脂肪酸的热量限制对肥胖受试者胰岛素敏感性的影响:一项随机安慰剂对照试验
Pub Date : 2015-12-01 DOI: 10.1016/j.bbacli.2015.05.001
Urszula Razny , Beata Kiec-Wilk , Anna Polus , Joanna Goralska , Malgorzata Malczewska-Malec , Dominika Wnek , Anna Zdzienicka , Anna Gruca , Caroline E. Childs , Maria Kapusta , Krystyna Slowinska-Solnica , Philip C. Calder , Aldona Dembinska-Kiec

Background

Caloric restriction and n-3 polyunsaturated fatty acid (PUFA) supplementation protect from some of the metabolic complications. The aim of this study was to assess the influence of a low calorie diet with or without n-3 PUFA supplementation on glucose dependent insulinotropic polypeptide (GIP) output and insulin sensitivity markers in obese subjects.

Methods

Obese, non-diabetic subjects (BMI 30–40 kg/m2) and aged 25–65 yr. were put on low calorie diet (1200–1500 kcal/day) supplemented with either 1.8 g/day n-3 PUFA (DHA/EPA, 5:1) (n = 24) or placebo capsules (n = 24) for three months in a randomized placebo controlled trial. Insulin resistance markers and GIP levels were analysed from samples obtained at fasting and during an oral glucose tolerance test (OGTT).

Results

Caloric restriction with n-3 PUFA led to a decrease of insulin resistance index (HOMA-IR) and a significant reduction of insulin output as well as decreased GIP secretion during the OGTT. These effects were not seen with caloric restriction alone. Changes in GIP output were inversely associated with changes in red blood cell EPA content whereas fasting GIP level positively correlated with HOMA-IR index. Blood triglyceride level was lowered by caloric restriction with a greater effect when n-3 PUFA were included and correlated positively with fasting GIP level.

Conclusions

Three months of caloric restriction with DHA + EPA supplementation exerts beneficial effects on insulin resistance, GIP and triglycerides.

General significance

Combining caloric restriction and n-3 PUFA improves insulin sensitivity, which may be related to a decrease of GIP levels.

热量限制和n-3多不饱和脂肪酸(PUFA)的补充可以防止一些代谢并发症。本研究的目的是评估低热量饮食加或不加n-3 PUFA对肥胖受试者葡萄糖依赖性胰岛素性多肽(GIP)输出和胰岛素敏感性标志物的影响。方法在随机对照试验中,25-65岁的非糖尿病受试者(BMI 30-40 kg/m2)接受低热量饮食(1200-1500 kcal/d),并添加1.8 g/d n-3 PUFA (DHA/EPA, 5:1) (n = 24)或安慰剂胶囊(n = 24),为期3个月。从空腹和口服葡萄糖耐量试验(OGTT)期间获得的样本中分析胰岛素抵抗标志物和GIP水平。结果在OGTT期间,n-3 PUFA限制热量导致胰岛素抵抗指数(HOMA-IR)下降,胰岛素输出显著减少,GIP分泌减少。这些影响并不是单独通过热量限制观察到的。GIP输出的变化与红细胞EPA含量的变化呈负相关,而空腹GIP水平与HOMA-IR指数呈正相关。热量限制降低了血液甘油三酯水平,当n-3 PUFA加入时效果更大,并且与空腹GIP水平呈正相关。结论3个月限制热量摄入并补充DHA + EPA对胰岛素抵抗、GIP和甘油三酯有有益作用。结合热量限制和n-3 PUFA可改善胰岛素敏感性,这可能与降低GIP水平有关。
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引用次数: 22
A dictionary of epidemiology — The evolution towards the 6th edition 流行病学词典-向第六版的演变
Pub Date : 2015-12-01 DOI: 10.1016/j.bbacli.2015.06.005
D. Canoy
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引用次数: 1
Folate status, folate-related genes and serum miR-21 expression: Implications for miR-21 as a biomarker 叶酸状态、叶酸相关基因和血清miR-21表达:miR-21作为生物标志物的意义
Pub Date : 2015-12-01 DOI: 10.1016/j.bbacli.2015.06.006
Emma Louise Beckett , Charlotte Martin , Jeong Hwa Choi , Katrina King , Suzanne Niblett , Lyndell Boyd , Konsta Duesing , Zoe Yates , Martin Veysey , Mark Lucock

Background

Free circulating microRNA (miRNA) in serum may be valuable biomarkers for disease diagnosis and prognosis. miR-21, the archetypal oncogenic miRNA, has been proposed as a biomarker for colorectal cancer and its benign precursor, adenomatous polyps. However, it is now becoming clear that circulating miRNA profiles may be sensitive to lifestyle and environmental influences. Dietary components involved in one-carbon metabolism are particularly well placed to modulate miRNA expression through an influence on DNA methylation pathways.

Methods

We investigated the role of methyl group donors (folate, B12, cysteine, homocysteine), polymorphisms of the enzymes of one-carbon metabolism, and serum miR-21 expression in a primary case–control cohort (colonoscopy confirmed adenomatous colon polyps vs controls; n = 253) and a secondary cross-sectional cohort (over 65s; n = 649). The relationships between these parameters and serum miR-21 levels were assessed, stratified by gender.

Conclusions

Serum miR-21 expression was related to occurrence of adenomatous polyps in females, but not males. Folate levels and MTHFR-C677T genotype was associated with miR-21 expression in both genders. Additionally, DHFR-19 del and MSR-A66G were associated with miR-21 expression in females and males, respectively. Stimulation with excess folate increased expression of miR-21 in colon cancer cell lines.

General significance

This study demonstrates that serum miR-21 expression correlates with folate status and related genetic status. This may have consequences for the proposed use of miR-21 as a colorectal cancer biomarker.

血清中游离循环microRNA (miRNA)可能是疾病诊断和预后的有价值的生物标志物。miR-21是典型的致癌miRNA,已被认为是结直肠癌及其良性前体腺瘤性息肉的生物标志物。然而,现在越来越清楚的是,循环miRNA谱可能对生活方式和环境影响敏感。参与单碳代谢的饮食成分特别适合通过影响DNA甲基化途径来调节miRNA的表达。方法我们研究了甲基供体(叶酸、B12、半胱氨酸、同型半胱氨酸)、单碳代谢酶多态性和血清miR-21表达在主要病例对照队列中的作用(结肠镜检查证实的腺瘤性结肠息肉与对照组;N = 253)和第二个横断面队列(65岁以上;n = 649)。评估这些参数与血清miR-21水平之间的关系,并按性别分层。结论血清miR-21的表达与女性腺瘤性息肉的发生有关,而与男性无关。叶酸水平和MTHFR-C677T基因型与miR-21在两性中的表达相关。此外,DHFR-19 del和MSR-A66G分别与女性和男性中miR-21的表达相关。过量叶酸刺激可增加结肠癌细胞系中miR-21的表达。本研究表明血清miR-21表达与叶酸状态及相关遗传状态相关。这可能会对miR-21作为结直肠癌生物标志物的使用产生影响。
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引用次数: 25
Simvastatin augmentation for recent-onset psychotic disorder: A study protocol 辛伐他汀增强治疗新发精神病:一项研究方案
Pub Date : 2015-12-01 DOI: 10.1016/j.bbacli.2015.06.007
Marieke J.H. Begemann , Maya J.L. Schutte , Margot I.E. Slot , Janine Doorduin , P. Roberto Bakker , Neeltje E.M. van Haren , Iris E.C. Sommer

Background

There is ample evidence that inflammatory processes play a role in the pathophysiology of schizophrenia. Randomized controlled trials have shown benefit of some (but not all) anti-inflammatory drugs on symptom severity. So far, these drugs have been given for a relatively short period. Simvastatin combines well-established vascular protection with reduction of the inflammatory status of the brain, thus offering an attractive potential to further improve treatment of schizophrenia and related disorders.

Methods/design

We are currently undertaking a double-blind placebo-controlled trial, including 250 patients (18–50 years of age) whom are diagnosed with a schizophrenia spectrum disorder. Onset of their first psychosis should be no longer than three years ago. Patients are randomized 1:1 to either 40 mg simvastatin or placebo daily during one year, next to their regular antipsychotic treatment. Primary outcome measures are symptom severity and cognitive decline as measured by the Positive and Negative Syndrome Scale (PANSS) and Brief Assessment of Cognition in Schizophrenia (BACS), at baseline and end of treatment. Secondary aims are to establish an attenuation of brain tissue loss and an improvement in general functioning, presence and severity of metabolic syndrome and degree of movement disorders. Lastly, immunological and metabolic parameters are assessed in blood samples to possibly predict treatment response.

Discussion

We hypothesize simvastatin to lower symptom severity and to prevent or reduce excessive brain tissue loss and cognitive decline, compared to placebo. We expect that simvastatin will be well-tolerated and lead to decreased prevalence of metabolic syndrome.

Trial registration

ClinicalTrails.gov NCT01999309; EudraCT-number 2013-000834-36.

有充分的证据表明,炎症过程在精神分裂症的病理生理中起作用。随机对照试验表明,一些(但不是全部)抗炎药物对症状严重程度有好处。到目前为止,这些药物的使用时间相对较短。辛伐他汀结合了良好的血管保护和减少大脑炎症状态,因此为进一步改善精神分裂症和相关疾病的治疗提供了有吸引力的潜力。方法/设计我们目前正在进行一项双盲安慰剂对照试验,包括250名被诊断为精神分裂症谱系障碍的患者(18-50岁)。首次出现精神病的时间不应超过3年。在一年的时间里,患者在常规抗精神病药物治疗的基础上,每天以1:1的比例随机分配40mg辛伐他汀或安慰剂。主要结局指标是在基线和治疗结束时,通过阳性和阴性综合征量表(PANSS)和精神分裂症简短认知评估(BACS)测量的症状严重程度和认知能力下降。次要目标是确定脑组织损失的衰减和一般功能的改善,代谢综合征的存在和严重程度以及运动障碍的程度。最后,在血液样本中评估免疫和代谢参数,以可能预测治疗反应。与安慰剂相比,我们假设辛伐他汀可以降低症状严重程度,防止或减少过度的脑组织损失和认知能力下降。我们期望辛伐他汀具有良好的耐受性,并降低代谢综合征的患病率。临床试验注册:clinicaltrails .gov NCT01999309;EudraCT-number 2013-000834-36。
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引用次数: 20
Knowledge of carbohydrate counting and insulin dose calculations in paediatric patients with type 1 diabetes mellitus 儿科1型糖尿病患者的碳水化合物计数和胰岛素剂量计算知识
Pub Date : 2015-12-01 DOI: 10.1016/j.bbacli.2015.09.002
Natalie Finner , Anne Quinn , Anna Donovan , Orla O'Leary , Clodagh S. O'Gorman

Background

Patients with type 1 diabetes mellitus (T1DM) who are able to adjust their insulin doses according to the carbohydrate content of a meal, as well as their blood glucose, are likely to have improved glycaemic control (Silverstein et al., 2005). With improved glycaemic control, patients have a lower risk of developing long-term microvascular complications associated with T1DM (Diabetes Control and Complications Trial Research Group, 1993).

To assess the carbohydrate and insulin knowledge of patients attending our paediatric diabetes clinic at the University Hospital Limerick (UHL), the validated PedCarbQuiz (PCQ) was applied to our clinic population.

Methods

This study was completed by applying a questionnaire called the PedCarbQuiz (PCQ) to children exclusively attending our paediatric diabetes clinic at UHL. Of the clinic's 220 patients, 81 participated in the study.

Results

The average total PCQ score (%) was higher in the continuous subcutaneous insulin infusion (CSII) group compared with the multiple daily insulin (MDI) injection user group (79.1 ± 12.1 versus 65.9 ± 6.6 p = 0.005). The CSII group also had a higher average carbohydrate score (%) compared with the MDI group (79.4 ± 12.4 versus 66.3 ± 16.2, p = 0.004).

Conclusions

This study demonstrates that in a representative Irish regional paediatric T1DM clinic, knowledge of carbohydrates and insulin is better among patients treated with CSII compared with MDI. However, knowledge in both groups is poorer than in the original US sample.

General significance

This study demonstrates that in a representative Irish regional paediatric T1DM clinic, knowledge of carbohydrates and insulin is poorer than in a US based sample, although this knowledge is better among patients treated with CSII compared with MDI. This highlights the need for improved resources for diabetes and carbohydrate counting education for patients with T1DM.

背景:1型糖尿病(T1DM)患者如果能够根据膳食中碳水化合物的含量以及他们的血糖来调整胰岛素的剂量,那么他们的血糖控制可能会得到改善(Silverstein et al., 2005)。随着血糖控制的改善,患者发生与T1DM相关的长期微血管并发症的风险降低(糖尿病控制和并发症试验研究小组,1993)。为了评估在利默里克大学医院(UHL)儿科糖尿病门诊就诊的患者的碳水化合物和胰岛素知识,我们对门诊人群应用了经过验证的PedCarbQuiz (PCQ)。方法:本研究采用一份名为PedCarbQuiz (PCQ)的问卷,对在UHL儿科糖尿病诊所就诊的儿童进行调查。在诊所的220名患者中,有81人参加了这项研究。结果连续皮下胰岛素输注组(CSII)的平均总PCQ评分(%)高于每日多次胰岛素(MDI)注射组(79.1±12.1比65.9±6.6 p = 0.005)。CSII组的平均碳水化合物评分(%)也高于MDI组(79.4±12.4比66.3±16.2,p = 0.004)。结论本研究表明,在具有代表性的爱尔兰地区儿科T1DM诊所中,与MDI相比,CSII治疗的患者对碳水化合物和胰岛素的了解更好。然而,这两组人的知识都比最初的美国样本少。本研究表明,在具有代表性的爱尔兰地区儿科T1DM诊所中,碳水化合物和胰岛素的知识比美国样本要差,尽管与MDI相比,CSII治疗的患者对这方面的知识更好。这突出了改善T1DM患者的糖尿病资源和碳水化合物计数教育的必要性。
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引用次数: 12
Preoperative protein profiles in cerebrospinal fluid in elderly hip fracture patients at risk for delirium: A proteomics and validation study 老年髋部骨折患者谵妄风险的术前脑脊液蛋白谱:蛋白质组学和验证研究
Pub Date : 2015-12-01 DOI: 10.1016/j.bbacli.2015.10.002
Dunja Westhoff , Joost Witlox , Corneli van Aalst , Rikie M. Scholtens , Sophia E. de Rooij , Barbara C. van Munster , Jos F.M. de Jonghe , Alexander P.J. Houdijk , Piet Eikelenboom , David J. van Westerloo , Diederik van de Beek , Willem A. van Gool , Leo Koenderman

Background

A neuroinflammatory response is suggested to play an important role in delirium, a common complication in older hospitalized patients. We examined whether hip fracture patients who develop postoperative delirium have a different proteome in cerebrospinal fluid (CSF) prior to surgery.

Methods

Patients (≥ 75 years) were admitted for hip fracture surgery. CSF was collected during spinal anaesthesia; proteins were separated using gel electrophoresis and identified with mass spectrometry. We compared the proteome of patients with and without postoperative delirium. Findings were validated in an independent, comparable cohort using immuno-assays.

Results

In the derivation cohort 53 patients were included, 35.8% developed postoperative delirium. We identified differences in levels of eight CSF proteins between patients with and without subsequent delirium: complement factor C3, contactin-1, fibulin-1 and I-beta-1,3-N-acetylglucosaminyltransferase were significantly lower in patients with postoperative delirium, while neural cell adhesion molecule-2, fibrinogen, zinc-α-2-glycoprotein and haptoglobin levels were significantly higher. In the validation cohort 21.2% of 52 patients developed postoperative delirium. Immuno-assays confirmed contactin-1 results although not statistically significant. Complement factor C3 was significantly higher in patients with postoperative delirium.

Conclusion

Our results show the complexity of pathophysiological mechanisms involved in delirium and emphasizes the need of independent validation of findings.

General significance

This study highlights the challenges and inconsistent findings in studies of delirium, a serious complication in older patients. We analysed proteins in CSF, the most proximal fluid to the brain. All patients were free from delirium at the time of sampling.

背景神经炎症反应被认为在谵妄中起重要作用,谵妄是老年住院患者的常见并发症。我们研究了髋部骨折患者术后谵妄是否在手术前脑脊液(CSF)中有不同的蛋白质组。方法收治髋部骨折手术患者(年龄≥75岁)。脊髓麻醉时采集脑脊液;凝胶电泳法分离蛋白质,质谱法鉴定蛋白质。我们比较了术后谵妄患者和非术后谵妄患者的蛋白质组。研究结果在一项独立的、可比较的免疫测定队列中得到验证。结果本组53例患者术后出现谵妄,占35.8%。我们发现8种脑脊液蛋白水平在谵妄患者和非谵妄患者之间存在差异:术后谵妄患者补体因子C3、接触蛋白-1、纤维蛋白-1和i - β -1,3- n-乙酰氨基葡萄糖转移酶水平显著降低,而神经细胞粘附分子-2、纤维蛋白原、锌-α-2糖蛋白和触珠蛋白水平显著升高。在验证队列中,52例患者中21.2%出现术后谵妄。免疫试验证实了接触-1的结果,但没有统计学意义。补体因子C3在术后谵妄患者中明显升高。结论我们的研究结果显示谵妄的病理生理机制的复杂性,并强调需要对研究结果进行独立验证。本研究强调了谵妄研究的挑战和不一致的发现,谵妄是老年患者的严重并发症。我们分析了脑脊液中的蛋白质,脑脊液是离大脑最近的液体。所有患者取样时均无谵妄。
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引用次数: 16
Glutaredoxin mediated redox effects of coenzyme Q10 treatment in type 1 and type 2 diabetes patients 谷氨酰胺还蛋白介导的辅酶Q10治疗1型和2型糖尿病患者的氧化还原作用
Pub Date : 2015-12-01 DOI: 10.1016/j.bbacli.2015.06.001
Sergio J. Montano , Jacob Grünler , Deepika Nair , Michael Tekle , Aristi P. Fernandes , Xiang Hua , Arne Holmgren , Kerstin Brismar , Johanna S. Ungerstedt

The possible beneficial effects of coenzyme Q10 (CoQ10) supplementation on disease progression and oxidant status in diabetes remains debated. In the present study, patients with type 1 and type 2 diabetes were treated with oral CoQ10, 100 mg twice daily for 12 weeks. We assessed total antioxidant capacity, intra- and extracellular levels of the redox regulating protein glutaredoxin 1 (Grx1), CoQ10, oxidized LDL-cholesterol, lipid profile and HbA1c. We have previously shown that extracellular Grx1 is increased in patients with type 2 diabetes compared to healthy subjects. In the present study, CoQ10 treatment significantly decreased serum Grx1 activity as well as total antioxidant capacity independent of type of diabetes, indicating an improvement to a less oxidized extracellular environment. The effect on serum Grx1 activity was more prominent in patients not on statin treatment. Conversely, intracellular Grx1 activity as well as mRNA levels increased independent of statin treatment. There was a significant improvement in oxidized LDL-cholesterol and lipid profile, with a tendency to improved metabolic control (HbA1c). Additionally, we describe for the first time that CoQ10 is a direct substrate for glutathione, and that Grx1 catalyzes this reaction, thus presenting a novel mechanism for CoQ10 reduction which could explain our findings of an increased intracellular Grx1. In conclusion, 12 weeks CoQ10 treatment significantly improved the extracellular redox balance and lipid profile, indicating that prolonged treatment may have beneficial effects also on clinical outcome in diabetes.

补充辅酶Q10 (CoQ10)对糖尿病患者疾病进展和氧化状态的可能有益作用仍存在争议。在本研究中,1型和2型糖尿病患者口服辅酶q10, 100mg,每日两次,持续12周。我们评估了总抗氧化能力、氧化还原调节蛋白glutaredoxin 1 (Grx1)、CoQ10、氧化ldl -胆固醇、血脂和HbA1c的细胞内和细胞外水平。我们之前的研究表明,与健康受试者相比,2型糖尿病患者的细胞外Grx1增加。在本研究中,CoQ10治疗显著降低了血清Grx1活性以及与糖尿病类型无关的总抗氧化能力,表明改善了氧化程度较低的细胞外环境。对血清Grx1活性的影响在未接受他汀类药物治疗的患者中更为突出。相反,细胞内Grx1活性和mRNA水平的增加与他汀类药物治疗无关。氧化低密度脂蛋白胆固醇和脂质谱有显著改善,代谢控制(HbA1c)有改善的趋势。此外,我们首次描述了CoQ10是谷胱甘肽的直接底物,而Grx1催化了这一反应,从而提出了CoQ10还原的新机制,这可以解释我们发现的细胞内Grx1增加。总之,12周的辅酶q10治疗显著改善了细胞外氧化还原平衡和脂质谱,表明延长治疗可能对糖尿病的临床结果也有有益的影响。
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引用次数: 24
Onco-proteogenomics identifies urinary S100A9 and GRN as potential combinatorial biomarkers for early diagnosis of hepatocellular carcinoma 肿瘤蛋白基因组学鉴定尿液S100A9和GRN是早期诊断肝细胞癌的潜在组合生物标志物
Pub Date : 2015-06-01 DOI: 10.1016/j.bbacli.2015.02.004
Chun-Hao Huang , Chao-Jen Kuo , Shih-Shin Liang , Shu-Wen Chi , Edward Hsi , Chi-Chao Chen , King-Teh Lee , Shyh-Horng Chiou

Hepatocellular carcinoma (HCC), the major type of liver cancer, is among the most lethal cancers owing to its aggressive nature and frequently late detection. Therefore, the possibility to identify early diagnostic markers could be of significant benefit. Urine has especially become one of the most attractive body fluids in biomarker discovery as it can be obtained non-invasively in large quantities and is stable as compared with other body fluids. To identify potential protein biomarker for early diagnosis of HCC, we explored protein expression profiles in urine from HCC patients and normal controls (n = 44) by shotgun proteomics using nano-liquid chromatography coupled tandem mass spectrometry (nanoLC–MS/MS) and stable isotope dimethyl labeling. We have systematically mapped 91 proteins with differential expressions (p < 0.05), which included 8 down-regulated microtubule proteins and 83 up-regulated proteins involved in signal and inflammation response. Further integrated proteogenomic approach composed of proteomic, genomic and transcriptomic analysis identified that S100A9 and GRN were co-amplified (p < 0.001) and co-expressed (p < 0.01) in HCC tumors and urine samples. In addition, the amplifications of S100A9 or GRN were found to be associated with poor survival in HCC patients, and their co-amplification was also prognosed worse overall survival than individual ones. Our results suggest that urinary S100A9 and GRN as potential combinatorial biomarkers can be applied to early diagnosis of hepatocellular carcinoma and highlight the utility of onco-proteogenomics for identifying protein markers that can be applied to disease-oriented translational medicine.

肝细胞癌(HCC)是肝癌的主要类型,由于其侵袭性和经常发现较晚,是最致命的癌症之一。因此,识别早期诊断标记物的可能性可能会带来重大益处。尿液尤其成为生物标志物发现中最具吸引力的体液之一,因为它可以大量非侵入性地获得,并且与其他体液相比具有稳定性。为了确定HCC早期诊断的潜在蛋白质生物标志物,我们利用纳米液相色谱-串联质谱(nanoLC-MS /MS)和稳定同位素二甲基标记,通过鸟枪蛋白质组学研究了HCC患者和正常对照(n = 44)尿液中的蛋白质表达谱。我们系统地绘制了91种差异表达蛋白(p <0.05),包括8个下调的微管蛋白和83个上调的微管蛋白参与信号和炎症反应。通过蛋白质组学、基因组学和转录组学分析进一步整合蛋白质基因组学方法,发现S100A9和GRN共扩增(p <0.001)和共表达(p <0.01)。此外,我们还发现S100A9或GRN的扩增与HCC患者的低生存率相关,并且它们的共同扩增也比单个扩增的预后总生存率差。我们的研究结果表明,尿液S100A9和GRN作为潜在的组合生物标志物可以应用于肝细胞癌的早期诊断,并突出了肿瘤蛋白质基因组学在鉴定蛋白质标志物方面的应用,这些蛋白质标志物可以应用于疾病导向的转化医学。
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引用次数: 32
Anthropometric features and myocardial infarction in very elderly people 老年人的人体测量特征与心肌梗死
Pub Date : 2015-06-01 DOI: 10.1016/j.bbacli.2015.05.008
Alessandra M. Campos, Meyrianne Almeida, Valeria N. Figueiredo, Wladimir M. Freitas, Andrei C. Sposito
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引用次数: 0
期刊
BBA clinical
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