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Transcriptomics and Epigenomics in head and neck cancer: available repositories and molecular signatures. 头颈癌的转录组学和表观基因组学:可用的知识库和分子特征。
Pub Date : 2020-01-21 eCollection Date: 2020-01-01 DOI: 10.1186/s41199-020-0047-y
Mara S Serafini, Laura Lopez-Perez, Giuseppe Fico, Lisa Licitra, Loris De Cecco, Carlo Resteghini

For many years, head and neck squamous cell carcinoma (HNSCC) has been considered as a single entity. However, in the last decades HNSCC complexity and heterogeneity have been recognized. In parallel, high-throughput omics techniques had allowed picturing a larger spectrum of the behavior and characteristics of molecules in cancer and a large set of omics web-based tools and informative repository databases have been developed. The objective of the present review is to provide an overview on biological, prognostic and predictive molecular signatures in HNSCC. To contextualize the selected data, our literature survey includes a short summary of the main characteristics of omics data repositories and web-tools for data analyses. The timeframe of our analysis was fixed, encompassing papers published between January 2015 and January 2019. From more than 1000 papers evaluated, 61 omics studies were selected: 33 investigating mRNA signatures, 11 and 13 related to miRNA and other non-coding-RNA signatures and 4 analyzing DNA methylation signatures. More than half of identified signatures (36) had a prognostic value but only in 10 studies selection of a specific anatomical sub-site (8 oral cavity, 1 oropharynx and 1 both oral cavity and oropharynx) was performed. Noteworthy, although the sample size included in many studies was limited, about one-half of the retrieved studies reported an external validation on independent dataset(s), strengthening the relevance of the obtained data. Finally, we highlighted the development and exploitation of three gene-expression signatures, whose clinical impact on prognosis/prediction of treatment response could be high. Based on this overview on omics-related literature in HNSCC, we identified some limits and strengths. The major limits are represented by the low number of signatures associated to DNA methylation and to non-coding RNA (miRNA, lncRNA and piRNAs) and the availability of a single dataset with multiple omics on more than 500 HNSCC (i.e. TCGA). The major strengths rely on the integration of multiple datasets through meta-analysis approaches and on the growing integration among omics data obtained on the same cohort of patients. Moreover, new approaches based on artificial intelligence and informatic analyses are expected to be available in the next future.

多年来,头颈部鳞状细胞癌(HNSCC)一直被认为是一个单一的实体。然而,在过去的几十年里,HNSCC的复杂性和异质性已经得到了认识。与此同时,高通量组学技术可以描绘更大范围的癌症分子的行为和特征,并且已经开发了大量基于网络的组学工具和信息库数据库。本综述的目的是对HNSCC的生物学、预后和预测分子特征进行综述。为了将所选数据上下文化,我们的文献调查包括对组学数据存储库和用于数据分析的网络工具的主要特征的简短总结。我们分析的时间框架是固定的,包括2015年1月至2019年1月之间发表的论文。从评估的1000多篇论文中,选择了61篇组学研究:33篇研究mRNA特征,11篇和13篇与miRNA和其他非编码rna特征相关,4篇分析DNA甲基化特征。超过一半的识别特征(36个)具有预后价值,但只有10个研究选择了特定的解剖亚部位(8个口腔,1个口咽和1个口腔和口咽)。值得注意的是,尽管许多研究纳入的样本量有限,但约有一半的检索研究报告了独立数据集的外部验证,加强了所获得数据的相关性。最后,我们强调了三个基因表达特征的开发和利用,它们对预后/治疗反应预测的临床影响可能很高。基于对HNSCC组学相关文献的概述,我们确定了一些局限性和优势。主要的限制是与DNA甲基化和非编码RNA (miRNA, lncRNA和pirna)相关的签名数量较少,以及在500多个HNSCC(即TCGA)上具有多个组学的单个数据集的可用性。主要优势依赖于通过荟萃分析方法整合多个数据集,以及在同一队列患者中获得的组学数据之间的日益整合。此外,基于人工智能和信息分析的新方法有望在未来出现。
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引用次数: 23
Adaptive radiotherapy for head and neck cancer. 头颈癌的适应性放疗。
Pub Date : 2020-01-09 eCollection Date: 2020-01-01 DOI: 10.1186/s41199-019-0046-z
Howard E Morgan, David J Sher

Background: Although there have been dramatic improvements in radiotherapy for head and neck squamous cell carcinoma (HNSCC), including robust intensity modulation and daily image guidance, these advances are not able to account for inherent structural and spatial changes that may occur during treatment. Many sources have reported volume reductions in the primary target, nodal volumes, and parotid glands over treatment, which may result in unintended dosimetric changes affecting the side effect profile and even efficacy of the treatment. Adaptive radiotherapy (ART) is an exciting treatment paradigm that has been developed to directly adjust for these changes.

Main body: Adaptive radiotherapy may be divided into two categories: anatomy-adapted (A-ART) and response-adapted ART (R-ART). Anatomy-adapted ART is the process of re-planning patients based on structural and spatial changes occurring over treatment, with the intent of reducing overdosage of sensitive structures such as the parotids, improving dose homogeneity, and preserving coverage of the target. In contrast, response-adapted ART is the process of re-planning patients based on response to treatment, such that the target and/or dose changes as a function of interim imaging during treatment, with the intent of dose escalating persistent disease and/or de-escalating surrounding normal tissue. The impact of R-ART on local control and toxicity outcomes is actively being investigated in several currently accruing trials.

Conclusions: Anatomy-adapted ART is a promising modality to improve rates of xerostomia and coverage in individuals who experience significant volumetric changes during radiation, while R-ART is currently being studied to assess its utility in either dose escalation of radioresistant disease, or de-intensification of surrounding normal tissue following treatment response. In this paper, we will review the existing literature and recent advances regarding A-ART and R-ART.

背景:尽管头颈部鳞状细胞癌(HNSCC)的放疗有了显著的改善,包括强大的强度调节和日常图像引导,但这些进展并不能解释治疗过程中可能发生的固有结构和空间变化。许多来源报道了治疗过程中主要靶点、淋巴结体积和腮腺体积的减少,这可能导致意想不到的剂量变化,影响副作用甚至治疗效果。适应性放射治疗(ART)是一种令人兴奋的治疗模式,已经发展到直接调整这些变化。正文:适应性放疗可分为解剖适应性放疗(A-ART)和反应适应性放疗(R-ART)两类。解剖适应ART是基于治疗过程中发生的结构和空间变化对患者进行重新规划的过程,目的是减少敏感结构(如腮腺)的过量剂量,改善剂量均匀性,并保持靶区覆盖。相反,适应反应的抗逆转录病毒治疗是根据对治疗的反应对患者进行重新规划的过程,这样治疗过程中靶标和/或剂量就会随着治疗期间的中期影像学变化而改变,目的是使持续性疾病的剂量升高和/或周围正常组织的剂量降低。目前正在进行的几项试验正在积极调查抗逆转录病毒治疗对局部控制和毒性结果的影响。结论:适应解剖结构的ART是一种很有前景的方式,可以提高在放疗期间经历显著体积变化的个体的口干率和覆盖率,而R-ART目前正在研究中,以评估其在放射耐药疾病剂量增加或治疗反应后周围正常组织去强化中的效用。在本文中,我们将回顾有关A-ART和R-ART的现有文献和最新进展。
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引用次数: 65
Genomic and human papillomavirus profiling of an oral cancer cohort identifies TP53 as a predictor of overall survival. 口腔癌队列的基因组和人乳头瘤病毒分析确定TP53是总生存的预测因子。
Pub Date : 2019-12-05 eCollection Date: 2019-01-01 DOI: 10.1186/s41199-019-0045-0
Neil Mundi, Stephenie D Prokopec, Farhad Ghasemi, Andrew Warner, Krupal Patel, Danielle MacNeil, Christopher Howlett, William Stecho, Paul Plantinga, Nicole Pinto, Kara M Ruicci, Mohammed Imran Khan, Myung Woul Han, John Yoo, Kevin Fung, Axel Sahovaler, David A Palma, Eric Winquist, Joe S Mymryk, John W Barrett, Paul C Boutros, Anthony C Nichols

Background: The genomic landscape of head and neck cancer has been reported through The Cancer Genome Atlas project. We attempt to determine if high-risk human papillomavirus (HPV) or frequently mutated genes are correlated with survival in an oral cancer cohort.

Methods: Patient demographic data along with data from final pathology was collected. Tumor DNA was analyzed using a custom Illumina targeted sequencing panel. Five high-risk HPV types were tested by qPCR. Statistical analyses were used to identify associations between patient outcome and mutational status.

Results: High-risk HPV types were identified in 7% of cases; HPV status was not associated with survival. Mutations were identified in TP53, TERT promoter, & PIK3CA. Mutations in TP53 were significantly associated with poorer overall survival on multi-variate analysis (p = 0.03).

Conclusions: Mutations in TP53 were associated with poor patient survival. Expanding our sample size may identify further predictors of outcome to direct customized cancer care.

背景:通过癌症基因组图谱计划已经报道了头颈癌的基因组图谱。我们试图确定高危人乳头瘤病毒(HPV)或频繁突变基因是否与口腔癌队列中的生存相关。方法:收集患者人口学资料及最终病理资料。使用定制的Illumina靶向测序板分析肿瘤DNA。采用qPCR检测5种高危型HPV。统计分析用于确定患者预后与突变状态之间的关联。结果:高危型HPV占7%;HPV状态与生存无关。在TP53、TERT启动子和PIK3CA中发现了突变。多变量分析显示,TP53突变与较差的总生存率显著相关(p = 0.03)。结论:TP53突变与较差的患者生存有关。扩大我们的样本量可以确定进一步的预测结果,以直接定制癌症治疗。
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引用次数: 11
The role of salvage surgery with interstitial brachytherapy for the Management of Regionally Recurrent Head and Neck Cancers 挽救性手术配合间质近距离放射治疗在局部复发性头颈部肿瘤中的作用
Pub Date : 2019-07-22 DOI: 10.1186/s41199-019-0043-2
N. Khan, M. Clemens, Jun Liu, A. Garden, A. Lawyer, R. Weber, G. Gunn, W. Morrison, M. Kupferman
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引用次数: 9
NSD1 mutations by HPV status in head and neck cancer: differences in survival and response to DNA-damaging agents 头颈癌中HPV状态的NSD1突变:生存和对dna损伤剂反应的差异
Pub Date : 2019-07-08 DOI: 10.1186/s41199-019-0042-3
Cassie Pan, Said Izreig, W. Yarbrough, N. Issaeva
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引用次数: 19
Comparing cisplatin-Chemoradiotherapy to Cetuximab-radiotherapy in HPV+ "low-risk" locally advanced oropharyngeal squamous cell carcinoma: lessons from De-escalate study. 顺铂-放化疗与西妥昔单抗-放疗治疗HPV+“低风险”局部晚期口咽鳞状细胞癌的比较:来自降级研究的教训
Pub Date : 2019-03-12 eCollection Date: 2019-01-01 DOI: 10.1186/s41199-019-0040-5
Panagiota Economopoulou, Amanda Psyrri

Background: Human papillomavirus-associated oropharyngeal cancer (HPV-OSCC) is rapidly increasing in incidence and has unique epidemiologic, molecular, and biologic characteristics. Standard combined modality therapies for head and neck cancer confer a significant risk of morbidity. However, patients with HPV-OSCC are diagnosed at a younger age and have a superior prognosis; this spurs the development of treatment deintensification trials that attempt to decrease treatment-related morbidity without compromising efficacy.

Main body: The De-Escalate-HPV is a randomized phase 3 study that compares the standard treatment, radiation and cisplatin, with radiation and epidermal growth factor receptor (EGFR) inhibitor cetuximab in patients with low-risk HPV-OSCC.

Conclusion: In this commentary, we aim to discuss the results of the De-Escalate-HPV study.

背景:人乳头瘤病毒相关口咽癌(HPV-OSCC)发病率迅速上升,具有独特的流行病学、分子和生物学特征。头颈癌的标准联合治疗具有显著的发病率风险。然而,HPV-OSCC患者在较年轻时被诊断出来,预后较好;这刺激了治疗去强化试验的发展,这些试验试图在不影响疗效的情况下降低治疗相关的发病率。主体:De-Escalate-HPV是一项随机3期研究,比较了低风险HPV-OSCC患者的标准治疗、放疗和顺铂,以及放疗和表皮生长因子受体(EGFR)抑制剂西妥昔单抗。结论:在这篇评论中,我们的目的是讨论降级hpv研究的结果。
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引用次数: 0
Interventions to improve quality of life (QOL) and/or mood in patients with head and neck cancer (HNC): a review of the evidence. 改善头颈癌(HNC)患者生活质量和/或情绪的干预措施:证据综述
Pub Date : 2019-01-01 DOI: 10.1186/s41199-019-0041-4
Jordan J Senchak, Carolyn Y Fang, Jessica R Bauman

Background: Patients with head and neck cancer (HNC) experience significant physical and psychological distress, which have a negative impact on their quality of life (QOL). Few strategies have been studied to help improve QOL in this patient population.

Results: In this article, we review the existing literature for intervention studies that focus on improving QOL and/or mood in HNC patients. Our review yielded 14 studies that met criteria. Types of interventions included educational, psychosocial, physical and psychological symptom management, mindfulness, pharmacologic, exercise, and telemedicine. Although the majority of the studies had small sample sizes or other methodological limitations, many showed preliminary feasibility and acceptability with some positive impacts on QOL and/or mood.

Conclusions: Larger studies are warranted with more robust randomized designs to determine efficacy of interventions to improve QOL and/or mood in patients with HNC. Additionally, future studies must also consider strategies for implementation and dissemination of these interventions into the health care system to improve the physical and psychological burden of HNC as a population.

背景:头颈癌(HNC)患者经历了显著的生理和心理困扰,这对他们的生活质量(QOL)产生了负面影响。很少有策略被研究来帮助改善这一患者群体的生活质量。结果:在这篇文章中,我们回顾了现有的关于改善HNC患者生活质量和/或情绪的干预研究的文献。我们的综述得出了14项符合标准的研究。干预措施的类型包括教育、社会心理、生理和心理症状管理、正念、药物、运动和远程医疗。虽然大多数研究样本量小或有其他方法上的限制,但许多研究显示出初步的可行性和可接受性,对生活质量和/或情绪有一些积极的影响。结论:需要更大规模的研究和更可靠的随机设计来确定干预措施改善HNC患者生活质量和/或情绪的有效性。此外,未来的研究还必须考虑在卫生保健系统中实施和传播这些干预措施的策略,以改善HNC人群的生理和心理负担。
{"title":"Interventions to improve quality of life (QOL) and/or mood in patients with head and neck cancer (HNC): a review of the evidence.","authors":"Jordan J Senchak,&nbsp;Carolyn Y Fang,&nbsp;Jessica R Bauman","doi":"10.1186/s41199-019-0041-4","DOIUrl":"https://doi.org/10.1186/s41199-019-0041-4","url":null,"abstract":"<p><strong>Background: </strong>Patients with head and neck cancer (HNC) experience significant physical and psychological distress, which have a negative impact on their quality of life (QOL). Few strategies have been studied to help improve QOL in this patient population.</p><p><strong>Results: </strong>In this article, we review the existing literature for intervention studies that focus on improving QOL and/or mood in HNC patients. Our review yielded 14 studies that met criteria. Types of interventions included educational, psychosocial, physical and psychological symptom management, mindfulness, pharmacologic, exercise, and telemedicine. Although the majority of the studies had small sample sizes or other methodological limitations, many showed preliminary feasibility and acceptability with some positive impacts on QOL and/or mood.</p><p><strong>Conclusions: </strong>Larger studies are warranted with more robust randomized designs to determine efficacy of interventions to improve QOL and/or mood in patients with HNC. Additionally, future studies must also consider strategies for implementation and dissemination of these interventions into the health care system to improve the physical and psychological burden of HNC as a population.</p>","PeriodicalId":72518,"journal":{"name":"Cancers of the head & neck","volume":"4 ","pages":"2"},"PeriodicalIF":0.0,"publicationDate":"2019-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s41199-019-0041-4","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10050988","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 29
HPV-driven oropharyngeal cancer: current knowledge of molecular biology and mechanisms of carcinogenesis. hpv驱动口咽癌:分子生物学和致癌机制的最新知识。
Pub Date : 2018-12-29 eCollection Date: 2018-01-01 DOI: 10.1186/s41199-018-0039-3
Cassie Pan, Natalia Issaeva, Wendell G Yarbrough

Understanding of oropharyngeal squamous cell carcinoma has significantly progressed over the last decades, and the concept that this disease can be subdivided into two distinct entities based on human papilloma virus (HPV) status has gained acceptance. To combat the constantly growing epidemic of HPV+ oropharyngeal cancer, further investigation and characterization the unique features of the disease, along with the development and implementation of new, targeted therapies, is crucial. In this review, we summarize the etiology, pathogenesis, diagnosis, treatment, and molecular characteristics of HPV-associated oropharyngeal squamous cell carcinoma.

在过去的几十年里,对口咽鳞状细胞癌的了解有了显著的进展,这种疾病可以根据人乳头状瘤病毒(HPV)状态细分为两个不同的实体的概念已被接受。为了应对不断增长的HPV+口咽癌流行,进一步调查和描述该疾病的独特特征,以及开发和实施新的靶向治疗方法至关重要。本文就hpv相关口咽鳞状细胞癌的病因、发病机制、诊断、治疗及分子特征进行综述。
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引用次数: 80
Time abides long enough for those who make use of it. 对于那些利用时间的人来说,时间是足够长的。
Pub Date : 2018-12-19 eCollection Date: 2018-01-01 DOI: 10.1186/s41199-018-0038-4
Muhammad M Fareed, Thomas J Galloway

Increased treatment package time is an independent poor prognostic factor for outcomes in head and neck squamous cell carcinoma (HNSCC). Similarly the timeliness of treatment initiation is a risk factor for disease recurrence. Despite these well-known issues, the timeliness of treatment initiation is actually worsening in the United States and the expeditious completion of radiation treatments continues to be difficult secondary to a number of patients and treatment related issues. This analysis evaluates the current data on treatment intervals in the management of head and neck cancer. Rapid staging/diagnosis of head and neck cancer, appropriate referrals to providers qualified to treat said cancer, and expeditious treatment completion remains the most cost-effective, widely applicable method to improve outcomes in head and neck cancer.

增加治疗包时间是头颈部鳞状细胞癌(HNSCC)预后不良的独立因素。同样,开始治疗的时效性也是疾病复发的一个危险因素。尽管存在这些众所周知的问题,但在美国,治疗开始的及时性实际上正在恶化,并且由于许多患者和治疗相关问题,快速完成放射治疗仍然是困难的。本分析评估了目前头颈癌治疗间隔的数据。快速分期/诊断头颈癌,适当转诊到有资格治疗该癌症的提供者,快速完成治疗仍然是改善头颈癌预后的最具成本效益和广泛适用的方法。
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引用次数: 2
Nodal disease predicts recurrence whereas other traditional factors affect survival in a cohort of South African patients with differentiated thyroid carcinoma. 淋巴结疾病预测复发,而其他传统因素影响南非分化型甲状腺癌患者的生存。
Pub Date : 2018-11-19 eCollection Date: 2018-01-01 DOI: 10.1186/s41199-018-0037-5
B Robertson, M Parker, L Shepherd, E Panieri, L Cairncross, F Malherbe, I L Ross, F Omar, A Hunter

Background and aim: Information on patients with differentiated thyroid carcinoma in South Africa is limited. The objective of this study was to review demographics and tumour characteristics in a cohort of patients with differentiated thyroid carcinoma, presenting to Groote Schuur Hospital and evaluate risk factors for recurrence and survival.

Patients and methodology: Retrospective demographic and clinical data were collected on all patients referred between January 2003 and December 2013. Prognostic factors for recurrence free survival and cancer specific survival were assessed using univariate and multivariate analyses.

Results: The total number of patients was 231.The median age at presentation was 44 years and 82% were female patients. The pathological sub-types were papillary (60.6%), follicular (38.9%) and poorly differentiated (0.5%). Total thyroidectomy was performed in 191 patients and 30 patients required neck dissections. A total of 171 (74%) patients received 131Iodine. The recurrence free and cause specific survival rates at 10 years were 83 and 91%, respectively. Nodal disease at presentation was the only significant risk factor for recurrence (p <  0.001) on multivariate analysis. Significant risk factors for cause specific mortality were age ≥ 45 years (p = 0.006), follicular pathology (p = 0.004), extra-thyroid extension (p = 0.013) and residual tumour (p = 0.004).

Conclusions: Consistent with international trends, patients with differentiated thyroid carcinoma treated at Groote Schuur Hospital had a favourable prognosis. The known risk factors associated with recurrence and survival in this South African cohort were consistent with those reported in developed countries.

背景和目的:南非分化型甲状腺癌患者的信息有限。本研究的目的是回顾在Groote Schuur医院就诊的分化型甲状腺癌患者的人口统计学和肿瘤特征,并评估复发和生存的危险因素。患者和方法:收集2003年1月至2013年12月间所有患者的回顾性人口统计学和临床数据。使用单因素和多因素分析评估无复发生存和癌症特异性生存的预后因素。结果:患者总数231例。发病时的中位年龄为44岁,82%为女性患者。病理分型以乳头状(60.6%)、滤泡状(38.9%)和低分化(0.5%)为主。191例患者行甲状腺全切除术,30例患者行颈部清扫术。171例(74%)患者接受131碘治疗。10年无复发和病因特异性生存率分别为83%和91%。淋巴结疾病是复发的唯一显著危险因素(p = 0.006),滤泡病理(p = 0.004),甲状腺外延伸(p = 0.013)和残留肿瘤(p = 0.004)。结论:与国际趋势一致,在格罗特舒尔医院治疗的分化型甲状腺癌患者预后良好。南非队列中已知的与复发和生存相关的危险因素与发达国家的报道一致。
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引用次数: 3
期刊
Cancers of the head & neck
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