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Yin and Yang of Gut Microbiota in Cocaine Abuse. 可卡因滥用中肠道微生物群的阴与阳
IF 3.3 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-06-17 DOI: 10.31083/j.fbl2906215
Simone Baldi, Elisabetta Gerace, Guido Mannaioni, Amedeo Amedei
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引用次数: 0
Comparative Effects of Umbilical Cord Mesenchymal Stem Cell Treatment via Different Routes on Lipopolysaccharide-Induced Acute Lung Injury. 通过不同途径处理脐带间充质干细胞对脂多糖诱发的急性肺损伤的比较效应
IF 3.3 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-06-17 DOI: 10.31083/j.fbl2906217
Xiuling Xu, Feifei Wu, Qiang Zhang, Shasha Xu, Xunxun Ying, Xiaohong Fang, Ruolang Pan, Yang Jin

Background: Although umbilical cord mesenchymal stem cell (UCMSC) infusion has been proposed as a promising strategy for the treatment of acute lung injury (ALI), the parameters of UCMSC transplantation, such as infusion routes and doses, need to be further optimized.

Methods: In this study, we compared the therapeutic effects of UCMSCs transplanted via intravenous injection and intratracheal instillation on lipopolysaccharide-induced ALI using a rat model. Following transplantation, levels of inflammatory factors in serum; neutrophils, total white blood cells, and lymphocytes in bronchoalveolar lavage fluid (BALF); and lung damage levels were analyzed.

Results: The results indicated that UCMSCs administered via both intravenous and intratracheal routes were effective in alleviating ALI, as determined by analyses of arterial blood gas, lung histopathology, BALF contents, and levels of inflammatory factors. Comparatively, the intratracheal instillation of UCMSCs was found to result in lower levels of lymphocytes and total proteins in BALF, whereas greater reductions in the serum levels of tumor necrosis factor α (TNF-α) and interleukin 1β (IL-1β) were detected in rats receiving intravenously injected stem cells.

Conclusions: Our findings in this study provide convincing evidence to indicate the efficacy of UCMSC therapy in the treatment of ALI mediated via different delivery routes, thereby providing a reliable theoretical basis for further clinical studies. Moreover, these findings imply that the effects obtained using the two assessed delivery routes for UCMSC transplantation are mediated via different mechanisms, which could be attributable to different cellular or molecular targets.

背景:尽管脐带间充质干细胞(UCMSC)输注已被认为是治疗急性肺损伤(ALI)的一种有前景的策略,但UCMSC移植的参数,如输注途径和剂量,仍需进一步优化:在这项研究中,我们利用大鼠模型比较了通过静脉注射和气管内灌注移植的 UCMSCs 对脂多糖诱导的 ALI 的治疗效果。移植后,对血清中的炎症因子水平、支气管肺泡灌洗液(BALF)中的中性粒细胞、白细胞总数和淋巴细胞水平以及肺损伤水平进行了分析:结果:结果表明,通过动脉血气、肺组织病理学、支气管肺泡灌洗液(BALF)内容物和炎症因子水平的分析,通过静脉和气管内途径给药的 UCMSCs 均能有效缓解 ALI。比较发现,气管内灌注 UCMSCs 可降低 BALF 中的淋巴细胞和总蛋白水平,而静脉注射干细胞的大鼠血清中肿瘤坏死因子 α(TNF-α)和白细胞介素 1β(IL-1β)的水平降低幅度更大:我们的研究结果提供了令人信服的证据,表明 UCMSC 治疗通过不同给药途径介导的 ALI 具有疗效,从而为进一步的临床研究提供了可靠的理论依据。此外,这些研究结果还表明,使用两种评估的给药途径进行 UCMSC 移植所获得的疗效是通过不同的机制介导的,这可能归因于不同的细胞或分子靶点。
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引用次数: 0
Bispecific Antibodies for Multiple Myeloma: Recent Advancements and Strategies for Increasing Their Efficacy. 治疗多发性骨髓瘤的双特异性抗体:提高疗效的最新进展和策略》。
IF 3.3 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-06-17 DOI: 10.31083/j.fbl2906216
Moran Wang, Chaofan Wang, Jun Deng, Huafang Wang, Chunyan Sun, Shanshan Luo, Yu Hu

The treatment options for multiple myeloma (MM) have undergone significant transformation with the advent of immunotherapy. Novel therapies that focus on tumor antigens now drive advances in MM research. Bispecific antibodies (bsAbs) leverage revolutionary advances in bioengineering techniques and embody the second generation of antibody-based tumor therapy. Recent studies on bsAbs in relapsed/refractory MM cases have revealed remarkable efficacy and acceptable safety profiles. The approval of elranatamab and teclistamab represents the next step in the development of bsAbs for the treatment of MM. This review article addresses the antigen targeting, efficacy, safety, and strategies in the application of bsAbs against treatment-resistant MM, with a focus on clinical trials and real-world data.

随着免疫疗法的出现,多发性骨髓瘤(MM)的治疗方案发生了重大转变。目前,以肿瘤抗原为重点的新型疗法推动了多发性骨髓瘤研究的进展。双特异性抗体(bsAbs)利用生物工程技术的革命性进步,体现了第二代基于抗体的肿瘤疗法。最近对复发/难治性 MM 病例进行的 bsAbs 研究显示,其疗效显著,安全性可接受。elranatamab和teclistamab的获批标志着bsAbs治疗MM的下一步发展。这篇综述文章探讨了应用 bsAbs 治疗耐药 MM 的抗原靶向、疗效、安全性和策略,重点是临床试验和真实世界的数据。
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引用次数: 0
Balancing Act: Exploring the Gut Microbiota-Brown Adipose Tissue Axis in PCOS Pathogenesis and Therapeutic Frontiers. 平衡法:探索 PCOS 发病机制中的肠道微生物群-棕色脂肪组织轴和治疗前沿。
IF 3.3 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-05-30 DOI: 10.31083/j.fbl2906208
Yanhui Li, Yuqing Fang, Hongbo Wang, Hangke Zhang

Polycystic ovary syndrome (PCOS) is a prevalent reproductive, endocrine, and metabolic disease that affects 5-18% of women worldwide, with a rising incidence. Hyperandrogenemia and insulin resistance are two key pathophysiological factors that contribute to PCOS, both of which contribute to a variety of health issues such as menstrual irregularities, obesity, dysfunctional glucose and lipid homeostasis, infertility, mental disorders, and cardiovascular and cerebrovascular diseases. Despite ongoing studies, the origin and pathogenesis of PCOS remain elusive; there is also a clinical need for simpler, more effective, longer lasting, and more comprehensive treatments for women with PCOS. The gut-fat axis, a critical regulatory route for metabolism, endocrine function, and immune response, has received considerable interest in recent years in the research of the etiology and treatment of metabolic illnesses such as type 2 diabetes mellitus and non-alcoholic fatty liver disease. The latest research in PCOS has revealed significant alterations in the homogeneity and phylogenetic diversity of the gut microbiota. Animal research using fecal microbiota transplantation has confirmed the importance of gut microbiota in regulating insulin sensitivity and sex hormone balance in PCOS. Furthermore, studies have shown a decrease in the volume and/or activity of brown adipose tissue (BAT) in PCOS patients, a change that alters adipokine release, leading to insulin resistance and hyperandrogenemia, aggravating PCOS progression. Given the function of BAT in increasing energy expenditure and alleviating metabolic parameters, efforts to activate BAT or induce browning of white adipose tissue have emerged as possible treatments for PCOS. Recent research has suggested that the gut microbiota can influence BAT creation and activity via metabolites such as short-chain fatty acids and bile acids, as well as the gut-brain axis. Cold exposure, healthy dieting, metformin, bariatric surgery, glucagon-like peptide 1 receptor agonists and melatonin have all been shown in basic and clinical studies to modulate BAT activity by influencing the gut microbiota, demonstrating significant clinical potential. However, more studies into the regulation mechanisms of the gut-BAT axis are required to produce more effective, comfortable, and safe tailored therapeutics for PCOS.

多囊卵巢综合征(PCOS)是一种普遍存在的生殖、内分泌和代谢疾病,影响着全球 5-18% 的女性,而且发病率还在不断上升。高雄激素血症和胰岛素抵抗是导致多囊卵巢综合征的两个关键病理生理因素,这两个因素会导致多种健康问题,如月经不调、肥胖、糖脂平衡失调、不孕、精神障碍、心脑血管疾病等。尽管相关研究仍在进行,但多囊卵巢综合征的起源和发病机制仍难以捉摸;临床上也需要为患有多囊卵巢综合征的妇女提供更简单、更有效、更持久和更全面的治疗方法。肠道-脂肪轴是新陈代谢、内分泌功能和免疫反应的重要调节途径,近年来在 2 型糖尿病和非酒精性脂肪肝等代谢性疾病的病因和治疗研究中受到了广泛关注。对多囊卵巢综合征的最新研究发现,肠道微生物群的同质性和系统发育多样性发生了显著变化。利用粪便微生物群移植进行的动物研究证实,肠道微生物群在调节多囊卵巢综合征患者的胰岛素敏感性和性激素平衡方面具有重要作用。此外,研究还表明,多囊卵巢综合症患者棕色脂肪组织(BAT)的体积和/或活性下降,这种变化会改变脂肪因子的释放,导致胰岛素抵抗和高雄激素血症,从而加重多囊卵巢综合症的发展。鉴于棕色脂肪组织在增加能量消耗和缓解代谢参数方面的功能,激活棕色脂肪组织或诱导白色脂肪组织棕色化已成为治疗多囊卵巢综合征的可能方法。最近的研究表明,肠道微生物群可通过短链脂肪酸和胆汁酸等代谢物以及肠脑轴影响 BAT 的生成和活性。基础和临床研究均表明,寒冷暴露、健康节食、二甲双胍、减肥手术、胰高血糖素样肽 1 受体激动剂和褪黑素可通过影响肠道微生物群来调节 BAT 的活性,显示出巨大的临床潜力。然而,要为多囊卵巢综合症开发出更有效、更舒适、更安全的定制疗法,还需要对肠道-BAT 轴的调节机制进行更多的研究。
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引用次数: 0
LncRNA-PVT1 Inhibits Ferroptosis through Activating STAT3/GPX4 Axis to Promote Osteosarcoma Progression. LncRNA-PVT1通过激活STAT3/GPX4轴抑制铁凋亡促进骨肉瘤进展
IF 3.3 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-05-30 DOI: 10.31083/j.fbl2906207
Guangshuai Li, Ji Feng, Shengbin Huang, Qingchang Li

Background: Osteosarcoma (OS) is a primary malignant bone tumor in the pediatric and adolescent populations. Long non-coding RNAs (LncRNAs), such as plasma-cytoma variant translocation 1 (PVT1), have emerged as significant regulators of OS metastasis. Recent studies have indicated that activation of signal transducer and activator of transcription 3 (STAT3) signaling, which might be controlled by PVT1, inhibits ferroptosis to promote the malignant progression of cancer. Therefore, the present study aimed to determine the role of PVT1 in OS pathogenesis and investigate whether PVT1 affects OS progression by regulating STAT3/GPX4 pathway-mediated ferroptosis.

Methods: The human OS cell line MG63 were transfected with sh-PVT1 plasmid to inhibit PVT1 expression, with or without co-transfection with a STAT3 overexpression plasmid. The expression of PVT1 was determined by real-time quantitative polymerase chain reaction (RT-qPCR). The proliferation, migration, invasion, and apoptosis of MG63 cells were determined using the cell counting kit-8 (CCK8), Transwell assay, and flow cytometry. The levels of malondialdehyde (MDA), Fe2+, and glutathione (GSH) were determined by ELISA kits, whereas reactive oxygen species (ROS) level was determined by immunofluorescence. The protein expression levels of STAT3, p-STAT3, and glutathione peroxidase 4 (GPX4) were detected by western blot (WB).

Results: PVT1 expression was significantly increased in MG63 cells. When knocking down PVT1 with sh-PVT1 plasmid, the proliferation, migration, and invasion of MG63 cells were markedly inhibited, while the rate of apoptosis was upregulated. Further investigation revealed that MG63 cells with PVT1 knockdown exhibited elevated levels of MDA, Fe2+, and ROS. In addition, the inhibition of PVT1 expression resulted in decreased levels of GSH and inhibited expression of p-STAT3 and GPX4. When sh-PVT1 was co-transfected with STAT3 overexpression plasmid in MG63 cells, the increased levels of MDA, Fe2+, and ROS were downregulated, and the decreased expressions of GSH, p-STAT3, and GPX4 were upregulated.

Conclusion: PVT1 promotes OS metastasis by activating the STAT3/GPX4 pathway to inhibit ferroptosis. Targeting PVT1 might be a novel therapeutic strategy for OS treatment.

背景:骨肉瘤(OS)是儿童和青少年群体中的一种主要恶性骨肿瘤。长非编码 RNA(LncRNA),如浆细胞瘤变异易位 1(PVT1),已成为骨肉瘤转移的重要调节因子。最近的研究表明,可能受 PVT1 控制的信号转导和激活转录 3(STAT3)信号的激活会抑制铁突变,从而促进癌症的恶性进展。因此,本研究旨在确定PVT1在OS发病机制中的作用,并探讨PVT1是否通过调节STAT3/GPX4通路介导的铁突变来影响OS的进展:方法:用sh-PVT1质粒转染人OS细胞株MG63以抑制PVT1的表达,同时转染或不转染STAT3过表达质粒。通过实时定量聚合酶链反应(RT-qPCR)测定 PVT1 的表达。使用细胞计数试剂盒-8(CCK8)、Transwell 试验和流式细胞术测定了 MG63 细胞的增殖、迁移、侵袭和凋亡。丙二醛(MDA)、Fe2+和谷胱甘肽(GSH)的水平通过酶联免疫吸附试剂盒测定,活性氧(ROS)的水平通过免疫荧光测定。采用免疫印迹法(WB)检测 STAT3、p-STAT3 和谷胱甘肽过氧化物酶 4(GPX4)的蛋白表达水平:结果:MG63 细胞中 PVT1 的表达明显增加。用 sh-PVT1 质粒敲除 PVT1 后,MG63 细胞的增殖、迁移和侵袭明显受到抑制,而细胞凋亡率则有所上升。进一步研究发现,敲除 PVT1 的 MG63 细胞表现出 MDA、Fe2+ 和 ROS 水平的升高。此外,抑制 PVT1 的表达会导致 GSH 水平下降,并抑制 p-STAT3 和 GPX4 的表达。当 sh-PVT1 与 STAT3 过表达质粒共转染 MG63 细胞时,MDA、Fe2+ 和 ROS 水平的升高被下调,GSH、p-STAT3 和 GPX4 表达的降低被上调:结论:PVT1通过激活STAT3/GPX4通路抑制铁变态反应促进OS转移。结论:PVT1通过激活STAT3/GPX4通路抑制铁氧化酶促进OS转移,靶向PVT1可能是治疗OS的一种新的治疗策略。
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引用次数: 0
Mechanisms and Advances of Epigenetic Regulation in Cardiovascular Disease. 心血管疾病表观遗传调控的机制和进展。
IF 3.3 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-05-28 DOI: 10.31083/j.fbl2906205
Xiaojun Wang, Xusheng Teng, Chao Luo, Laifa Kong

Epigenetics refers to heritable changes in gene expression and function that impact nuclear processes associated with chromatin, all without altering DNA sequences. These epigenetic patterns, being heritable traits, are vital biological mechanisms that intricately regulate gene expression and heredity. The application of chemical labeling and single-cell resolution mapping strategies has significantly facilitated large-scale epigenetic modifications in nucleic acids over recent years. Notably, epigenetic modifications can induce heritable phenotypic changes, regulate cell differentiation, influence cell-specific gene expression, parentally imprint genes, activate the X chromosome, and stabilize genome structure. Given their reversibility and susceptibility to environmental factors, epigenetic modifications have gained prominence in disease diagnosis, significantly impacting clinical medicine research. Recent studies have uncovered strong links between epigenetic modifications and the pathogenesis of metabolic cardiovascular diseases, including congenital heart disease, heart failure, cardiomyopathy, hypertension, and atherosclerosis. In this review, we provide an overview of the progress in epigenetic research within the context of cardiovascular diseases, encompassing their pathogenesis, prevention, diagnosis, and treatment. Furthermore, we shed light on the potential prospects of nucleic acid epigenetic modifications as a promising avenue in clinical medicine and biomedical applications.

表观遗传学指的是基因表达和功能的遗传变化,这些变化会影响与染色质相关的核过程,但不会改变 DNA 序列。这些表观遗传模式作为遗传性状,是错综复杂地调节基因表达和遗传的重要生物机制。近年来,化学标记和单细胞分辨率绘图策略的应用极大地促进了核酸的大规模表观遗传修饰。值得注意的是,表观遗传修饰可诱导遗传表型变化、调控细胞分化、影响细胞特异性基因表达、亲代印记基因、激活 X 染色体以及稳定基因组结构。鉴于表观遗传修饰的可逆性和易受环境因素影响的特点,表观遗传修饰在疾病诊断中的地位日益突出,对临床医学研究产生了重大影响。最近的研究发现,表观遗传修饰与代谢性心血管疾病(包括先天性心脏病、心力衰竭、心肌病、高血压和动脉粥样硬化)的发病机制密切相关。在这篇综述中,我们概述了在心血管疾病方面的表观遗传学研究进展,包括其发病机制、预防、诊断和治疗。此外,我们还阐述了核酸表观遗传修饰在临床医学和生物医学应用中的潜在前景。
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引用次数: 0
Molecular Pathways Regulating Circadian Rhythm and Associated Diseases. 调节昼夜节律和相关疾病的分子途径。
IF 3.3 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-05-28 DOI: 10.31083/j.fbl2906206
Min Ding, Hang Zhou, Yu-Mei Li, Yun-Wen Zheng

Circadian rhythms, the natural cycles of physical, mental, and behavioral changes that follow a roughly 24-hour cycle, are known to have a profound effect on the human body. Light plays an important role in the regulation of circadian rhythm in human body. When light from the outside enters the eyes, cones, rods, and specialized retinal ganglion cells receive the light signal and transmit it to the suprachiasmatic nucleus of the hypothalamus. The central rhythm oscillator of the suprachiasmatic nucleus regulates the rhythm oscillator of tissues all over the body. Circadian rhythms, the natural cycles of physical, mental, and behavioral changes that follow a roughly 24-hour cycle, are known to have a profound effect on the human body. As the largest organ in the human body, skin plays an important role in the peripheral circadian rhythm regulation system. Like photoreceptor cells in the retina, melanocytes express opsins. Studies show that melanocytes in the skin are also sensitive to light, allowing the skin to "see" light even without the eyes. Upon receiving light signals, melanocytes in the skin release hormones that maintain homeostasis. This process is called "photoneuroendocrinology", which supports the health effects of light exposure. However, inappropriate light exposure, such as prolonged work in dark environments or exposure to artificial light at night, can disrupt circadian rhythms. Such disruptions are linked to a variety of health issues, emphasizing the need for proper light management in daily life. Conversely, harnessing light's beneficial effects through phototherapy is gaining attention as an adjunctive treatment modality. Despite these advancements, the field of circadian rhythm research still faces several unresolved issues and emerging challenges. One of the most exciting prospects is the use of the skin's photosensitivity to treat diseases. This approach could revolutionize how we think about and manage various health conditions, leveraging the skin's unique ability to respond to light for therapeutic purposes. As research continues to unravel the complexities of circadian rhythms and their impact on health, the potential for innovative treatments and improved wellbeing is immense.

众所周知,昼夜节律是身体、精神和行为变化的自然周期,大致以 24 小时为一个周期,对人体有着深远的影响。光在调节人体昼夜节律方面发挥着重要作用。当外界光线进入眼睛时,锥状体、视杆细胞和特殊的视网膜神经节细胞会接收光信号,并将其传递到下丘脑上核。下丘脑上核的中枢节律振荡器调节全身组织的节律振荡器。众所周知,昼夜节律是身体、精神和行为变化的自然周期,大致以 24 小时为一个周期,对人体有着深远的影响。作为人体最大的器官,皮肤在外周昼夜节律调节系统中扮演着重要角色。与视网膜上的感光细胞一样,黑色素细胞也表达蛋白。研究表明,皮肤中的黑色素细胞对光线也很敏感,因此即使没有眼睛,皮肤也能 "看见 "光线。接收到光信号后,皮肤中的黑色素细胞会释放荷尔蒙,以维持体内平衡。这一过程被称为 "光神经内分泌学",它支持光照射对健康的影响。然而,不适当的光照,如长期在黑暗环境中工作或夜间接触人造光,会扰乱昼夜节律。这种干扰与各种健康问题有关,这就强调了在日常生活中对光线进行适当管理的必要性。相反,作为一种辅助治疗方式,通过光疗利用光的有益作用正日益受到关注。尽管取得了这些进展,昼夜节律研究领域仍然面临着一些尚未解决的问题和新出现的挑战。最令人兴奋的前景之一是利用皮肤的光敏性来治疗疾病。利用皮肤对光的独特反应能力来达到治疗目的,这种方法将彻底改变我们对各种健康状况的看法和管理方式。随着研究不断揭示昼夜节律的复杂性及其对健康的影响,创新治疗和改善健康的潜力是巨大的。
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引用次数: 0
Revealing the Role of CYP346 Family Genes on Phosphine Resistance in Indian Populations of Tribolium castaneum. 揭示印度种群中 CYP346 家族基因对磷化氢抗性的作用
IF 3.3 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-05-27 DOI: 10.31083/j.fbl2906203
Mudagadde G Deeksha, Suresh M Nebapure, Doddachowdappa Sagar, Ramcharan Bhattacharya, Anil Dahuja, Sabtharishi Subramanian

Background: Phosphine resistance in Tribolium castaneum challenges grain storage. This study investigates the impact of cytochrome P450 (CYP) enzymes and CYP346 family genes on phosphine resistance in Indian Tribolium castaneum populations.

Methods: Seven field populations of T. castaneum were compared with Lab- susceptible population for their resistance to phosphine. The levels of cytochrome P450 enzyme and expression of certain CYP346 family genes were tracked in these populations.

Results: The highly resistant Patiala population showed significantly increased CYP450 activity (11.26 ± 0.14 nmol/min/mg protein, 7.41-fold higher) compared to the lab-susceptible population (1.52 ± 0.09 nmol/min/mg protein) when assayed using 8 mM p-nitroanisole as the substrate. The mRNA expression was measured relative to the standard gene RPS18 and revealed significant upregulation of CYP346B1 and CYP346B3 in highly resistant populations Moga and Patiala (CYP346B1: 12.09 ± 2.19 to 21.74 ± 3.82; CYP346B3: 59.097 ± 10.265 to 50.148 ± 8.272). Patiala's CYP346B1 exhibited an impressive 685.76-fold change, and Moga's CYP346B3 showed a 361.893-fold change compared to lab-susceptible. Linear regression confirmed robust fits for each gene (R2: 0.693 to 0.756). Principal component analysis (PCA) demonstrated a strong positive correlation between CYP346 genes expression; and cytochrome P450 activity. Patiala, Moga, and Hapur populations showed conformity, associating higher resistance with increased P450 activity and CYP346 gene expression. Cluster analysis highlighted a potential correlation between CYP346B1, CYP346B2, and CYP346B3 and P450 activity, with Patiala and Moga clustering together.

Conclusions: Variability in CYP346B1 and CYP346B3 in strong resistance populations may contribute to adaptation and resistance mechanisms. The study provides insights into specific CYP346 family genes associated with phosphine resistance, emphasizing the intricate interaction between CYP450 detoxifying enzymes, CYP346 family genes, and resistance mechanisms. The upregulation of CYP346 genes suggests a survival advantage for T. castaneum against phosphine, diminishing phosphine's efficacy as a pest control measure.

背景:Tribolium castaneum对磷化氢的抗性给谷物储藏带来了挑战。本研究调查了细胞色素 P450(CYP)酶和 CYP346 家族基因对印度蓖麻毛虫种群抗磷化氢能力的影响:方法:比较了七个田间种群与实验室易感种群对膦的抗性。对这些种群中细胞色素 P450 酶的水平和某些 CYP346 家族基因的表达进行了追踪:结果:以 8 mM 对硝基苯甲醚为底物进行测定时,高抗性帕蒂亚拉种群的 CYP450 活性(11.26 ± 0.14 nmol/min/mg蛋白,高出 7.41 倍)明显高于实验室易感种群(1.52 ± 0.09 nmol/min/mg蛋白)。相对于标准基因 RPS18,对 mRNA 的表达进行了测量,结果显示,在高抗性种群 Moga 和 Patiala 中,CYP346B1 和 CYP346B3 的表达显著上调(CYP346B1:12.09 ± 2.19 至 21.74 ± 3.82;CYP346B3:59.097 ± 10.265 至 50.148 ± 8.272)。与实验室易感基因相比,帕蒂亚拉的 CYP346B1 基因变化了 685.76 倍,莫加的 CYP346B3 基因变化了 361.893 倍。线性回归证实了每个基因的稳健拟合(R2:0.693 至 0.756)。主成分分析(PCA)表明,CYP346 基因的表达与细胞色素 P450 活性之间存在很强的正相关性。帕蒂亚拉、莫加和哈布尔的人群表现出一致性,即较高的抗药性与较高的 P450 活性和 CYP346 基因表达有关。聚类分析强调了 CYP346B1、CYP346B2 和 CYP346B3 与 P450 活性之间的潜在相关性,帕蒂亚拉和莫加聚类在一起:强抗性人群中 CYP346B1 和 CYP346B3 的变异可能有助于适应和抗性机制。这项研究深入揭示了与膦类化合物抗性相关的特定 CYP346 家族基因,强调了 CYP450 解毒酶、CYP346 家族基因和抗性机制之间错综复杂的相互作用。CYP346 基因的上调表明,T. castaneum 对磷化氢具有生存优势,从而降低了磷化氢作为害虫控制措施的功效。
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引用次数: 0
DEPDC1B is a Novel Direct Target of B-Myb and Contributes to Malignant Progression and Immune Infiltration in Lung Adenocarcinoma. DEPDC1B 是 B-Myb 的新型直接靶标,有助于肺腺癌的恶性进展和免疫渗透
IF 3.3 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-05-27 DOI: 10.31083/j.fbl2906204
Xiaofeng Zuo, Dongyu Wang, Chuntao Tao, Xuanqi Dou, Zongrong Zhao, Jinlu Zhang, Shiyi Huang, Yue Li, Xia Zhang, Youquan Bu, Yitao Wang

Background: Lung cancer is the primary cause of cancer-related deaths, with one of the highest incidence and mortality rates of all malignant tumors. Dysregulated expression of DEPDC1B has been reported to occur in various tumor types. However, the functional implications of this alteration in lung adenocarcinoma (LUAD) and the underlying molecular mechanism remains unclear. In this study, we investigated the role and clinical significance of DEPDC1B in LUAD.

Methods: The expression of DEPDC1B in LUAD and its relationship with prognosis were systematically evaluated in several publically available datasets. The effects of DEPDC1B knockdown on the proliferation and motility of LUAD cells were assessed using the JULI Stage Real-time Cell History Recorder, while the effect of knockdown on the cell cycle was studied by flow cytometry. Furthermore, RNA-Sequencing (RNA-Seq) analysis was conducted to identify the downstream target genes and pathways regulated by DEPDC1B. Correlations between the expression of DEPDC1B and immune cell infiltration, immunotherapy resistance, and chemoresistance were also examined. Additionally, molecular biological methods were used to explore the regulatory mechanism of B-Myb on DEPDC1B expression.

Results: DEPDC1B was found to be upregulated in LUAD patients and this was associated with poor clinical outcomes. Knockdown of DEPDC1B inhibited cell growth, migration and motility, as well as cell cycle progression. Knockdown also resulted in the down-regulation of several downstream genes, including NID1, FN1, and EGFR, as well as the inactivation of multiple critical pathways, such as the ERK and PI3K-AKT pathways. Analysis of the tumor immuno-environment in LUAD revealed that high DEPDC1B expression was associated with an abundance of activated CD4+ memory T cells, M0 macrophages, M1 macrophages, and CD8+ T cells. Moreover, these tumors responded poorly to immunotherapy. Analysis of chemo-drug sensitivity showed that LUADs with high DEPDC1B expression were more responsive to frontline chemotherapeutic drugs such as Vinorelbine, Cisplatin, and Etoposide. Additionally, mechanistic investigations revealed that DEPDC1B is a direct target gene of B-Myb, and that its knockdown attenuated the proliferation and motility effects of B-Myb.

Conclusions: In summary, our findings indicate that DEPDC1B is a critical regulator during the malignant progression of LUAD. DEPDC1B could therefore be a promising prognostic marker and therapeutic target in LUAD diagnosis and treatment.

背景:肺癌是导致癌症相关死亡的主要原因,是发病率和死亡率最高的恶性肿瘤之一。据报道,各种类型的肿瘤中都存在 DEPDC1B 表达失调的情况。然而,这种改变在肺腺癌(LUAD)中的功能影响及其潜在的分子机制仍不清楚。本研究探讨了 DEPDC1B 在 LUAD 中的作用和临床意义:方法:在多个公开数据集中系统评估了DEPDC1B在LUAD中的表达及其与预后的关系。使用JULI Stage实时细胞历史记录仪评估了DEPDC1B基因敲除对LUAD细胞增殖和运动的影响,同时使用流式细胞术研究了基因敲除对细胞周期的影响。此外,还进行了RNA测序(RNA-Seq)分析,以确定受DEPDC1B调控的下游靶基因和通路。还研究了 DEPDC1B 的表达与免疫细胞浸润、免疫治疗耐药性和化疗耐药性之间的相关性。此外,还采用分子生物学方法探讨了B-Myb对DEPDC1B表达的调控机制:结果:研究发现,DEPDC1B在LUAD患者中上调,这与不良的临床预后有关。敲除 DEPDC1B 可抑制细胞的生长、迁移和运动以及细胞周期的进展。基因敲除还导致多个下游基因(包括NID1、FN1和表皮生长因子受体)下调,以及多个关键通路(如ERK和PI3K-AKT通路)失活。对 LUAD 肿瘤免疫环境的分析表明,DEPDC1B 的高表达与大量活化的 CD4+ 记忆 T 细胞、M0 巨噬细胞、M1 巨噬细胞和 CD8+ T 细胞有关。此外,这些肿瘤对免疫疗法的反应较差。化疗药物敏感性分析表明,DEPDC1B高表达的LUAD对一线化疗药物(如长春瑞滨、顺铂和依托泊苷)更敏感。此外,机理研究还发现,DEPDC1B是B-Myb的直接靶基因,其敲除可减轻B-Myb的增殖和运动效应:综上所述,我们的研究结果表明,DEPDC1B是LUAD恶性发展过程中的关键调节因子。综上所述,我们的研究结果表明,DEPDC1B是LUAD恶性进展过程中的关键调控因子,因此DEPDC1B可能成为LUAD诊断和治疗中一个有前景的预后标志物和治疗靶点。
{"title":"DEPDC1B is a Novel Direct Target of B-Myb and Contributes to Malignant Progression and Immune Infiltration in Lung Adenocarcinoma.","authors":"Xiaofeng Zuo, Dongyu Wang, Chuntao Tao, Xuanqi Dou, Zongrong Zhao, Jinlu Zhang, Shiyi Huang, Yue Li, Xia Zhang, Youquan Bu, Yitao Wang","doi":"10.31083/j.fbl2906204","DOIUrl":"10.31083/j.fbl2906204","url":null,"abstract":"<p><strong>Background: </strong>Lung cancer is the primary cause of cancer-related deaths, with one of the highest incidence and mortality rates of all malignant tumors. Dysregulated expression of DEPDC1B has been reported to occur in various tumor types. However, the functional implications of this alteration in lung adenocarcinoma (LUAD) and the underlying molecular mechanism remains unclear. In this study, we investigated the role and clinical significance of DEPDC1B in LUAD.</p><p><strong>Methods: </strong>The expression of DEPDC1B in LUAD and its relationship with prognosis were systematically evaluated in several publically available datasets. The effects of DEPDC1B knockdown on the proliferation and motility of LUAD cells were assessed using the JULI Stage Real-time Cell History Recorder, while the effect of knockdown on the cell cycle was studied by flow cytometry. Furthermore, RNA-Sequencing (RNA-Seq) analysis was conducted to identify the downstream target genes and pathways regulated by DEPDC1B. Correlations between the expression of DEPDC1B and immune cell infiltration, immunotherapy resistance, and chemoresistance were also examined. Additionally, molecular biological methods were used to explore the regulatory mechanism of B-Myb on DEPDC1B expression.</p><p><strong>Results: </strong>DEPDC1B was found to be upregulated in LUAD patients and this was associated with poor clinical outcomes. Knockdown of <i>DEPDC1B</i> inhibited cell growth, migration and motility, as well as cell cycle progression. Knockdown also resulted in the down-regulation of several downstream genes, including <i>NID1</i>, <i>FN1</i>, and <i>EGFR</i>, as well as the inactivation of multiple critical pathways, such as the ERK and PI3K-AKT pathways. Analysis of the tumor immuno-environment in LUAD revealed that high DEPDC1B expression was associated with an abundance of activated CD4+ memory T cells, M0 macrophages, M1 macrophages, and CD8+ T cells. Moreover, these tumors responded poorly to immunotherapy. Analysis of chemo-drug sensitivity showed that LUADs with high DEPDC1B expression were more responsive to frontline chemotherapeutic drugs such as Vinorelbine, Cisplatin, and Etoposide. Additionally, mechanistic investigations revealed that DEPDC1B is a direct target gene of B-Myb, and that its knockdown attenuated the proliferation and motility effects of B-Myb.</p><p><strong>Conclusions: </strong>In summary, our findings indicate that DEPDC1B is a critical regulator during the malignant progression of LUAD. DEPDC1B could therefore be a promising prognostic marker and therapeutic target in LUAD diagnosis and treatment.</p>","PeriodicalId":73069,"journal":{"name":"Frontiers in bioscience (Landmark edition)","volume":null,"pages":null},"PeriodicalIF":3.3,"publicationDate":"2024-05-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141473150","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Enhancing the Antibacterial Impact of Lipopeptide Extracted from Bacillus licheniformis as a Probiotic against MDR Acinetobacter baumannii. 增强从地衣芽孢杆菌中提取的脂肽作为益生菌对 MDR 鲍曼不动杆菌的抗菌作用
Pub Date : 2024-04-30 DOI: 10.31083/j.fbl2905171
Mahdi Hosseini Bafghi, Farangis Ghanipour, Razieh Nazari, Seyed Soheil Aghaei, Parvaneh Jafari

Background: The antibiotic resistance of microorganisms is escalating rapidly. Infections caused by opportunistic pathogens in immunocompromised individuals have prompted researchers to seek for potent and safe antibacterial agents. The purpose of this investigation was to explore the suppression of virulence gene expression, specifically the pga operon genes responsible in biofilm formation in Acinetobacter baumannii, through the utilization of metabolites obtained from probiotic bacteria.

Methods: To assess the antimicrobial properties, standard strains of five probiotic bacteria were tested against a standard strain of multidrug-resistant (MDR) A. baumannii employing the agar gel diffusion technique. Following the identification of the most potent probiotic strain (Bacillus licheniformis), the existence of its LanA and LanM genes was confirmed using the polymerase chain reaction (PCR) test. High-performance liquid chromatography (HPLC) and fourier-transform infrared spectroscopy (FTIR) techniques were employed to identify the intended metabolite, which was found to be a lipopeptide nature. The minimum inhibitory concentration (MIC) values and anti-biofilm activity of the targeted metabolite were determined using a dilution method in 96-well microplates and field emission scanning electron microscopy (FE-SEM). Real-time PCR (qPCR) was utilized for comparing the expression of pga operon genes, including pgaABCD, in A. baumannii pre- and post-exposure to the derived lipopeptide.

Results: The MIC results indicated that the probiotic product inhibited the growth of A. baumannii at concentrations lower than those needed for conventional antibiotics. Furthermore, it was observed that the desired genes' expression decreased due to the effect of this substance.

Conclusions: This research concludes that the B. licheniformis probiotic product could be a viable alternative for combating drug resistance in A. baumannii.

背景:微生物对抗生素的耐药性正在迅速升级。机会性病原体在免疫力低下的人群中引起的感染促使研究人员寻找高效安全的抗菌药物。本研究的目的是通过利用从益生菌中获得的代谢物,探索抑制鲍曼不动杆菌毒力基因表达的方法,特别是抑制鲍曼不动杆菌中负责生物膜形成的 pga 操作子基因的表达:为了评估益生菌的抗菌特性,采用琼脂凝胶扩散技术对五种益生菌的标准菌株与耐多药(MDR)鲍曼不动杆菌的标准菌株进行了测试。在确定了最有效的益生菌菌株(地衣芽孢杆菌)后,使用聚合酶链反应(PCR)测试确认了其 LanA 和 LanM 基因的存在。采用高效液相色谱(HPLC)和傅立叶变换红外光谱(FTIR)技术鉴定了预期代谢物,发现其具有脂肽性质。利用 96 孔微孔稀释法和场发射扫描电子显微镜(FE-SEM)测定了目标代谢物的最低抑菌浓度(MIC)值和抗生物膜活性。利用实时 PCR(qPCR)技术比较了鲍曼不动杆菌在接触衍生脂肽前后 pga 操作子基因(包括 pgaABCD)的表达情况:MIC结果表明,益生菌产品抑制鲍曼不动杆菌生长的浓度低于传统抗生素所需的浓度。此外,还观察到由于这种物质的作用,所需基因的表达量减少:本研究得出结论:地衣芽孢杆菌益生菌产品可以作为一种可行的替代品来对抗鲍曼不动杆菌的耐药性。
{"title":"Enhancing the Antibacterial Impact of Lipopeptide Extracted from <i>Bacillus licheniformis</i> as a Probiotic against MDR <i>Acinetobacter baumannii</i>.","authors":"Mahdi Hosseini Bafghi, Farangis Ghanipour, Razieh Nazari, Seyed Soheil Aghaei, Parvaneh Jafari","doi":"10.31083/j.fbl2905171","DOIUrl":"https://doi.org/10.31083/j.fbl2905171","url":null,"abstract":"<p><strong>Background: </strong>The antibiotic resistance of microorganisms is escalating rapidly. Infections caused by opportunistic pathogens in immunocompromised individuals have prompted researchers to seek for potent and safe antibacterial agents. The purpose of this investigation was to explore the suppression of virulence gene expression, specifically the <i>pga</i> operon genes responsible in biofilm formation in <i>Acinetobacter baumannii</i>, through the utilization of metabolites obtained from probiotic bacteria.</p><p><strong>Methods: </strong>To assess the antimicrobial properties, standard strains of five probiotic bacteria were tested against a standard strain of multidrug-resistant (MDR) <i>A. baumannii</i> employing the agar gel diffusion technique. Following the identification of the most potent probiotic strain (<i>Bacillus licheniformis</i>), the existence of its <i>LanA</i> and <i>LanM</i> genes was confirmed using the polymerase chain reaction (PCR) test. High-performance liquid chromatography (HPLC) and fourier-transform infrared spectroscopy (FTIR) techniques were employed to identify the intended metabolite, which was found to be a lipopeptide nature. The minimum inhibitory concentration (MIC) values and anti-biofilm activity of the targeted metabolite were determined using a dilution method in 96-well microplates and field emission scanning electron microscopy (FE-SEM). Real-time PCR (qPCR) was utilized for comparing the expression of <i>pga</i> operon genes, including <i>pgaABCD</i>, in <i>A. baumannii</i> pre- and post-exposure to the derived lipopeptide.</p><p><strong>Results: </strong>The MIC results indicated that the probiotic product inhibited the growth of <i>A. baumannii</i> at concentrations lower than those needed for conventional antibiotics. Furthermore, it was observed that the desired genes' expression decreased due to the effect of this substance.</p><p><strong>Conclusions: </strong>This research concludes that the <i>B. licheniformis</i> probiotic product could be a viable alternative for combating drug resistance in <i>A. baumannii</i>.</p>","PeriodicalId":73069,"journal":{"name":"Frontiers in bioscience (Landmark edition)","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-04-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141176336","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Frontiers in bioscience (Landmark edition)
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