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Decreased activity in zebrafish larvae exposed to glyphosate-based herbicides during development-potential mediation by glucocorticoid receptor. 暴露于草甘膦类除草剂的斑马鱼幼体在发育过程中活动减少--糖皮质激素受体可能起中介作用。
IF 3.6 Q2 TOXICOLOGY Pub Date : 2024-08-06 eCollection Date: 2024-01-01 DOI: 10.3389/ftox.2024.1397477
S Spulber, L Reis, P Alexe, S Ceccatelli

Glyphosate-based herbicides (GBH) are a widely used group of pesticides that have glyphosate (GLY) as main active compound and are used to control a wide range of weeds. Experimental and epidemiological studies point to neurotoxicity and endocrine disruption as main toxic effects. The aim of this study was to investigate the effects of developmental exposure to GLY and GBH on locomotor behavior, and the possible contribution of GR-mediated signaling. We used zebrafish (Danio rerio) larvae in a continuous exposure regimen to GLY or GBH in the rearing medium. Alongside TL wildtype, we used a mutant line carrying a mutation in the GR which prevents the GR from binding to DNA (grs357), as well as a transgenic strain expressing a variant of enhanced green fluorescent protein (d4eGFP) controlled by a promoter carrying multiple GR response elements (SR4G). We found that acute exposure to GBH, but not GLY, activates GR-mediated signaling. Using a continuous developmental exposure regime, we show that wildtype larvae exposed to GBH display decreased spontaneous activity and attenuated response to environmental stimuli, a pattern of alteration similar to the one observed in grs357 mutant larvae. In addition, developmental exposure to GBH has virtually no effects on the behavior of grs357 mutant larvae. Taken together, our data indicate that developmental exposure to GBH has more pronounced effects than GLY on behavior at 5 dpf, and that interference with GR-mediated signaling may have a relevant contribution.

草甘膦类除草剂(GBH)是一类广泛使用的杀虫剂,以草甘膦(GLY)为主要活性化合物,用于控制多种杂草。实验和流行病学研究表明,神经毒性和内分泌紊乱是主要的毒性效应。本研究的目的是调查发育期接触 GLY 和 GBH 对运动行为的影响,以及 GR 介导的信号转导可能造成的影响。我们使用斑马鱼(Danio rerio)幼体在饲养培养基中连续暴露于 GLY 或 GBH。除 TL 野生型外,我们还使用了一种携带 GR 突变的突变品系(grs357),该突变品系可阻止 GR 与 DNA 结合;此外,我们还使用了一种表达增强型绿色荧光蛋白(d4eGFP)的转基因品系,该变体由携带多个 GR 响应元件(SR4G)的启动子控制。我们发现,急性暴露于 GBH(而非 GLY)会激活 GR 介导的信号传导。通过持续的发育暴露机制,我们发现暴露于 GBH 的野生型幼虫的自发活动减少,对环境刺激的反应减弱,这种改变模式类似于在 grs357 突变体幼虫中观察到的模式。此外,发育期暴露于 GBH 对 grs357 突变体幼虫的行为几乎没有影响。总之,我们的数据表明,发育暴露于 GBH 比暴露于 GLY 对 5 dpf 幼虫的行为有更明显的影响,而干扰 GR 介导的信号传导可能有相关的作用。
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引用次数: 0
Hypoactivity and neurochemical alterations in the basal ganglia of female Sprague-Dawley rats after repeated exposure to atrazine. 反复接触阿特拉津后,雌性 Sprague-Dawley 大鼠基底神经节活动减弱和神经化学变化。
IF 3.6 Q2 TOXICOLOGY Pub Date : 2024-08-05 eCollection Date: 2024-01-01 DOI: 10.3389/ftox.2024.1416708
Triana Acevedo-Huergo, Jonathan Sánchez-Yépez, María Soledad Mendoza-Trejo, Isela Hernández-Plata, Magda Giordano, Verónica Mireya Rodríguez

The herbicide atrazine (ATR) has been one of the most widely used herbicides worldwide. However, due to its indiscriminate use, it has been considered an environmental contaminant. Several studies have classified ATR as an endocrine disruptor, and it has been found to have neurotoxic effects on behavior, along with alterations in the dopaminergic, GABAergic, and glutamatergic systems in the basal ganglia of male rodents. These findings suggest that these neurotransmitter systems are targets of this herbicide. However, there are no studies evaluating the neurotoxicity of ATR in female rodents. Our study aimed to assess the effects of repeated IP injections of 100 mg ATR/kg or a vehicle every other day for 2 weeks (six injections) on the locomotor activity, content of monoamines, GABA, glutamate, and glutamine in the striatum, nucleus accumbens, ventral midbrain, and prefrontal cortex, and tyrosine hydroxylase (TH) protein levels in striatum and nucleus accumbens of female rats. Repeated 100 mg ATR/kg injections immediately decreased all the locomotor activity parameters evaluated, and such hypoactivity persisted for at least 48 h after the last ATR administration. The ATR administration increased dopamine and DOPAC content in the nucleus accumbens and the dopamine and DOPAC and serotonin and 5-HIAA content in the ventral midbrain. In contrast, the TH protein levels in the striatum and nucleus accumbens were similar between groups. Meanwhile, GABA, glutamine, and glutamate levels remained unaltered in all brain regions evaluated. The observed behavioral alterations could be associated with the monoamine changes presented by the rats. These data reveal that the nucleus accumbens and ventral midbrain are susceptible to repeated ATR exposure in female rats.

除草剂阿特拉津(ATR)一直是全球使用最广泛的除草剂之一。然而,由于其滥用,它一直被认为是一种环境污染物。多项研究已将阿特拉津归类为内分泌干扰物,并发现它对行为具有神经毒性影响,还会改变雄性啮齿动物基底神经节中的多巴胺能、GABA 能和谷氨酸能系统。这些发现表明,这些神经递质系统是这种除草剂的靶标。然而,目前还没有研究评估 ATR 对雌性啮齿动物的神经毒性。我们的研究旨在评估雌性大鼠在两周内每隔一天重复 IP 注射 100 毫克 ATR/kg 或载体(共注射六次)对其运动活性、纹状体、伏隔核、腹侧中脑和前额叶皮层中单胺类、GABA、谷氨酸和谷氨酰胺含量以及纹状体和伏隔核中酪氨酸羟化酶(TH)蛋白水平的影响。重复注射 100 毫克 ATR/kg 可立即降低所有运动活动参数,并且在最后一次注射 ATR 后,这种活动减弱至少会持续 48 小时。注射 ATR 增加了伏隔核中的多巴胺和 DOPAC 含量,以及腹侧中脑中的多巴胺和 DOPAC、5-羟色胺和 5-HIAA 含量。相比之下,各组间纹状体和伏隔核中的TH蛋白水平相似。同时,GABA、谷氨酰胺和谷氨酸的水平在所有被评估的脑区都保持不变。观察到的行为改变可能与大鼠出现的单胺变化有关。这些数据表明,雌性大鼠的伏隔核和腹侧中脑易受反复暴露于苯丙胺类兴奋剂的影响。
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引用次数: 0
Chemical respiratory sensitization-Current status of mechanistic understanding, knowledge gaps and possible identification methods of sensitizers. 化学呼吸道致敏--对致敏剂的机理认识现状、知识差距和可能的识别方法。
IF 3.6 Q2 TOXICOLOGY Pub Date : 2024-07-29 eCollection Date: 2024-01-01 DOI: 10.3389/ftox.2024.1331803
Rita Hargitai, Lucia Parráková, Tünde Szatmári, Pablo Monfort-Lanzas, Valentina Galbiati, Karine Audouze, Florence Jornod, Yvonne C M Staal, Sabina Burla, Aline Chary, Arno C Gutleb, Katalin Lumniczky, Rob J Vandebriel, Johanna M Gostner

Respiratory sensitization is a complex immunological process eventually leading to hypersensitivity following re-exposure to the chemical. A frequent consequence is occupational asthma, which may occur after long latency periods. Although chemical-induced respiratory hypersensitivity has been known for decades, there are currently no comprehensive and validated approaches available for the prospective identification of chemicals that induce respiratory sensitization, while the expectations of new approach methodologies (NAMs) are high. A great hope is that due to a better understanding of the molecular key events, new methods can be developed now. However, this is a big challenge due to the different chemical classes to which respiratory sensitizers belong, as well as because of the complexity of the response and the late manifestation of symptoms. In this review article, the current information on respiratory sensitization related processes is summarized by introducing it in the available adverse outcome pathway (AOP) concept. Potentially useful models for prediction are discussed. Knowledge gaps and gaps of regulatory concern are identified.

呼吸道过敏是一个复杂的免疫过程,最终会在再次接触化学品后导致超敏反应。一个常见的后果是职业性哮喘,它可能在长期潜伏后发生。尽管人们对化学物质诱发的呼吸道过敏症已有几十年的了解,但目前还没有全面、有效的方法来前瞻性地识别诱发呼吸道过敏症的化学物质,而人们对新方法(NAM)寄予厚望。人们对新方法寄予厚望,希望通过更好地了解分子关键事件,现在就能开发出新的方法。然而,由于呼吸道致敏物质属于不同的化学类别,以及反应的复杂性和症状的晚期表现,这是一个巨大的挑战。在这篇综述文章中,通过引入现有的不良后果途径(AOP)概念,总结了呼吸道致敏相关过程的现有信息。文章还讨论了可能有用的预测模型。文章还指出了知识差距和监管方面的差距。
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引用次数: 0
Near-cure in patients with Gadolinium deposition disease undergoing intravenous DTPA chelation 接受静脉 DTPA 螯合治疗的钆沉积病患者几近痊愈
IF 3.6 Q2 TOXICOLOGY Pub Date : 2024-07-25 DOI: 10.3389/ftox.2024.1371131
R. Semelka, M. Ramalho
To demonstrate and evaluate factors contributing to near-cures in patients with Gadolinium Deposition Disease (GDD) undergoing intravenous (IV) DTPA chelation.Patients who had undergone or are currently undergoing DTPA chelation for GDD were included in this report based on their medical records that showed their perceived improvement was at least 80% back to normal. A survey was developed that included factors commonly reported by patients treated in one clinic to determine if these ‘near-cured’ (pre-MRI baseline health) individuals possessed certain factors and lacked others. The anonymized survey was emailed to these individuals by the principal treating physician, the only investigator not blinded to the subjects. This report describes clinical documentation of patient status and their underlying factors in individuals treated by the primary author, and no research was performed. The survey was sent to sixteen individuals; Fourteen patients completed it (10 females; 41.1 ± 11.2 y/o).The most common factor was the administration of ≤5 lifetime doses of a Gadolinium-Based Contrast Agents (GBCA) (12/14). Unconfounded agents triggering GDD were seen in nine subjects. Most subjects (12/14) initiated chelation in the first year after the causative GBCA, and most (11/14) underwent ≤10 chelations with DTPA. Good healthcare status prior to MRI was observed in 5 subjects. The majority (11/14) described their immune status as strong. Severe physical disability prior to chelation was seen in 1.Subjects with GDD can experience near-cure with IV DTPA chelation. Factors surveyed that predict near-cure include the start of chelation in the first year, few GBCA administrations, and good health status before MRI with GBCA injection. Nonetheless, a few patients with predictors of less successful outcomes still experienced near-cure.
本报告的研究对象包括接受过或正在接受 DTPA 螯合治疗的钆沉积症(GDD)患者,依据是他们的医疗记录显示,他们认为自己的病情至少有 80% 已恢复正常。为了确定这些 "濒临痊愈"(MRI 前的基线健康状况)的患者是否具备某些因素而缺乏其他因素,我们制定了一项调查,其中包括在一家诊所接受治疗的患者通常报告的因素。匿名调查表由主治医师通过电子邮件发送给这些人,主治医师是唯一一位对受试者没有盲法的研究人员。本报告描述了由主要作者治疗的个人的患者状态及其潜在因素的临床记录,并未进行任何研究。最常见的因素是终生使用钆基造影剂(GBCA)的剂量≤5 次(12/14)。有 9 名受试者使用了引发 GDD 的不明药物。大多数受试者(12/14)在使用致病 GBCA 后的第一年开始接受螯合治疗,大多数受试者(11/14)接受了≤10 次 DTPA 螯合治疗。有 5 名受试者在磁共振成像前健康状况良好。大多数受试者(11/14)称其免疫状况良好。1名受试者在螯合前有严重的肢体残疾。据调查,预测接近痊愈的因素包括第一年开始螯合、GBCA用药次数少以及注射GBCA进行核磁共振成像前健康状况良好。尽管如此,仍有少数预示疗效不佳的患者濒临痊愈。
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引用次数: 0
Diesel exhaust particles alter mitochondrial bioenergetics and cAMP producing capacity in human bronchial epithelial cells 柴油废气颗粒改变人支气管上皮细胞线粒体生物能和 cAMP 生成能力
IF 3.6 Q2 TOXICOLOGY Pub Date : 2024-07-25 DOI: 10.3389/ftox.2024.1412864
I. Cattani-Cavalieri, Marina Trombetta-Lima, Hong Yan, Ana L. Manzano-Covarrubias, H. Baarsma, Asmaa Oun, Melissa Mol van der Veen, Emily Oosterhout, Amalia M. Dolga, R. Ostrom, S. Valença, Martina Schmidt
Introduction: Air pollution from diesel combustion is linked in part to the generation of diesel exhaust particles (DEP). DEP exposure induces various processes, including inflammation and oxidative stress, which ultimately contribute to a decline in lung function. Cyclic AMP (cAMP) signaling is critical for lung homeostasis. The impact of DEP on cAMP signaling is largely unknown.Methods: We exposed human bronchial epithelial (BEAS-2B) cells to DEP for 24–72 h and evaluated mitochondrial bioenergetics, markers of oxidative stress and inflammation and the components of cAMP signaling. Mitochondrial bioenergetics was measured at 72 h to capture the potential and accumulative effects of prolonged DEP exposure on mitochondrial function.Results: DEP profoundly altered mitochondrial morphology and network integrity, reduced both basal and ATP-linked respiration as well as the glycolytic capacity of mitochondria. DEP exposure increased gene expression of oxidative stress and inflammation markers such as interleukin-8 and interleukin-6. DEP significantly affected mRNA levels of exchange protein directly activated by cAMP-1 and -2 (Epac1, Epac2), appeared to increase Epac1 protein, but left phospho-PKA levels unhanged. DEP exposure increased A-kinase anchoring protein 1, β2‐adrenoceptor and prostanoid E receptor subtype 4 mRNA levels. Interestingly, DEP decreased mRNA levels of adenylyl cyclase 9 and reduced cAMP levels stimulated by forskolin (AC activator), fenoterol (β2-AR agonist) or PGE2 (EPR agonist).Discussion: Our findings suggest that DEP induces mitochondrial dysfunction, a process accompanied by oxidative stress and inflammation, and broadly dampens cAMP signaling. These epithelial responses may contribute to lung dysfunction induced by air pollution exposure.
导言:柴油燃烧造成的空气污染部分与柴油废气微粒(DEP)的产生有关。接触柴油机废气微粒会诱发各种过程,包括炎症和氧化应激,最终导致肺功能下降。环磷酸腺苷(cAMP)信号传导对肺的平衡至关重要。DEP对cAMP信号转导的影响尚不清楚:我们将人支气管上皮细胞(BEAS-2B)暴露于 DEP 24-72 小时,并评估了线粒体生物能、氧化应激和炎症指标以及 cAMP 信号转导的成分。线粒体生物能在 72 小时后进行测量,以捕捉长期暴露于 DEP 对线粒体功能的潜在和累积效应:结果:DEP 严重改变了线粒体的形态和网络完整性,降低了线粒体的基础呼吸和 ATP 链接呼吸以及糖酵解能力。暴露于DEP会增加氧化应激和炎症标志物(如白细胞介素-8和白细胞介素-6)的基因表达。DEP明显影响了由cAMP直接激活的交换蛋白-1和-2(Epac1和Epac2)的mRNA水平,似乎增加了Epac1蛋白,但磷酸-PKA水平未受影响。暴露于 DEP 会增加 A 激酶锚定蛋白 1、β2-肾上腺素受体和前列腺素 E 受体亚型 4 的 mRNA 水平。有趣的是,在福斯可林(AC 激活剂)、非诺特罗(β2-AR 激动剂)或 PGE2(EPR 激动剂)的刺激下,DEP 降低了腺苷酸环化酶 9 的 mRNA 水平,并降低了 cAMP 水平:我们的研究结果表明,DEP 会诱导线粒体功能障碍,这一过程伴随着氧化应激和炎症,并广泛抑制 cAMP 信号传导。这些上皮反应可能是空气污染暴露诱发肺功能障碍的原因之一。
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引用次数: 0
Characterization of a human thyroid microtissue model for testing thyroid disrupting chemicals 用于检测甲状腺干扰化学物的人体甲状腺微组织模型的特征描述
IF 3.6 Q2 TOXICOLOGY Pub Date : 2024-07-24 DOI: 10.3389/ftox.2024.1408808
E. Rogers, E. K. Breathwaite, T. Nguyen-Jones, S. M. Anderson, J. Odanga, D. T. Parks, K. Wolf, T. Stone, P. Balbuena, J. Chen, S. Presnell, J. R. Weaver, E. LeCluyse
Perturbation of thyroid hormone (T4) synthesis is known to cause numerous developmental, metabolic, and cognitive disorders in humans. Due to species differences in sensitivity to chemical exposures, there is a need for human-based in vitro approaches that recapitulate thyroid cellular architecture and T4 production when screening. To address these limitations, primary human thyrocytes, isolated from healthy adult donor tissues and cryopreserved at passage one (p’1) were characterized for cellular composition, 3D follicular architecture, and thyroglobulin (TG)/T4 expression and inhibition by prototype thyroid disrupting chemicals (TDC). Flow analysis of the post-thaw cell suspension showed >80% EpCAM-positive cells with 10%–50% CD90-positive cells. When seeded onto 96-well Matrigel®-coated plates and treated with bovine thyroid stimulating hormone (TSH), thyrocytes formed 3D microtissues during the initial 4–5 days of culture. The microtissues exhibited a stable morphology and size over a 14-day culture period. TG and T4 production were highest in microtissues when the proportion of CD90-positive cells, seeding density and thyroid stimulating hormone concentrations were between 10%–30%, 6K–12K cells per well, and 0.03–1 mIU/mL, respectively. At maximal TG and T4 production levels, average microtissue diameters ranged between 50 and 200 µm. The T4 IC50 values for two prototype TPO inhibitors, 6-propyl-2-thiouracil and methimazole, were ∼0.7 µM and ∼0.5 µM, respectively, in microtissue cultures treated between days 9 and 14. Overall, p’1 cryopreserved primary human thyrocytes in 3D microtissue culture represent a promising new model system to prioritize potential TDC acting directly on the thyroid as part of a weight-of-evidence hazard characterization.
众所周知,甲状腺激素(T4)合成紊乱会导致人类出现多种发育、代谢和认知障碍。由于物种对化学品暴露的敏感性存在差异,因此在筛选时需要基于人类的体外方法来重现甲状腺细胞结构和 T4 的产生。为了解决这些局限性,研究人员从健康的成人供体组织中分离出原代人类甲状腺细胞,并将其冷冻保存到第一周期(p'1),研究了细胞组成、三维滤泡结构、甲状腺球蛋白(TG)/T4 的表达以及原型甲状腺干扰化学物(TDC)的抑制作用。对解冻后细胞悬浮液的流式分析表明,EpCAM 阳性细胞超过 80%,CD90 阳性细胞占 10%-50%。将甲状腺细胞播种到 96 孔 Matrigel® 涂层板上并用牛促甲状腺激素(TSH)处理后,在最初 4-5 天的培养过程中形成了三维微组织。在 14 天的培养期内,微组织的形态和大小保持稳定。当CD90阳性细胞比例、播种密度和促甲状腺激素浓度分别为10%-30%、每孔6K-12K个细胞和0.03-1 mIU/mL时,微组织中的TG和T4产量最高。在最大 TG 和 T4 生成水平下,微组织平均直径在 50 到 200 µm 之间。在第 9 天和第 14 天处理的微组织培养物中,两种原型 TPO 抑制剂 6-丙基-2-硫脲嘧啶和甲巯咪唑的 T4 IC50 值分别为 0.7 µM 和 0.5 µM。总之,在三维微组织培养中冷冻保存的p'1原代人类甲状腺细胞是一种很有前景的新模型系统,可作为证据权重危害特征描述的一部分,对直接作用于甲状腺的潜在TDC进行优先排序。
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引用次数: 0
An insight into carcinogenic activity and molecular mechanisms of Bis(2-ethylhexyl) phthalate 对邻苯二甲酸二(2-乙基己酯)致癌活性和分子机制的深入研究
IF 3.6 Q2 TOXICOLOGY Pub Date : 2024-07-23 DOI: 10.3389/ftox.2024.1389160
Gelsomina Pillo, Federico Aldrovandi, Ada Mescoli, Giangabriele Maffei, M. Mascolo, Monica Vaccari, A. Colacci
Di(ethylhexyl) phthalate (DEHP) is a ubiquitous environmental contaminant to which humans are exposed via multiple routes. Human health risk assessments for this substance have recently been updated, focusing on reproductive toxicity, including DEHP, in the list of chemicals classified as carcinogenic, mutagenic, or toxic to reproduction (CMR). Moreover, DEHP has also been defined as probably and possibly carcinogenic to humans based on its carcinogenicity in rodents. However, the mechanism of action of DEHP and its relevance in humans remain unclear. Rodent data suggests that DEHP induces cancer through non-genotoxic mechanisms related to multiple molecular signals, including PPARα activation, perturbation of fatty acid metabolism, induction of cell proliferation, decreased apoptosis, production of reactive oxygen species, and oxidative stress. According to the DEHP toxicological dataset, several in vitro cell transformation assays have been performed using different protocols and cellular models to produce different results. This study aimed to evaluate the carcinogenic potential of DEHP by using the A31-1-1 BALB/c-3T3 cell line in a standard cell transformation assay. Additionally, transcriptomic analysis was performed to explore the molecular responses and identify the affected toxicological pathways. Although DEHP treatment did not induce transformation in BALB/c-3T3 cells, the transcriptomic results revealed significant modulation of several pathways associated with DEHP metabolism, tissue-specific functions related to systemic metabolism, and basal cellular signaling with pleiotropic outcomes. Among these signaling pathways, modulation of cell-regulating signaling pathways, such as Notch, Wnt, and TGF-β, can be highlighted. More specific modulation of such genes and pathways with double functions in metabolism and neurophysiology underlies the well-known crosstalk that may be crucial for the mechanism of action of DEHP. Our findings offer evidence to support the notion that these models are effective in minimizing the use of animal testing for toxicity assessment.
邻苯二甲酸二(乙基己基)酯(DEHP)是一种无处不在的环境污染物,人类会通过多种途径接触到它。最近对这种物质的人类健康风险评估进行了更新,重点关注其生殖毒性,并将 DEHP 列入致癌、诱变或生殖毒性(CMR)化学品清单。此外,根据 DEHP 对啮齿动物的致癌性,DEHP 也被定义为可能或可能对人类致癌。然而,DEHP 的作用机理及其与人类的相关性仍不清楚。嚙齒動物的數據顯示,DEHP 會透過與多種分子訊號有關的非基因毒性機制誘發癌症,包括 PPARα 啟動、脂肪酸新陳代謝紊亂、誘導細胞增殖、減少細胞凋亡、產生活性氧和氧化應激。根据 DEHP 毒理学数据集,采用不同的方案和细胞模型进行了多项体外细胞转化试验,得出了不同的结果。本研究旨在使用标准细胞转化试验中的 A31-1-1 BALB/c-3T3 细胞系来评估 DEHP 的致癌潜力。此外,还进行了转录组分析,以探索分子反应并确定受影响的毒理学途径。虽然DEHP处理并未诱导BALB/c-3T3细胞发生转化,但转录组结果显示,与DEHP代谢相关的几种通路、与全身代谢相关的组织特异性功能以及具有多效应果的基础细胞信号传导都受到了显著的调节。在这些信号通路中,Notch、Wnt 和 TGF-β 等细胞调控信号通路的调节作用尤为突出。对这些在新陈代谢和神经生理学中具有双重功能的基因和通路进行更具体的调节,是众所周知的串扰的基础,而串扰可能对 DEHP 的作用机制至关重要。我们的研究结果证明,这些模型可以有效地减少毒性评估中动物试验的使用。
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引用次数: 0
Protocols for isolation and characterization of nanoparticle biomolecular corona complexes 纳米粒子生物分子电晕复合物的分离和表征规程
IF 3.6 Q2 TOXICOLOGY Pub Date : 2024-07-23 DOI: 10.3389/ftox.2024.1393330
Mahmoud G. Soliman, Alberto Martinez-Serra, Marko Dobricic, Duong N. Trinh, Jack Cheeseman, Daniel I R Spencer, M. Monopoli
Engineered nanoparticles (NPs) pose a broad spectrum of interesting properties that make them useful for many applications. However, continuous exposure to NPs requires the need to deeply understand the outcomes when these NPs interact with different biological environments. After exposure within (to) these environments, the pristine surfaces of NPs strongly interact with the molecules from the surrounding medium, including metabolites, lipids, glycan, and proteins, forming the so-called protein corona (PC). It is well established that the NP-PC strongly influences the biological fate of various NPs types, including cellular uptake, toxicity, and biodistribution. Thus, for a proper assessment of potential hazards associated with engineered NPs, it is mandatory to study and evaluate the PC that forms around NPs. Herein, we describe protocols in detail for the isolation and characterization of NP-PC complexes and cover the following aspects: 1) isolation protocols for different nanomaterials in a range of exposing media, including magnetic isolation methods for superparamagnetic NPs, 2) NP physico-chemical characterization using advanced and standard techniques available in regular laboratories, and 3) NP- PC characterization of the protein and glycan components.
工程纳米粒子(NPs)具有广泛的有趣特性,可用于多种应用。然而,由于需要持续接触 NPs,因此需要深入了解这些 NPs 与不同生物环境相互作用的结果。暴露在这些环境中后,NPs 的原始表面会与周围介质中的分子(包括代谢物、脂类、糖类和蛋白质)发生强烈的相互作用,形成所谓的蛋白质电晕(PC)。NP-PC 对各种类型 NPs 的生物学命运(包括细胞摄取、毒性和生物分布)有很大影响,这一点已得到公认。因此,为了正确评估与工程 NPs 相关的潜在危害,必须对 NPs 周围形成的 PC 进行研究和评估。在此,我们将详细介绍 NP-PC 复合物的分离和表征方案,包括以下几个方面:1) 不同纳米材料在一系列暴露介质中的分离规程,包括超顺磁性 NP 的磁性分离方法;2) 使用常规实验室可用的先进和标准技术进行 NP 物理化学表征;3) 蛋白质和聚糖成分的 NP- PC 表征。
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引用次数: 0
Transforming environmental health datasets from the comparative toxicogenomics database into chord diagrams to visualize molecular mechanisms 将比较毒物基因组学数据库中的环境健康数据集转化为和弦图,使分子机制可视化
IF 3.6 Q2 TOXICOLOGY Pub Date : 2024-07-22 DOI: 10.3389/ftox.2024.1437884
Brent Wyatt, A. P. Davis, Thomas C. Wiegers, Jolene Wiegers, Sakib Abrar, D. Sciaky, Fern Barkalow, Melissa Strong, C. Mattingly
In environmental health, the specific molecular mechanisms connecting a chemical exposure to an adverse endpoint are often unknown, reflecting knowledge gaps. At the public Comparative Toxicogenomics Database (CTD; https://ctdbase.org/), we integrate manually curated, literature-based interactions from CTD to compute four-unit blocks of information organized as a potential step-wise molecular mechanism, known as “CGPD-tetramers,” wherein a chemical interacts with a gene product to trigger a phenotype which can be linked to a disease. These computationally derived datasets can be used to fill the gaps and offer testable mechanistic information. Users can generate CGPD-tetramers for any combination of chemical, gene, phenotype, and/or disease of interest at CTD; however, such queries typically result in the generation of thousands of CGPD-tetramers. Here, we describe a novel approach to transform these large datasets into user-friendly chord diagrams using R. This visualization process is straightforward, simple to implement, and accessible to inexperienced users that have never used R before. Combining CGPD-tetramers into a single chord diagram helps identify potential key chemicals, genes, phenotypes, and diseases. This visualization allows users to more readily analyze computational datasets that can fill the exposure knowledge gaps in the environmental health continuum.
在环境健康领域,化学品暴露与不良终点之间的具体分子机制往往是未知的,这反映了知识上的差距。在公共比较毒物基因组学数据库(CTD; https://ctdbase.org/)中,我们整合了 CTD 中人工编辑的、基于文献的相互作用,计算出四个单位的信息块,作为潜在的逐步分子机制,即 "CGPD-tetramers",其中一种化学品与一种基因产物相互作用,引发一种表型,而这种表型可以与疾病联系起来。这些计算得出的数据集可以用来填补空白,提供可检验的机理信息。用户可以在 CTD 上为感兴趣的化学物质、基因、表型和/或疾病的任何组合生成 CGPD-四聚体;但是,这种查询通常会生成数千个 CGPD-四聚体。在这里,我们介绍了一种使用 R 将这些大型数据集转化为用户友好和弦图的新方法。这种可视化过程简单明了、易于实现,而且从未使用过 R 的无经验用户也可以使用。将 CGPD 四聚体组合成单个弦图有助于识别潜在的关键化学物质、基因、表型和疾病。这种可视化方法可以让用户更轻松地分析计算数据集,从而填补环境健康连续体中暴露知识的空白。
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引用次数: 0
Diverse PFAS produce unique transcriptomic changes linked to developmental toxicity in zebrafish 多种全氟辛烷磺酸会产生与斑马鱼发育毒性有关的独特转录组变化
IF 3.6 Q2 TOXICOLOGY Pub Date : 2024-07-22 DOI: 10.3389/ftox.2024.1425537
Yvonne Rericha, Lindsey St. Mary, Lisa Truong, Ryan McClure, J. K. Martin, Scott W. Leonard, Preethi Thunga, Michael T. Simonich, Katrina M. Waters, Jennifer A. Field, R. Tanguay
Per- and polyfluoroalkyl substances (PFAS) are a widespread and persistent class of contaminants posing significant environmental and human health concerns. Comprehensive understanding of the modes of action underlying toxicity among structurally diverse PFAS is mostly lacking. To address this need, we recently reported on our application of developing zebrafish to evaluate a large library of PFAS for developmental toxicity. In the present study, we prioritized 15 bioactive PFAS that induced significant morphological effects and performed RNA-sequencing to characterize early transcriptional responses at a single timepoint (48 h post fertilization) after early developmental exposures (8 h post fertilization). Internal concentrations of 5 of the 15 PFAS were measured from pooled whole fish samples across multiple timepoints between 24–120 h post fertilization, and additional temporal transcriptomics at several timepoints (48–96 h post fertilization) were conducted for Nafion byproduct 2. A broad range of differentially expressed gene counts were identified across the PFAS exposures. Most PFAS that elicited robust transcriptomic changes affected biological processes of the brain and nervous system development. While PFAS disrupted unique processes, we also found that similarities in some functional head groups of PFAS were associated with the disruption in expression of similar gene sets. Body burdens after early developmental exposures to select sulfonic acid PFAS, including Nafion byproduct 2, increased from the 24–96 h post fertilization sampling timepoints and were greater than those of sulfonamide PFAS of similar chain lengths. In parallel, the Nafion byproduct 2-induced transcriptional responses increased between 48 and 96 h post fertilization. PFAS characteristics based on toxicity, transcriptomic effects, and modes of action will contribute to further prioritization of PFAS structures for testing and informed hazard assessment.
全氟烷基和多氟烷基物质(PFAS)是一类广泛存在且具有持久性的污染物,对环境和人类健康造成了重大影响。目前还缺乏对结构各异的全氟烷基化合物毒性作用模式的全面了解。为了满足这一需求,我们最近报告了我们应用斑马鱼来评估大量 PFAS 的发育毒性。在本研究中,我们优先选择了 15 种能诱导显著形态学效应的生物活性全氟辛烷磺酸,并在早期发育暴露(受精后 8 小时)后的单一时间点(受精后 48 小时)进行了 RNA 序列分析,以确定早期转录反应的特征。在受精后 24-120 小时之间的多个时间点,从汇集的全鱼样本中测定了 15 种 PFAS 中 5 种的内部浓度,并在多个时间点(受精后 48-96 小时)对 Nafion 副产品 2 进行了额外的时间转录组学研究。在各种全氟辛烷磺酸暴露中发现了大量差异表达基因。大多数引起强大转录组变化的 PFAS 影响了大脑和神经系统发育的生物过程。虽然全氟辛烷磺酸破坏了独特的过程,但我们也发现,全氟辛烷磺酸的某些功能头组的相似性与相似基因组表达的破坏有关。在发育早期接触特定磺酸类全氟辛烷磺酸(包括纳菲昂副产物2)后,体内负荷在受精后24-96小时采样时间点增加,且高于链长相似的磺酰胺类全氟辛烷磺酸。与此同时,Nafion 副产品 2 诱导的转录反应在施肥后 48 至 96 小时内也有所增加。基于毒性、转录组效应和作用模式的全氟辛烷磺酸特性将有助于进一步确定全氟辛烷磺酸结构的优先次序,以便进行测试和知情危害评估。
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引用次数: 0
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Frontiers in toxicology
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