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NLRP inflammasomes in health and disease 健康与疾病中的 NLRP 炎症体
IF 4 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-04-22 DOI: 10.1186/s43556-024-00179-x
Zhihao Xu, Arnaud John Kombe Kombe, Shasha Deng, Hongliang Zhang, Songquan Wu, Jianbin Ruan, Ying Zhou, Tengchuan Jin
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引用次数: 0
Understanding PI3K/Akt/mTOR signaling in squamous cell carcinoma: mutated PIK3CA as an example 了解鳞状细胞癌中的 PI3K/Akt/mTOR 信号传导:以突变的 PIK3CA 为例
IF 4 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-04-15 DOI: 10.1186/s43556-024-00176-0
Shutao Zheng, Shuo He, Yan Liang, Yiyi Tan, Qing Liu, Tao Liu, Xiaomei Lu
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引用次数: 0
Chromatin modifiers in human disease: from functional roles to regulatory mechanisms 人类疾病中的染色质修饰因子:从功能作用到调控机制
IF 4 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-04-08 DOI: 10.1186/s43556-024-00175-1
Yali Nie, Chao Song, Hong Huang, Shuqing Mao, Kai Ding, Huifang Tang
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引用次数: 0
Correction: annexin A5-DM1 protein-drug conjugate for the treatment of triple-negative breast cancer. 更正:用于治疗三阴性乳腺癌的附件蛋白 A5-DM1 蛋白-药物共轭物。
IF 4 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-04-02 DOI: 10.1186/s43556-024-00180-4
Alexis Woodward, Benjamin Southard, Sampurna Chakraborty, Aaron O Bailey, Gabriela N F Faria, Patrick McKernan, Wajeeha Razaq, Roger G Harrison
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引用次数: 0
Fat mass and obesity-associated protein (FTO) mediated m6A modification of circFAM192A promoted gastric cancer proliferation by suppressing SLC7A5 decay. 脂肪量和肥胖相关蛋白(FTO)介导的circFAM192A的m6A修饰通过抑制SLC7A5衰变促进胃癌增殖。
IF 4 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-04-01 DOI: 10.1186/s43556-024-00172-4
Xi Wu, Yuan Fang, Yunru Gu, Haoyang Shen, Yangyue Xu, Tingting Xu, Run Shi, Duo Xu, Jingxin Zhang, Kai Leng, Yongqian Shu, Pei Ma

Gastric cancer (GC) is a common malignant tumor worldwide, especially in East Asia, with high incidence and mortality rate. Epigenetic modifications have been reported to participate in the progression of gastric cancer, among which m6A is the most abundant and important chemical modification in RNAs. Fat mass and obesity-associated protein (FTO) is the first identified RNA demethylase but little is known about its role in gastric cancer. In our study, data from TCGA and clinical samples showed that FTO was highly expressed in gastric cancer tissues. Kaplan-Meier plotter suggested that patients with the high level of FTO had a poor prognosis. In vitro and in vivo experiments confirmed the role of FTO in promoting gastric cancer cell proliferation. Mechanistically, we found that FTO bound to circFAM192A at the specific site and removed the m6A modification in circFAM192A, protecting it from degradation. CircFAM192A subsequently interacted with the leucine transporter solute carrier family 7 member 5 (SLC7A5) and enhancing its stability. As a result, an increased amount of SLC7A5 was on the membrane, which facilitated leucine uptake and activated the mTOR signaling pathway. Therefore, our study demonstrated that FTO promoted gastric cancer proliferation through the circFAM192A/SLC7A5 axis in the m6A-dependent manner. Our study shed new light on the role of FTO in gastric cancer progression.

胃癌(GC)是世界上常见的恶性肿瘤,尤其是在东亚地区,发病率和死亡率都很高。据报道,表观遗传修饰参与了胃癌的进展,其中 m6A 是 RNA 中最丰富、最重要的化学修饰。脂肪量与肥胖相关蛋白(FTO)是第一个被发现的RNA去甲基化酶,但人们对其在胃癌中的作用知之甚少。在我们的研究中,来自 TCGA 和临床样本的数据显示,FTO 在胃癌组织中高表达。Kaplan-Meier plotter表明,FTO水平高的患者预后较差。体外和体内实验证实了 FTO 在促进胃癌细胞增殖中的作用。从机理上讲,我们发现 FTO 在特定位点与 circFAM192A 结合,并去除 circFAM192A 中的 m6A 修饰,使其免于降解。随后,circFAM192A 与亮氨酸转运体溶质运载家族 7 成员 5(SLC7A5)相互作用,增强了其稳定性。结果,膜上的 SLC7A5 数量增加,促进了亮氨酸的摄取并激活了 mTOR 信号通路。因此,我们的研究表明,FTO通过circFAM192A/SLC7A5轴以m6A依赖的方式促进了胃癌的增殖。我们的研究为 FTO 在胃癌进展中的作用提供了新的线索。
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引用次数: 0
Manipulating mitochondrial electron flow: a novel approach to enhance tumor immunogenicity. 操纵线粒体电子流:增强肿瘤免疫原性的新方法
IF 4 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-03-20 DOI: 10.1186/s43556-024-00171-5
Junyu Wang, Anren Zhang, Min Wu, Shugang Qin
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引用次数: 0
mTOR inhibitor reduces nontumour-related death in liver transplantation for hepatocellular carcinoma. mTOR 抑制剂可减少肝细胞癌肝移植中的非肿瘤相关死亡。
IF 4 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-03-10 DOI: 10.1186/s43556-024-00170-6
Lincheng Zhang, Peng Liu, Li Zhuang, Sunbin Ling, Qifan Zhan, Wei Zhou, Renyi Su, Lu Yin, Qingyang Que, Jiachen Hong, Jiaqi Bao, Chuxiao Shao, Jinzhen Cai, Shusen Zheng, Xiao Xu

Sirolimus is a regularly applied immunosuppressant for patients undergoing liver transplantation (LT) for hepatocellular carcinoma (HCC). Sirolimus not only significantly inhibits HCC recurrence but also protects renal function. However, the improvement effect of sirolimus on nontumour-related death in patients is still unknown. The aim of our study was to investigate the therapeutic effect of sirolimus on nontumour-related deaths. In this study, we retrospectively enrolled 403 LT patients with HCC from January 1, 2015, to December 31, 2018. The median follow-up time was 47.1 months. The patients were divided into the sirolimus group (N = 184) and the sirolimus-free group (N = 219). There were no significant differences between the sirolimus group and the sirolimus-free group in survival (P = 0.054). In transplant patients who exceeded the Milan or Hangzhou criteria, the sirolimus group achieved higher survival than the sirolimus-free group (P = 0.005; P = 0.02). Moreover, multivariate analysis showed that sirolimus strongly reduced the hazard ratio (HR) for nontumour-related death in LT patients who exceeded the Milan (HR: 0.42; 95% CI: 0.18-1; P = 0.05) or Hangzhou criteria (HR: 0.26; 95% CI: 0.08-0.89; P = 0.032). HCC recurrence increased the risk of nontumour-related death. In conclusion, sirolimus-based immunosuppression can significantly reduce nontumour-related death in LT patients who exceed the criteria for transplantation. In addition, this finding will further promote the application of sirolimus after liver transplantation for hepatocellular carcinoma.

西罗莫司是肝细胞癌(HCC)肝移植(LT)患者常用的免疫抑制剂。西罗莫司不仅能明显抑制 HCC 复发,还能保护肾功能。然而,西罗莫司对患者非肿瘤相关死亡的改善作用仍是未知数。我们的研究旨在探讨西罗莫司对非肿瘤相关死亡的治疗效果。在这项研究中,我们回顾性地纳入了自2015年1月1日至2018年12月31日的403例LT HCC患者。中位随访时间为 47.1 个月。患者被分为西罗莫司组(N = 184)和无西罗莫司组(N = 219)。西罗莫司组和不含西罗莫司组的存活率无明显差异(P = 0.054)。在超过米兰或杭州标准的移植患者中,西罗莫司组的存活率高于无西罗莫司组(P = 0.005; P = 0.02)。此外,多变量分析显示,西罗莫司大大降低了超过米兰标准(HR:0.42;95% CI:0.18-1;P = 0.05)或杭州标准(HR:0.26;95% CI:0.08-0.89;P = 0.032)的LT患者非肿瘤相关死亡的危险比(HR)。HCC复发增加了非肿瘤相关死亡的风险。总之,基于西罗莫司的免疫抑制可显著降低超过移植标准的LT患者的非肿瘤相关死亡。此外,这一发现将进一步促进西罗莫司在肝细胞癌肝移植术后的应用。
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引用次数: 0
Structural and functional insights of NINJ1 in plasma membrane rupture during cell death. 细胞死亡过程中质膜破裂过程中 NINJ1 的结构和功能研究。
IF 6.3 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-03-01 DOI: 10.1186/s43556-023-00169-5
Chehao Lee, Yuqing Liang, Yang Li
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引用次数: 0
Annexin A5-DM1 protein-drug conjugate for the treatment of triple-negative breast cancer. 用于治疗三阴性乳腺癌的 Annexin A5-DM1 蛋白-药物共轭物。
IF 4 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-02-19 DOI: 10.1186/s43556-023-00167-7
Alexis Woodward, Benjamin Southard, Sampurna Chakraborty, Aaron O Bailey, Gabriela N F Faria, Patrick McKernan, Wajeeha Razaq, Roger G Harrison
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引用次数: 0
Patient-derived organoids in human cancer: a platform for fundamental research and precision medicine. 人类癌症中源自患者的器官组织:基础研究和精准医疗的平台。
IF 6.3 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-02-12 DOI: 10.1186/s43556-023-00165-9
Shanqiang Qu, Rongyang Xu, Guozhong Yi, Zhiyong Li, Huayang Zhang, Songtao Qi, Guanglong Huang

Cancer is associated with a high degree of heterogeneity, encompassing both inter- and intra-tumor heterogeneity, along with considerable variability in clinical response to common treatments across patients. Conventional models for tumor research, such as in vitro cell cultures and in vivo animal models, demonstrate significant limitations that fall short of satisfying the research requisites. Patient-derived tumor organoids, which recapitulate the structures, specific functions, molecular characteristics, genomics alterations and expression profiles of primary tumors. They have been efficaciously implemented in illness portrayal, mechanism exploration, high-throughput drug screening and assessment, discovery of innovative therapeutic targets and potential compounds, and customized treatment regimen for cancer patients. In contrast to conventional models, tumor organoids offer an intuitive, dependable, and efficient in vitro research model by conserving the phenotypic, genetic diversity, and mutational attributes of the originating tumor. Nevertheless, the organoid technology also confronts the bottlenecks and challenges, such as how to comprehensively reflect intra-tumor heterogeneity, tumor microenvironment, tumor angiogenesis, reduce research costs, and establish standardized construction processes while retaining reliability. This review extensively examines the use of tumor organoid techniques in fundamental research and precision medicine. It emphasizes the importance of patient-derived tumor organoid biobanks for drug development, screening, safety evaluation, and personalized medicine. Additionally, it evaluates the application of organoid technology as an experimental tumor model to better understand the molecular mechanisms of tumor. The intent of this review is to explicate the significance of tumor organoids in cancer research and to present new avenues for the future of tumor research.

癌症具有高度的异质性,包括肿瘤间和肿瘤内的异质性,而且不同患者对普通治疗方法的临床反应也存在相当大的差异。传统的肿瘤研究模型,如体外细胞培养和体内动物模型,都有很大的局限性,无法满足研究要求。源自患者的肿瘤器官组织能再现原发性肿瘤的结构、特定功能、分子特征、基因组学改变和表达谱。它们在疾病描绘、机理探索、高通量药物筛选和评估、发现创新治疗靶点和潜在化合物以及为癌症患者量身定制治疗方案等方面得到了有效应用。与传统模型相比,肿瘤类器官保留了原发肿瘤的表型、遗传多样性和突变属性,是一种直观、可靠和高效的体外研究模型。然而,类器官技术也面临着瓶颈和挑战,如如何全面反映肿瘤内异质性、肿瘤微环境、肿瘤血管生成、降低研究成本、建立标准化的构建流程并保持可靠性等。本综述广泛探讨了肿瘤类器官技术在基础研究和精准医疗中的应用。它强调了源自患者的肿瘤类器官生物库对于药物开发、筛选、安全性评估和个性化医疗的重要性。此外,它还评估了类器官技术作为肿瘤实验模型的应用,以更好地了解肿瘤的分子机制。本综述旨在阐述肿瘤类器官在癌症研究中的意义,并为未来的肿瘤研究提出新的途径。
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Molecular biomedicine
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