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Development and validation of a species-specific loop-mediated isothermal amplification assay for rapid detection of Perkinsus marinus. 一种种特异性环介导的等温扩增快速检测方法的建立和验证。
IF 1.3 0 PARASITOLOGY Pub Date : 2026-01-26 DOI: 10.3347/PHD.25083
S D N K Bathige, Seung-Hyeon Kim, Donghyun Lee, Hyung-Bae Jeon, Yu Chen, Kyung-Il Park

Perkinsus marinusis a major protozoan pathogen of oysters, responsible for severe mortality events and substantial economic losses in the global aquaculture industry. Rapid, sensitive, and reliable detection of this parasite is therefore essential for effective monitoring and timely control of dermo disease outbreaks. In this study, we developed and optimized a novel loop-mediated isothermal amplification (LAMP) assay, designated Pm-LAMP, for the specific detection of P. marinus in oyster tissues. The optimized Pm-LAMP assay, employing 5 primers and performed at 67°C, demonstrated high analytical sensitivity, consistently detecting DNA concentrations as low as 40 fg/µl and enabling accurate quantification down to 0.4 pg/µl. The assay exhibited linear amplification across a wide template range from 4 ng/µl to 0.4 pg/µl, with a strong inverse correlation between template concentration and threshold time. Specificity testing confirmed exclusive amplification of P. marinus, with no cross-reactivity observed for P. olseni, P. honshuensis, or P. chesapeaki. This study represents the first LAMP assay specifically designed for the detection of P. marinus. The Pm-LAMP assay was validated using Pacific oyster tissues and cultured P. marinusisolates originating from the USA and Korea and was benchmarked against quantitative real-time PCR (qPCR). Although qPCR exhibited higher sensitivity for detecting trace DNA levels, the Pm-LAMP assay produced results within 20 min while maintaining reliable detection at low DNA concentrations. Diagnostic performance evaluation showed 100% sensitivity and 90.91% specificity, with substantial agreement with qPCR (Cohen's κ=0.811). Overall, the Pm-LAMP assay provides a rapid, robust, and field-deployable diagnostic tool for P. marinus, supporting improved disease surveillance and sustainable oyster aquaculture management.

海生弧菌是牡蛎的主要原生动物病原体,对全球水产养殖业造成严重死亡事件和重大经济损失。因此,快速、灵敏和可靠地检测这种寄生虫对于有效监测和及时控制皮肤病暴发至关重要。在这项研究中,我们开发并优化了一种新的环介导等温扩增(LAMP)方法,命名为Pm-LAMP,用于特异性检测牡蛎组织中的海洋假单胞菌。优化后的Pm-LAMP检测方法使用5个引物,在67°C下进行,具有很高的分析灵敏度,可以持续检测到低至40 fg/µl的DNA浓度,并能够精确定量至0.4 pg/µl。该方法在4 ng/µl至0.4 pg/µl的宽模板范围内呈线性扩增,模板浓度与阈值时间呈强烈的负相关。特异性测试证实了P. marinus的特异性扩增,与P. olseni, P. honshuensis或P. chesapeaki没有交叉反应。本研究是第一个专门设计用于检测海洋假单胞菌的LAMP试验。利用太平洋牡蛎组织和美国和韩国培养的海洋假单胞菌分离株验证了Pm-LAMP实验,并以实时荧光定量PCR (qPCR)为基准。虽然qPCR在检测微量DNA水平方面表现出更高的灵敏度,但Pm-LAMP检测在20分钟内产生结果,同时在低DNA浓度下保持可靠的检测。诊断性能评价的灵敏度为100%,特异性为90.91%,与qPCR基本一致(Cohen’s κ=0.811)。总体而言,Pm-LAMP检测提供了一种快速、可靠且可现场部署的诊断工具,支持改进疾病监测和可持续牡蛎养殖管理。
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引用次数: 0
Exploration of Naegleria-preferentially secreted proteins for identifying diagnostic candidates to detect Naegleria fowleri. 探索纳格里氏杆菌优先分泌蛋白,以确定诊断候选物以检测福氏纳格里氏杆菌。
IF 1.3 0 PARASITOLOGY Pub Date : 2026-01-26 DOI: 10.3347/PHD.25058
Hye-Jeong Jo, Hae-Ahm Lee, Fu-Shi Quan, Hyun-Hee Kong, Eun-Kyung Moon

Naegleria fowleri is a free-living amoeba that can cause primary amebic meningoencephalitis (PAM), a very serious infection of the central nervous system. Early diagnosis of PAM is challenging, and the condition is almost always fatal. In this study, we conducted 2-dimensional gel electrophoresis (2-DE) analysis using N. fowleri trophozoite lysates and conditioned media to identify preferentially secreted proteins. As a result of the 2-dimensional gel electrophoresis analysis, 1 protein was found to increase, 5 proteins were found to decrease, 3 proteins showed a qualitative increase, and 15 proteins showed a qualitative decrease in the conditioned media compared to the proteins in the trophozoite lysates. Using cDNA from N. fowleri, Acanthamoeba castellanii, and Balamuthia mandrillaris, all of which can cause encephalitis, real-time PCR was performed on 5 genes corresponding to the p23-like domain-containing protein, cystatin-like domain-containing protein, fowlerpain-2, hemerythrin family non-heme iron protein, and an uncharacterized protein. The results showed that all 5 genes were highly expressed in N. fowleri. In animal models infected with N. fowleri resulting in PAM, real-time PCR analysis of brain tissue revealed significant overexpression of the p23-like domain-containing protein and fowlerpain-2. These results suggest that the 2 secreted proteins could provide valuable insights for developing antibody-based or molecular diagnostic methods to detect N. fowleri in patients with PAM.

福氏奈格里虫是一种自由生活的阿米巴原虫,可引起原发性阿米巴脑膜脑炎(PAM),这是一种非常严重的中枢神经系统感染。PAM的早期诊断是具有挑战性的,而且这种情况几乎总是致命的。在这项研究中,我们使用福氏梭菌滋养体裂解物和条件培养基进行了二维凝胶电泳(2-DE)分析,以鉴定优先分泌的蛋白质。通过二维凝胶电泳分析,与滋养体裂解液中的蛋白相比,条件培养基中有1个蛋白增加,5个蛋白减少,3个蛋白质的增加,15个蛋白质的减少。利用能引起脑炎的福氏N.虫、castellanacanthamoeba castellanii和Balamuthia mandrillaris的cDNA,对p23样结构域蛋白、胱他汀样结构域蛋白、fowlerpain-2、菊酰菊酯家族非血红素铁蛋白和一个未知蛋白对应的5个基因进行了实时荧光定量PCR。结果表明,这5个基因在福氏乳杆菌中均有高表达。在感染福氏乳杆菌导致PAM的动物模型中,脑组织实时PCR分析显示p23样结构域蛋白和fowlerpain-2明显过表达。这些结果表明,这2种分泌蛋白可以为开发基于抗体或分子诊断方法检测PAM患者的福氏奈尔菌提供有价值的见解。
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引用次数: 0
Genotyping of Blastocystis species in hemodialysis patients from Makkah, Saudi Arabia. 沙特阿拉伯麦加血液透析患者囊虫种类基因分型研究。
IF 1.3 0 PARASITOLOGY Pub Date : 2026-01-19 DOI: 10.3347/PHD.25052
Hattan S Gattan, Ebtihal O Bahwaireth, Majed H Wakid, Muslimah N Alsulami, Mohammed A Al-Matary, Asmaa M El-Kady

The human gut is host to a diversity of microorganisms, including a parasite called Blastocystis. While there are increasing reports characterizing Blastocystis subtypes (STs) among healthy individuals, only a few studies have investigated the Blastocystis STs in renal or dialysis patients. This study investigates the Blastocystis prevalence and STs in hemodialysis patients. Fifty healthy controls and 100 chronic kidney disease patients undergoing dialysis participated in the study. Blastocystis infection was identified by using microscopic and molecular diagnosis using 18S rRNA-PCR. Then all positive samples were sent for sequencing to identify which ST they belong to. Phylogenetic and pairwise distance analyses were performed to confirm the validity of the STs. Thirty-four hemodialysis patients were infected with Blastocystis while 17 patients in the control were infected with the parasite. All positive samples were then confirmed using PCR. Genetic sequencing analysis subsequently revealed that 66% of Blastocystis infection belonged to ST1 and ST3 (33% each), followed by ST10 (20%), and ST6 (14%). The nucleotide sequence analysis of the 385 bp 18S rRNA gene revealed a >97% identity with previously identified Blastocystis isolates. The genetic analysis showed that the 8 identified isolates correspond to previously observed alleles. Six ST1 isolates produced a high frequency of Blastocystis isolates matching allele 4, with very low genetic divergence. ST3 isolates showed relatively increased genetic diversity and matching allele 34, which is the most common allele worldwide.

人类肠道是多种微生物的宿主,包括一种叫做囊虫的寄生虫。虽然有越来越多的报道描述了健康个体中囊虫亚型(STs)的特征,但只有少数研究调查了肾脏或透析患者中的囊虫STs。本研究探讨了血液透析患者囊虫的患病率和STs。50名健康对照者和100名接受透析治疗的慢性肾病患者参与了这项研究。采用18S rRNA-PCR技术对囊虫感染进行显微诊断和分子诊断。然后将所有阳性样本送去测序,以确定它们属于哪个ST。系统发育分析和两两距离分析证实了STs的有效性。血液透析患者感染囊虫34例,对照组感染囊虫17例。所有阳性样本然后用PCR确认。随后的基因测序分析显示,66%的囊虫感染属于ST1和ST3(各占33%),其次是ST10(20%)和ST6(14%)。对385 bp 18S rRNA基因的核苷酸序列分析显示,该基因与先前鉴定的囊胚分离物有97%的同源性。遗传分析表明,所鉴定的8个分离株与先前观察到的等位基因相对应。6株ST1分离株产生匹配等位基因4的囊胚分离株的频率较高,遗传分化程度很低。ST3分离株具有较高的遗传多样性和匹配等位基因34,这是世界上最常见的等位基因。
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引用次数: 0
Genetic polymorphisms of merozoite surface protein-1 ICB 5-6 in Vietnamese Plasmodium vivax isolates. 越南间日疟原虫分离株卵裂子表面蛋白-1 icb5 -6的遗传多态性
IF 1.3 0 PARASITOLOGY Pub Date : 2026-01-14 DOI: 10.3347/PHD.25087
Thu Hằng Nguyễn, Đăng Thùy Dương Nguyễn, Hương Giang Lê, Tuấn Cường Võ, Nguyen Thi Minh Trinh, Minkyoung Cho, Chau Van Khanh, Huynh Hong Quang, Byoung-Kuk Na

Plasmodium vivax merozoite surface protein-1 (PvMSP-1) is one of the major polymorphic markers for molecular epidemiological purposes. In particular, the interspecies conserved block 5-6 (ICB 5-6) of PvMSP-1 is a region exhibiting extensive genetic polymorphism. In this study, we analyzed polymorphic characters of the pvmsp-1 ICB 5-6 region from P. vivax isolates collected in 4 provinces of Vietnam (Dak Lak, Dak Nong, Gia Lai, and Khanh Hoa) between 2018 and 2022. A comparative analysis of pvmsp-1 ICB 5-6 sequences was also conducted between Vietnam and other endemic regions. A total of 139 pvmsp-1 ICB 5-6 sequences were obtained from 117 Vietnamese P. vivax isolates. Vietnam pvmsp-1 ICB 5-6 were clustered into 34 distinct haplotypes at the amino acid level, with the recombinant types being predominant. The pvmsp-1 ICB 5-6 from the Central Highlands, Dak Lak, Dak Nong, and Gia Lai, exhibited high genetic polymorphism, while the sequences from the South-Central region, Khanh Hoa, were less polymorphic. Highly diverse patterns of poly-glutamine (poly-Q) variants were identified in Vietnam pvmsp-1 ICB 5-6. Comparable features of genetic polymorphism were also identified in the global pvmsp-1 ICB 5-6 populations. Phylogenetic analysis of global pvmsp-1 ICB 5-6 revealed no significant country- or region-specific clustering. This study suggests that Vietnam pvmsp-1 ICB 5-6 exhibited a substantial genetic diversity with regional variations, implying the genetic heterogeneity of the Vietnamese P. vivax population. These findings emphasize the importance of continuous molecular surveillance to understand the genetic nature of the parasite in the country.

间日疟原虫merozoite surface protein-1 (PvMSP-1)是分子流行病学研究的主要多态性标记之一。特别是PvMSP-1的种间保守区5-6 (icb5 -6)是一个具有广泛遗传多态性的区域。在这项研究中,我们分析了2018 - 2022年在越南4个省(Dak ak, Dak Nong, Gia Lai和Khanh Hoa)采集的间日疟分离株pvmsp-1 ICB 5-6区域的多态性特征。对越南与其他流行地区的pvmsp-1 ICB 5-6序列进行了比较分析。从117株越南间日疟原虫分离株中共获得139个pvmsp-1 ICB 5-6序列。越南pvmsp-1 ICB 5-6在氨基酸水平上聚为34个不同的单倍型,重组型占主导地位。来自中部高原Dak Lak、Dak Nong和Gia Lai的pvmsp-1 ICB 5-6具有较高的多态性,而来自中南部Khanh Hoa地区的pvmsp-1 ICB 5-6具有较低的多态性。在越南pvmsp-1 ICB 5-6中发现了高度多样化的多谷氨酰胺(多q)变异模式。在全球pvmsp-1 ICB 5-6群体中也发现了遗传多态性的可比特征。全球pvmsp-1 ICB 5-6的系统发育分析显示没有明显的国家或地区特异性聚类。研究表明,越南pvmsp-1 ICB 5-6具有丰富的遗传多样性,存在区域差异,表明越南间日疟种群存在遗传异质性。这些发现强调了持续分子监测的重要性,以了解该国寄生虫的遗传性质。
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引用次数: 0
Identification of maternal antibodies targeting a cystatin-like protein of Trichinella spiralis in offspring. 旋毛虫子代胞抑素样蛋白母源抗体的鉴定。
IF 1.3 0 PARASITOLOGY Pub Date : 2026-01-14 DOI: 10.3347/PHD.25078
Minkyoung Cho, Hak Sun Yu

Vertical transfer of maternal antibodies can provide passive protection to offspring against specific pathogens. In this study, we detected antibodies in the sera of uninfected offspring born to chronically Trichinella spiralis-infected female mice. Immunoblotting consistently revealed a distinct band at ~38 kDa in both T. spiralis excretory-secretory products and total somatic extracts. This band was identified by MALDI-TOF/TOF mass spectrometry as a cystatin-like protein of T. spiralis (Ts-CLP). Structural modeling and domain analysis indicated a typical cystatin-like fold comprising a central α-helix and an antiparallel β-sheet core. To confirm antigen identity, recombinant Ts-CLP protein was expressed and used to generate a polyclonal anti-recombinant Ts-CLP protein antibody. This antibody specifically recognized a ~38 kDa band in T. spiralis excretory-secretory products and total somatic extracts, consistent with that detected by offspring sera. Collectively, these findings demonstrate that maternal antibodies specific to Ts-CLP are vertically transferred and detectable in uninfected offspring. Although the functional significance remains to be determined, this observation provides a basis for future studies on passive immunity and host-parasite interactions.

母体抗体的垂直转移可以为后代提供被动保护,使其免受特定病原体的侵害。在这项研究中,我们在慢性旋毛虫感染的雌性小鼠所生的未感染后代的血清中检测了抗体。免疫印迹一致显示螺旋体的排泄产物和总体提取物在~38 kDa处有明显的条带。经MALDI-TOF/TOF质谱分析,该谱带为螺旋体胱抑素样蛋白(Ts-CLP)。结构建模和结构域分析表明,这是一个典型的半胱抑素样褶皱,由一个中心α-螺旋和一个反平行的β-片核组成。为了确认抗原的身份,我们表达了重组Ts-CLP蛋白,并利用重组Ts-CLP蛋白产生了抗重组Ts-CLP蛋白的多克隆抗体。该抗体特异性识别螺旋体排泄产物和总体提取物中约38 kDa的条带,与子代血清检测结果一致。总的来说,这些发现表明,对Ts-CLP特异性的母源抗体是垂直转移的,并且在未感染的后代中可以检测到。虽然功能意义仍有待确定,但这一观察结果为未来被动免疫和宿主-寄生虫相互作用的研究提供了基础。
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引用次数: 0
First record of 3 chewing louse species from the Oriental stork (Ciconia boyciana) in Korea: Insights into conservation of co-associated species. 韩国东方鹳(Ciconia boyciana) 3种咀嚼虱的首次记录:对共亲缘种保护的见解。
IF 1.3 0 PARASITOLOGY Pub Date : 2026-01-14 DOI: 10.3347/PHD.25070
Jeong Hun Shim, Seongjun Choe, Sukyung Kim, Dongsoo Ha, Soo Hyung Eo

The Oriental stork (Ciconia boyciana Swinhoe, 1873) is an endangered species, with active restoration efforts ongoing in Korea. Despite the ecological importance of host-specific parasites, such as chewing lice (Phthiraptera), information on the chewing lice fauna associated with C. boyciana in Korea remains unclear. Previous records of 2 chewing louse species from the host have been questioned due to potential misidentification. To clarify the chewing lice fauna of the host, we conducted a survey of captive C. boyciana at Yesan Oriental Stork Park, Korea, in October 2022. Morphological identification of collected louse specimens revealed 3 species: Neophilopterus incompletes (Denny, 1842), Ardeicola ciconiae (Linnaeus, 1758) and Colpocephalum zebra Burmeister, 1838. These species are typical ectoparasites of Ciconiiform birds and represent the first verified louse records of chewing lice from C. boyciana in Korea. Unlike with a previous report, Cuclotogaster heterographus (Nitzsch, 1866) and Anaticola anseris (Linnaeus, 1758) were not detected. Our findings provide an updated checklist of chewing louse species for C. boyciana in Korea, contributing to a more accurate understanding of host-parasite associations and supporting future conservation efforts for both the host and its associated parasite fauna.

东方鹳(Ciconia boyciana Swinhoe, 1873)是一种濒危物种,在韩国正在进行积极的恢复工作。尽管咀嚼虱(Phthiraptera)等宿主特异性寄生虫具有重要的生态意义,但韩国与C. boyciana相关的咀嚼虱动物群信息尚不清楚。先前对宿主2种嚼虱的记录由于可能的误认而受到质疑。为了明确宿主的咀嚼虱区系,我们于2022年10月在韩国益山东方鹳公园对圈养的C. boyciana进行了调查。形态学鉴定发现3种:Neophilopterus in完成(Denny, 1842), Ardeicola ciconiae (Linnaeus, 1758)和Colpocephalum zebra Burmeister, 1838。这些种是典型的环锥状鸟类的体外寄生虫,代表了韩国首次证实的波氏咀嚼虱的虱子记录。与以往报道不同的是,本研究未发现异斑蛙(Cuclotogaster heterographus, Nitzsch, 1866)和Anaticola anseris (Linnaeus, 1758)。我们的研究结果为韩国的C. boyciana咀嚼虱物种提供了更新的清单,有助于更准确地了解宿主-寄生虫关联,并支持未来对宿主及其相关寄生虫动物的保护工作。
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引用次数: 0
Vaccinia virus expressing MIC8 and AMA1 provides protection against Toxoplasma gondii ME49 infection. 表达MIC8和AMA1的牛痘病毒对弓形虫ME49感染具有保护作用。
IF 1.3 0 PARASITOLOGY Pub Date : 2025-11-01 Epub Date: 2025-11-19 DOI: 10.3347/PHD.25054
Hae-Ji Kang, Yan Jin, Zhao-Shou Yang, Md Atique Ahmed, Fu-Shi Quan

Toxoplasma gondii is an intracellular protozoan parasite capable of causing chronic infection by forming persistent cysts in the brain. Despite its global burden, no approved vaccine exists. Virus-like particle vaccines expressing microneme protein 8 (MIC8) or apical membrane antigen 1 (AMA1) of T. gondii have previously shown efficacy. In this study, we generated recombinant vaccinia viruses (rVVs) expressing MIC8 and AMA1 and evaluated their efficacy against T. gondii ME49 infection. BALB/c mice were intramuscularly immunized with a combination of MIC8 and AMA1 rVVs and challenged orally with T. gondii ME49. Immunization with MIC8+AMA1 rVVs produced a significant increase in T. gondii-specific IgG. Splenocyte analysis revealed robust activation of CD4+ and CD8+ T cells, as well as expansion of memory B cells. The immunized group exhibited an 89.6% reduction in brain cyst count, with significantly improved survival compared to the control group. These findings demonstrate that combining the antigens MIC8 and AMA1 using a vaccinia virus platform can effectively promote both humoral and cellular immunity, supporting its potential as a vaccine strategy against T. gondii ME49.

刚地弓形虫是一种细胞内原生动物寄生虫,能够通过在大脑中形成持久的囊肿而引起慢性感染。尽管它给全球造成了负担,但目前还没有批准的疫苗。表达弓形虫微素蛋白8 (MIC8)或根尖膜抗原1 (AMA1)的病毒样颗粒疫苗先前已显示出有效性。在本研究中,我们制备了表达MIC8和AMA1的重组痘苗病毒(rVVs),并评估了它们对弓形虫ME49感染的效果。用MIC8和AMA1 rVVs联合肌内免疫BALB/c小鼠,并口服弓形虫ME49。用MIC8+AMA1 rvv免疫可显著增加弓形虫特异性IgG。脾细胞分析显示CD4+和CD8+ T细胞的激活,以及记忆B细胞的扩增。与对照组相比,免疫组脑囊肿计数减少89.6%,生存率显著提高。这些发现表明,使用牛痘病毒平台结合抗原MIC8和AMA1可以有效促进体液和细胞免疫,支持其作为弓形虫ME49疫苗策略的潜力。
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引用次数: 0
Complete mitogenome sequence of Caryophyllaeus brachycollis (Cestoda: Caryophyllidae) from China: Characterization and phylogenetic analyses of Caryophyllidea. 完成mitogenome序列Caryophyllaeus brachycollis(绦虫类:石竹亚纲)从中国:Caryophyllidea的描述和系统发育分析。
IF 1.3 0 PARASITOLOGY Pub Date : 2025-11-01 Epub Date: 2025-11-19 DOI: 10.3347/PHD.25044
Yi-Liu Liu, Ya Zhang, Yi-Tian Fu, Guo-Hua Liu, Hui-Mei Wang, Yuan-Ping Deng

Caryophyllaeus brachycollis mainly parasitizes the intestines of globally distributed freshwater fishes, and infection causes significant economic losses to the aquaculture industry. However, data on the molecular epidemiology, population genetics, and systematics of C. brachycollis are scarce. In this study, we sequenced the complete mitogenome of C. brachycollis isolated from Beijing, China. This circular mitogenome comprised 14,273 bp, which was 231 bp shorter than that of C. brachycollis isolated from Wuhan, China. The mitogenome contained 12 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and 2 noncoding regions. Bayesian inference revealed that C. brachycollis belonged to the family Caryophyllaeidae. The taxonomic status of C. brachycollis is controversial when based solely on morphological features. A comparative analysis of the mitogenome sequence obtained in this study revealed novel molecular markers for the accurate ascertainment of the phylogenetic position of this parasite.

短结石竹菌主要寄生于全球分布的淡水鱼的肠道,其感染给水产养殖业造成了重大的经济损失。然而,关于短支杆菌的分子流行病学、群体遗传学和系统学的资料很少。在这项研究中,我们对来自中国北京的短链短杆菌进行了完整的有丝分裂基因组测序。该环状有丝分裂基因组全长14273 bp,比武汉分离的短链大肠杆菌短231 bp。有丝分裂基因组包含12个蛋白质编码基因、22个转移RNA基因、2个核糖体RNA基因和2个非编码区。贝叶斯推断表明,短支杆菌属石竹科。单从形态学特征对短链菌的分类地位存在争议。本研究获得的有丝分裂基因组序列的比较分析揭示了准确确定该寄生虫系统发育位置的新分子标记。
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引用次数: 0
Detection of intestinal parasites in leopard cat fecal samples using shotgun metagenomics. 猎枪宏基因组法检测豹猫粪便肠道寄生虫。
IF 1.3 0 PARASITOLOGY Pub Date : 2025-11-01 Epub Date: 2025-11-19 DOI: 10.3347/PHD.25032
Jun Ho Choi, Singeun Oh, Myung-Hee Yi, Dongjun Kang, Du-Yeol Choi, Xavier Chavarria, Arwa Shatta, Yoon Hee Cho, Seongjun Choe, Seung-Hun Lee, Ju Yeong Kim

The leopard cat (Prionailurus bengalensis) is a wild felid species that serves as a reservoir of zoonotic parasites. In this study, we investigated intestinal parasite taxa by reanalyzing previously published shotgun metagenomic sequencing data from fecal samples of wild leopard cats using a custom 18S rRNA gene reference database constructed from the NCBI nucleotide database. Among 11 metagenomic samples, 5 parasite species were identified: Toxoplasma gondii, Clonorchis sinensis, Strongyloides planiceps, Cylicospirura petrowi, and Pharyngostomum cordatum. These findings demonstrate that shotgun metagenomic analysis of fecal samples can be a useful tool for monitoring zoonotic parasite infections in this species and for investigating parasite life cycles. However, this approach is limited by its dependence on existing reference databases and requires experimental validation of the findings.

豹猫(Prionailurus bengalensis)是一种野生猫科动物,是人畜共患寄生虫的储存库。在本研究中,我们利用NCBI核苷酸数据库构建的自定义18S rRNA基因参考数据库,通过重新分析先前发表的野生豹猫粪便样本的霰弹枪元基因组测序数据,研究了肠道寄生虫的分类群。在11份宏基因组样本中,共鉴定出5种寄生虫:刚地弓形虫、华支睾吸虫、平头圆线虫、石纹环螺旋体和cordatum咽口虫。这些发现表明,粪便样本的鸟枪宏基因组分析可以成为监测该物种人畜共患寄生虫感染和调查寄生虫生命周期的有用工具。然而,这种方法受限于其对现有参考数据库的依赖,并且需要对研究结果进行实验验证。
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引用次数: 0
Reconstruction of the nearly complete mitochondrial genome of a Danish isolate of Hymenolepis diminuta (Cyclophyllidea: Hymenolepididae) with extension of the noncoding region. 丹麦小膜膜绦虫(Cyclophyllidea: Hymenolepis hymenolepidia)近完整线粒体基因组的重建及非编码区扩展。
IF 1.3 0 PARASITOLOGY Pub Date : 2025-11-01 Epub Date: 2025-11-19 DOI: 10.3347/PHD.25061
Kwangjae Cho, Minkyung Kim, Yang-Kyu Choi, Won Gi Yoo

We present a nearly complete mitochondrial genome (mitogenome) of Hymenolepis diminuta from a Danish isolate, which was reassembled and comprehensively annotated using whole-genome sequencing data retrieved from the Sequence Read Archive (accession No. ERS056110). Although 2 mitogenomes of H. diminuta have previously been submitted to GenBank (accession No. AP017664, Danish isolate; NC_002767, putative German laboratory strain), the former lacks noncoding regions, while the latter harbors relatively short repeat units. Our newly reconstructed mitogenome is 14,090 bp long, comprising 12 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and a 643-bp noncoding region containing 7 tandem repeat units. The annotated sequence has been deposited in the Third Party Annotation database in GenBank (accession No. BK071817). Phylogenetic analysis based on mitogenomic sequences confirmed a close relationship between H. diminuta and Hymenolepis nana. This improved mitogenome sequence represents a valuable resource for comparative mitogenomic and phylogenetic investigations within the families Hymenolepididae, Taeniidae, and Diphyllobothriidae.

我们从丹麦分离物中获得了一个几乎完整的小膜膜绦虫线粒体基因组(有丝分裂基因组),并利用Sequence Read Archive (accession No. 5)检索的全基因组测序数据对其进行了重组和全面注释。ERS056110)。尽管先前已将H. diminuta的2个有丝分裂基因组提交给GenBank (accession No. 1)。AP017664,丹麦分离;NC_002767,假定的德国实验室菌株),前者缺乏非编码区,而后者含有相对较短的重复单元。我们新构建的有丝分裂基因组长14090 bp,包括12个蛋白质编码基因、22个转移RNA基因、2个核糖体RNA基因和一个643 bp的包含7个串联重复单元的非编码区。注释序列已存入GenBank的第三方注释数据库(accession No. 5)。BK071817)。基于有丝分裂基因组序列的系统发育分析证实了H. diminuta与nana膜膜绦虫的亲缘关系。这一改进的有丝分裂基因组序列为膜绦虫科、带绦虫科和扇叶绦虫科的有丝分裂基因组学和系统发育研究提供了宝贵的资源。
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Parasites, hosts and diseases
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