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A Point Process Model-based Framework Reveals Reinforcement Mechanisms in Striatum during High Frequency STN DBS. 基于点过程模型的框架揭示了高频STN DBS中纹状体的强化机制。
Pub Date : 2012-12-01 Epub Date: 2013-02-04 DOI: 10.1109/cdc.2012.6426098
Sabato Santaniello, John T Gale, Erwin B Montgomery, Sridevi V Sarma

Striatum is a major stage of the motor loop but, despite a pivotal role in the execution of movements, it has been poorly studied thus far under Parkinsonian conditions and Deep Brain Stimulation (DBS). We propose a computational framework to analyze the spiking activity of striatal neurons under several conditions. This framework combines point process models and single unit recordings, and separately evaluates the effects of the spiking history, DBS frequency, and other cells on the neuronal discharge pattern, thus giving a full characterization of non-stationary neuronal dynamics and inter-neuronal dependencies. We applied this framework to 166 striatal neurons collected in a monkey both at rest and during DBS (30-130 Hz). Our analysis was conducted both before and after treatment of the animal with 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP), which evoked Parkinsonian-like motor disorders. We reported that high frequency (≥100 Hz) DBS reduces non-stationary dynamics and inter-neuronal dependencies by regularizing the discharge patterns both in MPTP and normal striatum, while the combination of MPTP and low frequency (30-80 Hz) DBS enhances these features, thus suggesting that pattern regularization in striatum might contribute to the therapeutic effect of high frequency DBS and presumably results from the overlap of feed-forward and feedback activation along the motor loop (reinforcement).

纹状体是运动回路的一个主要阶段,尽管在运动执行中起着关键作用,但迄今为止在帕金森病和深部脑刺激(DBS)下对纹状体的研究很少。我们提出了一个计算框架来分析纹状体神经元在几种条件下的尖峰活动。该框架结合了点过程模型和单单元记录,并分别评估了尖峰历史、DBS频率和其他细胞对神经元放电模式的影响,从而全面表征了非平稳神经元动力学和神经元间依赖性。我们将这一框架应用于在猴子休息和DBS (30-130 Hz)期间收集的166个纹状体神经元。我们对诱发帕金森样运动障碍的1-甲基-4-苯基-1,2,3,6-四氢吡啶(MPTP)治疗前后的动物进行了分析。我们报道了高频(≥100 Hz) DBS通过规范MPTP和正常纹状体的放电模式来减少非平稳动态和神经元间依赖性,而MPTP和低频(30-80 Hz) DBS的结合增强了这些特征。因此,纹状体的模式正则化可能有助于高频DBS的治疗效果,并且可能是由于沿运动回路的前馈和反馈激活重叠(强化)。
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引用次数: 0
A Message Passing Approach to Side Chain Positioning with Applications in Protein Docking Refinement. 侧链定位的消息传递方法及其在蛋白质对接优化中的应用。
Mohammad Moghadasi, Dima Kozakov, Artem B Mamonov, Pirooz Vakili, Sandor Vajda, Ioannis Ch Paschalidis

We introduce a message-passing algorithm to solve the Side Chain Positioning (SCP) problem. SCP is a crucial component of protein docking refinement, which is a key step of an important class of problems in computational structural biology called protein docking. We model SCP as a combinatorial optimization problem and formulate it as a Maximum Weighted Independent Set (MWIS) problem. We then employ a modified and convergent belief-propagation algorithm to solve a relaxation of MWIS and develop randomized estimation heuristics that use the relaxed solution to obtain an effective MWIS feasible solution. Using a benchmark set of protein complexes we demonstrate that our approach leads to more accurate docking predictions compared to a baseline algorithm that does not solve the SCP.

介绍了一种解决侧链定位(SCP)问题的消息传递算法。SCP是蛋白质对接优化的关键组成部分,而蛋白质对接是计算结构生物学中一类重要问题的关键步骤。我们将SCP建模为一个组合优化问题,并将其表述为最大加权独立集(MWIS)问题。然后,我们采用一种改进的收敛信念传播算法来解决MWIS的松弛问题,并开发了随机估计启发式算法,使用松弛解来获得有效的MWIS可行解。使用一组蛋白质复合物的基准,我们证明了与不解决SCP的基线算法相比,我们的方法可以产生更准确的对接预测。
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引用次数: 3
Controlled Reduction of a Five-Link 3D Biped with Unactuated Yaw. 非驱动偏航的五连杆三维双足机器人控制复位。
Robert D Gregg

This paper presents a formulation of controlled geometric reduction with one degree of underactuation for mechanical systems with an unactuated cyclic variable subject to passive damping. We show that the first control term in the fully actuated case reduces to passive joint-velocity feedback, which can be equivalently provided by viscous friction. The underactuated control strategy is applied to a five-link 3D biped with a hip, torso, knees, and unactuated yaw at the foot contact point. We show asymptotically stable walking in the presence of passive yawing for realistic friction coefficients.

本文给出了具有被动阻尼的非驱动循环变量的机械系统的1度欠驱动的受控几何约简公式。结果表明,在完全驱动情况下,第一个控制项简化为被动关节-速度反馈,可以等效地由粘性摩擦提供。欠驱动控制策略应用于具有髋关节、躯干、膝盖和足部接触点非驱动偏航的五连杆3D双足机器人。对于实际的摩擦系数,我们展示了被动偏航存在下的渐近稳定行走。
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引用次数: 10
Model-on-Demand Predictive Control for Nonlinear Hybrid Systems With Application to Adaptive Behavioral Interventions. 非线性混合系统的模型-按需预测控制及其在自适应行为干预中的应用。
Naresh N Nandola, Daniel E Rivera

This paper presents a data-centric modeling and predictive control approach for nonlinear hybrid systems. System identification of hybrid systems represents a challenging problem because model parameters depend on the mode or operating point of the system. The proposed algorithm applies Model-on-Demand (MoD) estimation to generate a local linear approximation of the nonlinear hybrid system at each time step, using a small subset of data selected by an adaptive bandwidth selector. The appeal of the MoD approach lies in the fact that model parameters are estimated based on a current operating point; hence estimation of locations or modes governed by autonomous discrete events is achieved automatically. The local MoD model is then converted into a mixed logical dynamical (MLD) system representation which can be used directly in a model predictive control (MPC) law for hybrid systems using multiple-degree-of-freedom tuning. The effectiveness of the proposed MoD predictive control algorithm for nonlinear hybrid systems is demonstrated on a hypothetical adaptive behavioral intervention problem inspired by Fast Track, a real-life preventive intervention for improving parental function and reducing conduct disorder in at-risk children. Simulation results demonstrate that the proposed algorithm can be useful for adaptive intervention problems exhibiting both nonlinear and hybrid character.

提出了一种以数据为中心的非线性混合系统建模和预测控制方法。混合动力系统的系统辨识是一个具有挑战性的问题,因为模型参数取决于系统的模式或工作点。该算法利用自适应带宽选择器选择的一小部分数据,应用模型-按需估计(MoD)在每个时间步生成非线性混合系统的局部线性逼近。MoD方法的吸引力在于模型参数是基于当前工作点估计的;因此,由自主离散事件控制的位置或模式的估计是自动实现的。然后将局部MoD模型转换为混合逻辑动态(MLD)系统表示,该表示可直接用于混合系统的多自由度整定模型预测控制(MPC)律。本文提出的MoD预测控制算法对非线性混合系统的有效性在一个假设的自适应行为干预问题上得到了证明,该问题受到Fast Track的启发,Fast Track是一种现实生活中的预防干预,旨在改善父母的功能,减少风险儿童的行为障碍。仿真结果表明,该算法可以有效地解决具有非线性和混合特性的自适应干预问题。
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引用次数: 0
Interactive MRI Segmentation with Controlled Active Vision. 控制主动视觉的交互式MRI分割。
Peter Karasev, Ivan Kolesov, Karol Chudy, Grant Muller, John Xerogeanes, Allen Tannenbaum

Partitioning Magnetic-Resonance-Imaging (MRI) data into salient anatomic structures is a problem in medical imaging that has continued to elude fully automated solutions. Implicit functions are a common way to model the boundaries between structures and are amenable to control-theoretic methods. In this paper, the goal of enabling a human to obtain accurate segmentations in a short amount of time and with little effort is transformed into a control synthesis problem. Perturbing the state and dynamics of an implicit function's driving partial differential equation via the accumulated user inputs and an observer-like system leads to desirable closed-loop behavior. Using a Lyapunov control design, a balance is established between the influence of a data-driven gradient flow and the human's input over time. Automatic segmentation is thus smoothly coupled with interactivity. An application of the mathematical methods to orthopedic segmentation is shown, demonstrating the expected transient and steady state behavior of the implicit segmentation function and auxiliary observer.

将磁共振成像(MRI)数据划分为显著的解剖结构是医学成像中的一个问题,一直无法实现全自动解决方案。隐式函数是一种常用的结构边界建模方法,适用于控制理论方法。在本文中,使人类能够在短时间内以很少的努力获得准确的分割的目标转化为控制综合问题。通过累积的用户输入和类观测器系统对隐函数驱动偏微分方程的状态和动力学进行扰动,可获得理想的闭环行为。使用李亚普诺夫控制设计,在数据驱动的梯度流的影响和人的输入之间建立平衡。因此,自动分割与交互性很好地结合在一起。给出了数学方法在骨科分割中的应用,给出了隐式分割函数和辅助观测器的期望瞬态和稳态行为。
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引用次数: 10
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Proceedings of the ... IEEE Conference on Decision & Control. IEEE Conference on Decision & Control
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