Scientific and statistical database management : International Conference, SSDBM ... : proceedings. International Conference on Scientific and Statistical Database Management最新文献
Randal Burns, William Gray Roncal, Dean Kleissas, Kunal Lillaney, Priya Manavalan, Eric Perlman, Daniel R Berger, Davi D Bock, Kwanghun Chung, Logan Grosenick, Narayanan Kasthuri, Nicholas C Weiler, Karl Deisseroth, Michael Kazhdan, Jeff Lichtman, R Clay Reid, Stephen J Smith, Alexander S Szalay, Joshua T Vogelstein, R Jacob Vogelstein
We describe a scalable database cluster for the spatial analysis and annotation of high-throughput brain imaging data, initially for 3-d electron microscopy image stacks, but for time-series and multi-channel data as well. The system was designed primarily for workloads that build connectomes- neural connectivity maps of the brain-using the parallel execution of computer vision algorithms on high-performance compute clusters. These services and open-science data sets are publicly available at openconnecto.me. The system design inherits much from NoSQL scale-out and data-intensive computing architectures. We distribute data to cluster nodes by partitioning a spatial index. We direct I/O to different systems-reads to parallel disk arrays and writes to solid-state storage-to avoid I/O interference and maximize throughput. All programming interfaces are RESTful Web services, which are simple and stateless, improving scalability and usability. We include a performance evaluation of the production system, highlighting the effec-tiveness of spatial data organization.
{"title":"The Open Connectome Project Data Cluster: Scalable Analysis and Vision for High-Throughput Neuroscience.","authors":"Randal Burns, William Gray Roncal, Dean Kleissas, Kunal Lillaney, Priya Manavalan, Eric Perlman, Daniel R Berger, Davi D Bock, Kwanghun Chung, Logan Grosenick, Narayanan Kasthuri, Nicholas C Weiler, Karl Deisseroth, Michael Kazhdan, Jeff Lichtman, R Clay Reid, Stephen J Smith, Alexander S Szalay, Joshua T Vogelstein, R Jacob Vogelstein","doi":"10.1145/2484838.2484870","DOIUrl":"10.1145/2484838.2484870","url":null,"abstract":"<p><p>We describe a scalable database cluster for the spatial analysis and annotation of high-throughput brain imaging data, initially for 3-d electron microscopy image stacks, but for time-series and multi-channel data as well. The system was designed primarily for workloads that build <i>connectomes</i>- neural connectivity maps of the brain-using the parallel execution of computer vision algorithms on high-performance compute clusters. These services and open-science data sets are publicly available at openconnecto.me. The system design inherits much from NoSQL scale-out and data-intensive computing architectures. We distribute data to cluster nodes by partitioning a spatial index. We direct I/O to different systems-reads to parallel disk arrays and writes to solid-state storage-to avoid I/O interference and maximize throughput. All programming interfaces are RESTful Web services, which are simple and stateless, improving scalability and usability. We include a performance evaluation of the production system, highlighting the effec-tiveness of spatial data organization.</p>","PeriodicalId":74773,"journal":{"name":"Scientific and statistical database management : International Conference, SSDBM ... : proceedings. International Conference on Scientific and Statistical Database Management","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2013-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1145/2484838.2484870","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"32010418","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2012-06-25DOI: 10.1007/978-3-642-31235-9_8
Mian Lu, Y. Tan, Jiuxin Zhao, Ge Bai, Qiong Luo
{"title":"Integrating GPU-Accelerated Sequence Alignment and SNP Detection for Genome Resequencing Analysis","authors":"Mian Lu, Y. Tan, Jiuxin Zhao, Ge Bai, Qiong Luo","doi":"10.1007/978-3-642-31235-9_8","DOIUrl":"https://doi.org/10.1007/978-3-642-31235-9_8","url":null,"abstract":"","PeriodicalId":74773,"journal":{"name":"Scientific and statistical database management : International Conference, SSDBM ... : proceedings. International Conference on Scientific and Statistical Database Management","volume":"3 1","pages":"124-140"},"PeriodicalIF":0.0,"publicationDate":"2012-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"73214814","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2012-06-25DOI: 10.1007/978-3-642-31235-9_33
R. Baeza-Yates, Y. Maarek
{"title":"Usage Data in Web Search: Benefits and Limitations","authors":"R. Baeza-Yates, Y. Maarek","doi":"10.1007/978-3-642-31235-9_33","DOIUrl":"https://doi.org/10.1007/978-3-642-31235-9_33","url":null,"abstract":"","PeriodicalId":74773,"journal":{"name":"Scientific and statistical database management : International Conference, SSDBM ... : proceedings. International Conference on Scientific and Statistical Database Management","volume":"36 7","pages":"16"},"PeriodicalIF":0.0,"publicationDate":"2012-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"72611505","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2012-06-25DOI: 10.1007/978-3-642-31235-9_5
Dongbo Dai, Jiang Xie, Huiran Zhang, Jiaqi Dong
{"title":"Efficient Range Queries over Uncertain Strings","authors":"Dongbo Dai, Jiang Xie, Huiran Zhang, Jiaqi Dong","doi":"10.1007/978-3-642-31235-9_5","DOIUrl":"https://doi.org/10.1007/978-3-642-31235-9_5","url":null,"abstract":"","PeriodicalId":74773,"journal":{"name":"Scientific and statistical database management : International Conference, SSDBM ... : proceedings. International Conference on Scientific and Statistical Database Management","volume":"47 1","pages":"75-95"},"PeriodicalIF":0.0,"publicationDate":"2012-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"88417023","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2012-06-25DOI: 10.1007/978-3-642-31235-9_4
Xike Xie, Reynold Cheng, Man Lung Yiu
{"title":"Evaluating Trajectory Queries over Imprecise Location Data","authors":"Xike Xie, Reynold Cheng, Man Lung Yiu","doi":"10.1007/978-3-642-31235-9_4","DOIUrl":"https://doi.org/10.1007/978-3-642-31235-9_4","url":null,"abstract":"","PeriodicalId":74773,"journal":{"name":"Scientific and statistical database management : International Conference, SSDBM ... : proceedings. International Conference on Scientific and Statistical Database Management","volume":"19 1","pages":"56-74"},"PeriodicalIF":0.0,"publicationDate":"2012-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"84644843","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2012-06-25DOI: 10.1007/978-3-642-31235-9_26
M. R. Huq, P. Apers, A. Wombacher
{"title":"Fine-Grained Provenance Inference for a Large Processing Chain with Non-materialized Intermediate Views","authors":"M. R. Huq, P. Apers, A. Wombacher","doi":"10.1007/978-3-642-31235-9_26","DOIUrl":"https://doi.org/10.1007/978-3-642-31235-9_26","url":null,"abstract":"","PeriodicalId":74773,"journal":{"name":"Scientific and statistical database management : International Conference, SSDBM ... : proceedings. International Conference on Scientific and Statistical Database Management","volume":"2 1","pages":"397-405"},"PeriodicalIF":0.0,"publicationDate":"2012-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"90284161","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2012-06-25DOI: 10.1007/978-3-642-31235-9_31
E. Pourabbas, A. Shoshani, Kesheng Wu
{"title":"Minimizing Index Size by Reordering Rows and Columns","authors":"E. Pourabbas, A. Shoshani, Kesheng Wu","doi":"10.1007/978-3-642-31235-9_31","DOIUrl":"https://doi.org/10.1007/978-3-642-31235-9_31","url":null,"abstract":"","PeriodicalId":74773,"journal":{"name":"Scientific and statistical database management : International Conference, SSDBM ... : proceedings. International Conference on Scientific and Statistical Database Management","volume":"16 1","pages":"467-484"},"PeriodicalIF":0.0,"publicationDate":"2012-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"80621487","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2012-06-25DOI: 10.1007/978-3-642-31235-9_47
Gereon Schüller, R. Saul, Andreas Behrend
{"title":"AIMS: A Tool for the View-Based Analysis of Streams of Flight Data","authors":"Gereon Schüller, R. Saul, Andreas Behrend","doi":"10.1007/978-3-642-31235-9_47","DOIUrl":"https://doi.org/10.1007/978-3-642-31235-9_47","url":null,"abstract":"","PeriodicalId":74773,"journal":{"name":"Scientific and statistical database management : International Conference, SSDBM ... : proceedings. International Conference on Scientific and Statistical Database Management","volume":"26 1","pages":"622-627"},"PeriodicalIF":0.0,"publicationDate":"2012-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"78846485","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2012-06-25DOI: 10.1007/978-3-642-31235-9_12
André Koschmieder, U. Leser
{"title":"Regular Path Queries on Large Graphs","authors":"André Koschmieder, U. Leser","doi":"10.1007/978-3-642-31235-9_12","DOIUrl":"https://doi.org/10.1007/978-3-642-31235-9_12","url":null,"abstract":"","PeriodicalId":74773,"journal":{"name":"Scientific and statistical database management : International Conference, SSDBM ... : proceedings. International Conference on Scientific and Statistical Database Management","volume":"4 1","pages":"177-194"},"PeriodicalIF":0.0,"publicationDate":"2012-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"88704520","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2012-06-25DOI: 10.1007/978-3-642-31235-9_43
Georgia Kougka, A. Gounaris
{"title":"On Optimizing Workflows Using Query Processing Techniques","authors":"Georgia Kougka, A. Gounaris","doi":"10.1007/978-3-642-31235-9_43","DOIUrl":"https://doi.org/10.1007/978-3-642-31235-9_43","url":null,"abstract":"","PeriodicalId":74773,"journal":{"name":"Scientific and statistical database management : International Conference, SSDBM ... : proceedings. International Conference on Scientific and Statistical Database Management","volume":"73 1","pages":"601-606"},"PeriodicalIF":0.0,"publicationDate":"2012-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"82222369","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Scientific and statistical database management : International Conference, SSDBM ... : proceedings. International Conference on Scientific and Statistical Database Management
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