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Application of a MALDI mass spectrometry assay to identify covalent fragments targeting the methyl-lysine reader protein MPP8. 应用MALDI质谱法鉴定针对甲基赖氨酸读取器蛋白MPP8的共价片段。
IF 2.7 Pub Date : 2026-01-30 DOI: 10.1016/j.slasd.2026.100296
Juanita L Sanchez Rubiano, Peter H Buttery, Zachary A Gurard-Levin, Jacqueline L Norris-Drouin, Lilyan M Mather, P Brian Hardy, Stephen V Frye, Lindsey I James

In recent decades, the development of targeted covalent inhibitors (TCIs) has significantly advanced, as evidenced by the increasing number of FDA approved drugs with covalent mechanisms of action. This study focuses on the application of a robust and efficient screening platform to identify covalent fragments that modify the methyl-lysine reader protein M-phase phosphoprotein 8 (MPP8). Using a commercially available covalent fragment library with various electrophile-based warheads, we screened for fragments that covalently label MPP8 using matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) mass spectrometry. Follow-up validation and prioritization studies involving evaluation of the reactivity of hit fragments with glutathione led to the identification of two novel acrylamide-containing fragments that covalently label MPP8 at cysteine 99, which is adjacent to the methyl-lysine binding pocket. These results emphasize the value of efficient screening approaches in discovering novel covalent fragments for challenging targets and demonstrate the potential for developing covalent antagonists targeting MPP8.

近几十年来,靶向共价抑制剂(tci)的发展取得了显著进展,越来越多的FDA批准的具有共价作用机制的药物证明了这一点。本研究的重点是应用一个强大而高效的筛选平台来鉴定修饰甲基赖氨酸读取器蛋白m期磷酸化蛋白8 (MPP8)的共价片段。利用市售的带有各种亲电弹头的共价片段文库,我们使用基质辅助激光解吸电离飞行时间(MALDI-TOF)质谱法筛选共价标记MPP8的片段。后续验证和优先排序研究包括评估撞击片段与谷胱甘肽的反应性,导致鉴定出两个新的含有丙烯酰胺的片段,它们在半胱氨酸99处共价标记MPP8,该位置与甲基赖氨酸结合袋相邻。这些结果强调了高效筛选方法在发现具有挑战性靶点的新型共价片段方面的价值,并展示了开发针对MPP8的共价拮抗剂的潜力。
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引用次数: 0
Temperature-related intensity change (TRIC)-based high-throughput screening enables the discovery of small molecule CD28 binders. 基于温度相关强度变化(TRIC)的高通量筛选使CD28小分子结合物得以发现。
IF 2.7 Pub Date : 2025-09-01 Epub Date: 2025-08-05 DOI: 10.1016/j.slasd.2025.100256
Laura Calvo-Barreiro, Saurabh Upadhyay, Moustafa T Gabr

CD28 is a pivotal costimulatory receptor involved in T cell activation and immune regulation, positioning it as a key therapeutic target for inflammatory diseases, including inflammatory bowel disease (IBD). Despite its potential, small molecules targeting CD28 are still limited. To fill this gap, we developed a high-throughput screening (HTS) platform based on Temperature-Related Intensity Change (TRIC) technology, enabling rapid, immobilization-free screening of chemical libraries of small molecules. Using the Dianthus instrument, we applied our optimized TRIC assay for CD28 (signal-to-noise ratio of 21.99) to screen two MedChemExpress libraries: Small Molecule Immuno-Oncology Compounds (SMIOC) and Protein-Protein Interaction Inhibitors (PPII), identifying 50 initial hits. Following exclusion of compounds with dye interference or aggregation artifacts, 12 candidates were prioritized for further validation. Microscale thermophoresis (MST) confirmed dose-dependent binding of seven compounds to CD28, with affinities in the micromolar range. Surface plasmon resonance (SPR) further validated two compounds, EABP 02,303 and CTEP, as CD28 binders. These results demonstrate that our TRIC-based HTS platform is robust, scalable, and effective for identifying small molecule CD28 binders. The incorporation of orthogonal validation supports the reliability of our findings and highlights the feasibility of small-molecule discovery targeting CD28.

CD28是一种关键的共刺激受体,参与T细胞活化和免疫调节,将其定位为炎症性疾病(包括炎症性肠病(IBD))的关键治疗靶点。尽管有潜力,靶向CD28的小分子仍然有限。为了填补这一空白,我们开发了一种基于温度相关强度变化(TRIC)技术的高通量筛选(HTS)平台,实现了对小分子化学文库的快速、无固定化筛选。使用Dianthus仪器,我们使用优化的TRIC检测CD28(信噪比为21.99)筛选两个MedChemExpress文库:小分子免疫肿瘤化合物(SMIOC)和蛋白质-蛋白质相互作用抑制剂(PPII),确定了50个初始命中点。在排除有染料干扰或聚集伪影的化合物后,12个候选化合物优先进行进一步验证。微尺度热电泳(MST)证实了7种化合物与CD28的剂量依赖性结合,其亲和力在微摩尔范围内。表面等离子体共振(SPR)进一步验证了两个化合物EABP 02303和CTEP作为CD28结合物。这些结果表明,我们基于trics的HTS平台是稳健的,可扩展的,并且有效地识别小分子CD28结合物。正交验证的结合支持了我们研究结果的可靠性,并强调了靶向CD28的小分子发现的可行性。
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引用次数: 0
A high-throughput response to the SARS-CoV-2 pandemic. 高通量应对 SARS-CoV-2 大流行。
Pub Date : 2024-07-01 Epub Date: 2024-05-16 DOI: 10.1016/j.slasd.2024.100160
Lynn Rasmussen, Shalisa Sanders, Melinda Sosa, Sara McKellip, N Miranda Nebane, Yohanka Martinez-Gzegozewska, Andrew Reece, Pedro Ruiz, Anna Manuvakhova, Ling Zhai, Brooke Warren, Aliyah Curry, Qinghua Zeng, J Robert Bostwick, Paige N Vinson

Four years after the beginning of the COVID-19 pandemic, it is important to reflect on the events that have occurred during that time and the knowledge that has been gained. The response to the pandemic was rapid and highly resourced; it was also built upon a foundation of decades of federally funded basic and applied research. Laboratories in government, pharmaceutical, academic, and non-profit institutions all played roles in advancing pre-2020 discoveries to produce clinical treatments. This perspective provides a summary of how the development of high-throughput screening methods in a biosafety level 3 (BSL-3) environment at Southern Research Institute (SR) contributed to pandemic response efforts. The challenges encountered are described, including those of a technical nature as well as those of working under the pressures of an unpredictable virus and pandemic.

在 COVID-19 大流行开始四年之后,我们有必要对在此期间发生的事件和获得的知识进行反思。对这一流行病的反应是迅速和高度资源化的;它也是建立在数十年联邦政府资助的基础研究和应用研究的基础之上的。政府、制药、学术和非营利机构的实验室都在推动 2020 年前的研究成果用于临床治疗方面发挥了作用。本视角概述了南方研究所(SR)在生物安全三级(BSL-3)环境中开发高通量筛选方法如何促进大流行病应对工作。文中描述了所遇到的挑战,包括技术性挑战以及在不可预测的病毒和大流行压力下工作所遇到的挑战。
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引用次数: 0
Optimising cell-based bioassays via integrated design of experiments (ixDoE) - A practical guide. 通过综合实验设计(ixDoE)优化基于细胞的生物测定-实用指南。
Pub Date : 2022-10-01 DOI: 10.2139/ssrn.4107411
J. Solzin, K. Eppler, B. Knapp, H. Buchner, E. Bluhmki
For process optimisation Design of Experiments (DoE) has long been established as a more powerful strategy than a One Factor at a Time approach. Nevertheless, DoE is not widely used especially in the field of cell-based bioassay development although it is known that complex interactions often exist. We believe that biopharmaceutical manufacturers are reluctant to move beyond standard practices due to the perceived costs, efforts, and complexity. We therefore introduce the integrated DoE (ixDoE) approach to target a smarter use of DoEs in the bioassay setting, specifically in optimising resources and time. Where in a standard practice 3 to 4 separate DoEs would be performed, our ixDoE approach includes the necessary statistical inference from only a single experimental set. Hence, we advocate for an innovative, ixDoE approach accompanied by a suitable statistical analysis strategy and present this as a practical guide for a typical bioassay development from basic research to biopharmaceutical industry.
对于过程优化,实验设计(DoE)长期以来一直是一种比一次一个因素方法更强大的策略。然而,DoE并没有被广泛应用,特别是在基于细胞的生物测定开发领域,尽管众所周知,复杂的相互作用经常存在。我们认为,由于成本、努力和复杂性,生物制药制造商不愿超越标准做法。因此,我们引入了集成DoE (ixDoE)方法,目标是在生物测定环境中更智能地使用do,特别是在优化资源和时间方面。在标准实践中,需要执行3到4个独立的do,而我们的ixDoE方法只包含来自单个实验集的必要统计推断。因此,我们提倡一种创新的ixDoE方法,并辅以合适的统计分析策略,并将其作为从基础研究到生物制药行业的典型生物测定发展的实用指南。
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引用次数: 2
Kaposi's sarcoma-associated herpes virus-derived microRNA K12-1 over-activates the PI3K/Akt pathway to facilitate cancer progression in HIV-related gastrointestinal Kaposi's sarcoma. 卡波西氏肉瘤相关疱疹病毒衍生的microRNA K12-1过度激活PI3K/Akt通路,促进hiv相关胃肠道卡波西氏肉瘤的癌症进展。
Pub Date : 2022-04-01 DOI: 10.1016/j.slasd.2022.04.001
X. Huang, W. Rao, Chun Wang, Jiajie Lu, Ziqiong Li, Wenjie Kong, Yan Feng, T. Xu, Rziya Rziya, F. Gao
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引用次数: 2
Development of a High-Throughput Assay to Identify Inhibitors of the Ubiquitin-Conjugating Enzyme UBCH10. 一种高通量测定方法鉴定泛素偶联酶UBCH10抑制剂。
Pub Date : 2022-03-01 DOI: 10.1016/j.slasd.2022.03.007
P. Cléroux, L. Voisin, S. Meloche
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引用次数: 2
Profiling oncogenic KRAS mutant drugs with a cell-based Lumit p-ERK immunoassay. 基于细胞的Lumit p-ERK免疫分析分析致癌KRAS突变药物。
Pub Date : 2022-03-01 DOI: 10.1016/j.slasd.2022.03.001
Matthew R Swiatnicki, Laurie Engel, Riva Shrestha, Juliano Alves, S. Goueli, H. Zegzouti
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引用次数: 1
Three-Dimensional Cell Cultures in Drug Discovery and Development. 药物发现与开发中的三维细胞培养。
Pub Date : 2017-01-01 DOI: 10.1177/2472555217696795
Ye Fang, R. Eglen
The past decades have witnessed significant efforts toward the development of three-dimensional (3D) cell cultures as systems that better mimic in vivo physiology. Today, 3D cell cultures are emerging, not only as a new tool in early drug discovery but also as potential therapeutics to treat disease. In this review, we assess leading 3D cell culture technologies and their impact on drug discovery, including spheroids, organoids, scaffolds, hydrogels, organs-on-chips, and 3D bioprinting. We also discuss the implementation of these technologies in compound identification, screening, and development, ranging from disease modeling to assessment of efficacy and safety profiles.
在过去的几十年里,三维(3D)细胞培养作为更好地模拟体内生理的系统的发展已经见证了重大的努力。今天,3D细胞培养正在兴起,不仅作为早期药物发现的新工具,而且作为治疗疾病的潜在疗法。在这篇综述中,我们评估了领先的3D细胞培养技术及其对药物发现的影响,包括球体、类器官、支架、水凝胶、芯片上的器官和3D生物打印。我们还讨论了这些技术在化合物鉴定、筛选和开发中的应用,从疾病建模到疗效和安全性评估。
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引用次数: 266
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SLAS discovery : advancing life sciences R & D
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