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Insight into genomic organization of pathogenic coronaviruses, SARS-CoV-2: Implication for emergence of new variants, laboratory diagnosis and treatment options. 洞察致病冠状病毒 SARS-CoV-2 的基因组组织:对新变种的出现、实验室诊断和治疗方案的影响。
Pub Date : 2022-10-17 eCollection Date: 2022-01-01 DOI: 10.3389/fmmed.2022.917201
Fikru B Bedada, Gezahegn Gorfu, Shaolei Teng, Marguerite E Neita

SARS-CoV-2 is a novel zoonotic positive-sense RNA virus (ssRNA+) belonging to the genus beta coronaviruses (CoVs) in the Coronaviridae family. It is the causative agent for the outbreak of the disease, COVID-19. It is the third CoV causing pneumonia around the world in the past 2 decades. To date, it has caused significant deaths worldwide. Notably, the emergence of new genetic variants conferring efficient transmission and immune evasion remained a challenge, despite the reduction in the number of death cases, owing to effective vaccination regimen (boosting) and safety protocols. Thus, information harnessed from SARS-CoV-2 genomic organization is indispensable for seeking laboratory diagnosis and treatment options. Here in, we review previously circulating variants of SARS-CoV-2 designated variant of concern (VOC) including the Alpha (United Kingdom), Beta (South Africa), Gamma (Brazil), Delta (India), and recently circulating VOC, Omicron (South Africa) and its divergent subvariants (BA.1, BA.2, BA.3, BA.2.12.1, BA.4 and BA.5) with BA.5 currently becoming dominant and prolonging the COVID pandemic. In addition, we address the role of computational models for mutagenesis analysis which can predict important residues that contribute to transmissibility, virulence, immune evasion, and molecular detections of SARS-CoV-2. Concomitantly, the importance of harnessing the immunobiology of SARS-CoV-2 and host interaction for therapeutic purpose; and use of an in slilico based biocomputational approaches to achieve this purpose via predicting novel therapeutic agents targeting PRR such as toll like receptor, design of universal vaccine and chimeric antibodies tailored to the emergent variant have been highlighted.

SARS-CoV-2 是一种新型人畜共患正感 RNA 病毒(ssRNA+),属于冠状病毒科β冠状病毒属(CoVs)。它是 COVID-19 疫情的病原体。在过去 20 年中,它是全球第三种引起肺炎的 CoV。迄今为止,它已在全球造成大量死亡。值得注意的是,尽管由于采用了有效的疫苗接种方案(强化)和安全规程,死亡病例数量有所减少,但能够有效传播和逃避免疫的新基因变异体的出现仍然是一个挑战。因此,从 SARS-CoV-2 基因组组织中获得的信息对于寻求实验室诊断和治疗方案是不可或缺的。在此,我们回顾了以前流行的 SARS-CoV-2 变异体(VOC),包括 Alpha(英国)、Beta(南非)、Gamma(巴西)、Delta(印度)和最近流行的 VOC Omicron(南非)及其不同的亚变体(BA.1、BA.2、BA.3、BA.2.12.1、BA.4 和 BA.5),其中 BA.5 目前已成为主导变体,并延长了 COVID 的大流行。此外,我们还探讨了诱变分析计算模型的作用,该模型可以预测对 SARS-CoV-2 的传播性、毒性、免疫逃避和分子检测有影响的重要残基。同时,我们还强调了利用 SARS-CoV-2 的免疫生物学和宿主相互作用来达到治疗目的的重要性;以及使用基于 slilico 的生物计算方法,通过预测针对 PRR(如类收费受体)的新型治疗药物、设计通用疫苗和针对新出现变体的嵌合抗体来达到这一目的。
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引用次数: 0
Abortion Training in U.S. Obstetrics and Gynecology Residency Programs 美国妇产科住院医师项目的流产培训
Pub Date : 2017-10-01 DOI: 10.1097/01.AOG.0000525733.25811.07
J. Steinauer, J. Turk, Tali Pomerantz, K. Koenemann, K. Simonson, U. Landy
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引用次数: 0
Both morphological and molecular characters support speciation of South American siskins by sexual selection. 形态特征和分子特征都支持南美黄雀通过性选择进行物种分化。
IF 6.2 Pub Date : 2001-12-01 DOI: 10.1007/PL00000841
R van den Elzen, J Guillén, V Ruiz-del-Valle, L M Allende, E Lowy, J Zamora, A Arnaiz-Villena

South American siskin radiation was studied by both mitochondrial cytochrome b (mt cyt b) DNA sequencing and homologous phenotypic characters; the latter were coded separately according to sex. Mixed phenetic and molecular (total evidence) dendrograms were constructed and the corresponding analyses suggest that speciation started in the South American siskin group with a north to south separation (Carduelis notata/C. barbata) along the Andean spine. A second split may have taken place around the Peruvian Andean mountains, corresponding to the present distribution pattern of C. olivacea. The most recent speciation events seem to have occurred in three sister species pairs: (i) C. xanthogastra/C. atrata, (ii) C. magellanica/C. yarrellii, (iii) C. cucullata/C. crassirostris. Accumulation of consistent characters in both morphological and molecular data at the basal nodes of the dendrograms indicate that speciation events occurred within a short period of time. Our data also suggest that speciation probably occurred by sexual selection through female mating choice in this radiation. Additionally, studies of variable amino acid residues in the mt cyt b molecule show that the three variable amino acids found are placed in the mitochondrial transmembrane region, which is also part of the hypervariable region in mammals. Each of the three amino acid changes occur in each of the three postulated evolutionary groups.

通过线粒体细胞色素b(mt cyt b)DNA测序和同源表型特征研究了南美黄雀的辐射;后者根据性别分别编码。研究人员构建了混合表型和分子(总证据)树枝图,相应的分析表明,南美鶸类的物种分化始于沿安第斯山脊由北向南的分离(Carduelis notata/C. barbata)。第二次分离可能发生在秘鲁安第斯山脉附近,与 C. olivacea 目前的分布模式相对应。最近的物种分化似乎发生在三个姐妹种对:(i) C. xanthogastra/C. atrata,(ii) C. magellanica/C. yarrellii,(iii) C. cucullata/C. crassirostris。在树枝图的基部节点上,形态学和分子数据中一致特征的积累表明,物种分化事件发生在很短的时间内。我们的数据还表明,在这一辐射中,物种的形成可能是通过雌性交配选择进行性选择的结果。此外,对 mt 细胞 b 分子中可变氨基酸残基的研究表明,发现的三个可变氨基酸位于线粒体跨膜区,这也是哺乳动物超变异区的一部分。这三个氨基酸的变化分别出现在三个假定的进化组中。
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引用次数: 0
Factors Influencing Condom Use Depend upon Whether a Woman Has Had a Sexually Transmitted Disease 影响避孕套使用的因素取决于女性是否患有性传播疾病
Pub Date : 2001-11-01 DOI: 10.2307/3030199
A. Hirozawa
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引用次数: 2
Risks and Disadvantages Are Raised for Teenage Mothers with Older Adult Partners 有年长伴侣的未成年母亲面临的风险和劣势
Pub Date : 2001-11-01 DOI: 10.2307/3030200
D. Hollander
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引用次数: 0
Early sexual initiation and subsequent sex-related risks among urban minority youth: the reach for health study. 城市少数民族青年过早开始性行为和随后的性相关风险:健康研究的影响。
Pub Date : 2001-11-01 DOI: 10.2307/3030194
L. O'donnell, C. O'Donnell, A. Stueve
CONTEXTSince the 1980s, the age at which U.S. teenagers, especially minority youth, begin having sex has decreased. There is limited information on the relationship between early sexual initiation and subsequent risky sexual behaviors.METHODSA sample of 1,287 urban minority adolescents completed three surveys in seventh and eighth grade, and 970 completed a follow-up in 10th grade. Logistic regression was used to test the effects of timing of initiation on 10th-grade sexual behaviors and risks, adjusting for gender, ethnicity and age.RESULTSAt baseline, 31% of males and 8% of females reported sexual initiation; by the 10th grade, these figures were 66% and 52%, respectively. Recent intercourse among males increased from 20% at baseline to 39% in eighth grade; 54% reported recent sex and 6% had made a partner pregnant by 10th grade. Among females, recent intercourse tripled from baseline to eighth grade (5% to 15%); 42% reported recent sex and 12% had been pregnant by grade 10. Early initiators had an increased likelihood of having had multiple sex partners, been involved in a pregnancy, forced a partner to have sex, had frequent intercourse and had sex while drunk or high. There were significant gender differences for all outcomes except frequency of intercourse and being drunk or high during sex.CONCLUSIONSMinority adolescents who initiate sexual activity early engage in behaviors that place them at high risk for negative health outcomes. It is important to involve parents and schools in prevention efforts that address sexual initiation in early adolescence and that target youth who continue to place themselves and their partners at risk.
自20世纪80年代以来,美国青少年,尤其是少数族裔青少年开始发生性行为的年龄已经下降。关于过早开始性行为和随后的危险性行为之间关系的信息有限。方法对1287名城市少数民族青少年在七、八年级完成3次问卷调查,970名在十年级完成随访。采用Logistic回归检验开始时间对10年级性行为和风险的影响,并对性别、种族和年龄进行调整。结果基线时,31%的男性和8%的女性报告了性开始;到了10年级,这两个数字分别是66%和52%。男性近期性行为从基线时的20%增加到八年级时的39%;54%的人表示最近发生过性行为,6%的人在10年级之前让伴侣怀孕。在女性中,从基线到八年级,最近的性行为增加了两倍(5%至15%);42%的人最近发生过性行为,12%的人在十年级前怀孕。早期启动者有多个性伴侣、怀孕、强迫伴侣发生性行为、频繁性交以及在醉酒或吸毒时发生性行为的可能性更大。除了性交频率、醉酒或性高潮外,所有结果都有显著的性别差异。结论:过早开始性行为的少数民族青少年,其行为具有较高的负面健康风险。重要的是让家长和学校参与预防工作,解决青春期早期开始性行为的问题,并针对那些继续将自己及其伴侣置于危险之中的青年。
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引用次数: 419
Understanding what works and what doesn't in reducing adolescent sexual risk-taking. 了解在减少青少年性冒险方面哪些有效,哪些无效。
Pub Date : 2001-11-01 DOI: 10.2307/3030195
Kirby Bd
Family Planning Perspectives Family dynamics and attachment also play a role: If parents appropriately supervise and monitor their children, and if the adolescents feel connected to their parents, they are less likely to engage in sexual risk-taking. Family values about sexual behavior and contraceptive use, and family sexual behaviors, also have an impact on the adolescents’ behavior. Moreover, peers’ norms and behavior regarding sex and contraceptive use affect an individual’s sexual and contraceptive behavior, as do adolescents’ partners’ support for contraception. Turning to the teenagers themselves, their age and hormone levels, their attachment to school and religious institutions, their engagement in other problem or risk behaviors, their emotional wellbeing, the characteristics of their relationships with romantic partners, any past history of sexual abuse, and their own sexual beliefs, attitudes, skills and motivations all affect their sexual or contraceptive behavior. In addition, Emerging Answers reviewed 73 studies measuring the impact of diverse types of programs. There was particularly strong evidence that four groups of programs are effective at reducing sexual risktaking or pregnancy: •sex and HIV education programs with certain qualities; •some clinic-patient protocols that focus on sexual behavior; •service learning programs that include both intensive voluntary service and ongoing small-group discussions about the service; and •the Children’s Aid Society–Carrera programs (CAS-Carrera programs), which include multiple youth development components, health services and close relationships with the staff. In addition, Emerging Answers found weaker evidence that a few other programs were effective. Douglas Kirby is senior research scientist at ETR Associates, Santa Cruz, CA. The author thanks Karin Coyle, Jill Denner and Sarah Brown for their comments on an early version of this viewpoint. Understanding What Works and What Doesn’t In Reducing Adolescent Sexual Risk-Taking
家庭动态和依恋也起作用:如果父母适当地监督和监督他们的孩子,如果青少年感到与父母有联系,他们就不太可能从事冒险的性行为。家庭对性行为和避孕药具使用的价值观以及家庭性行为对青少年的行为也有影响。此外,同龄人在性行为和避孕方面的规范和行为会影响个体的性行为和避孕行为,青少年伴侣对避孕的支持也会影响个体的性行为和避孕行为。至于青少年本身,他们的年龄和激素水平,他们对学校和宗教机构的依恋,他们参与其他问题或风险行为,他们的情感健康,他们与浪漫伴侣的关系特征,任何过去的性虐待历史,以及他们自己的性信仰,态度,技能和动机都会影响他们的性行为或避孕行为。此外,新兴答案回顾了73项研究,衡量了不同类型项目的影响。有特别有力的证据表明,四组方案在减少性冒险或怀孕方面是有效的:•具有一定质量的性和艾滋病毒教育方案;•一些关注性行为的临床-患者协议;•服务学习计划,包括密集的志愿服务和关于服务的小组讨论;•儿童援助协会-卡雷拉方案(cas -卡雷拉方案),其中包括多个青年发展组成部分、保健服务和与工作人员的密切关系。此外,新兴答案发现了一些其他项目有效的较弱证据。道格拉斯·柯比(Douglas Kirby)是加州圣克鲁斯市ETR Associates的高级研究科学家。作者感谢卡琳·科伊尔(Karin Coyle)、吉尔·丹纳(Jill Denner)和莎拉·布朗(Sarah Brown)对这一观点早期版本的评论。了解在减少青少年性冒险方面什么有效,什么无效
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引用次数: 161
The effects of early childbearing on schooling over time. 晚育对学校教育的影响。
Pub Date : 2001-11-01 DOI: 10.2307/3030193
S. Hofferth, Lori L. Reid, F. Mott
CONTEXTIn recent studies, the effects of teenage childbearing on the schooling of young women have been smaller than those in earlier research. The discrepancy has been attributed to the use in the later studies of controls for unmeasured differences between young women who start childbearing early and those who do not, but could instead reflect changes in the effect of early childbearing over time.METHODSData from the National Longitudinal Survey of the Labor Market Experience of Youth and the Panel Study of Income Dynamics are used to identify the reasons for this difference. Logistic regression, ordinary least-squares regression and fixed-effects models examine the impact of early childbearing on rates of high school graduation and college attendance, and number of years of schooling completed through age 29.RESULTSThe two data sets show a significant negative impact of a teenage birth on rates and years of completed schooling. For example, teenage mothers complete 1.9-2.2 fewer years of education than do women who delay their first birth until age 30 or older. Moreover, compared with women who give birth at age 30 or older, teenage mothers have odds of high school completion 10-12% as high and odds of postsecondary schooling 14-29% as high. Unobserved differences between young mothers and their childless peers reduce, but do not eliminate, the effects of early births. Effects on high school completion declined in recent periods because more young women completed high school, regardless of the timing of their first birth. However, the gap between early and later childbearers in postsecondary school attendance widened from 27 to 44 percentage points between the early 1960s and the early 1990s.CONCLUSIONSGiven the current importance of a college education, teenage childbearers today are at least as disadvantaged as those of past generations.
在最近的研究中,青少年生育对年轻女性上学的影响比之前的研究要小。这一差异被归因于后来的对照研究中使用了早育和不早育的年轻女性之间未测量的差异,但这可能反映了早育的影响随着时间的推移而变化。方法采用全国青年劳动力市场经验纵向调查和收入动态面板研究的数据来确定这种差异的原因。逻辑回归、普通最小二乘回归和固定效应模型检验了早育对高中毕业率和大学出勤率的影响,以及到29岁为止完成教育的年数。结果两组数据显示,青少年出生对入学率和完成学业的年数有显著的负面影响。例如,青少年母亲比那些推迟到30岁或更晚才生第一胎的妇女少接受1.9-2.2年的教育。此外,与30岁或30岁以上生育的女性相比,少女母亲完成高中学业的几率为10-12%,接受高等教育的几率为14-29%。年轻母亲和没有孩子的同龄人之间未被观察到的差异会减少,但不会消除早产的影响。对高中毕业率的影响在最近一段时间有所下降,因为越来越多的年轻女性完成了高中学业,无论她们第一次生育的时间是什么。然而,在20世纪60年代初至90年代初,晚育者和早育者在高等教育入学率上的差距从27个百分点扩大到44个百分点。鉴于目前大学教育的重要性,今天的青少年子女至少和过去几代人一样处于不利地位。
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引用次数: 297
Differences in teenage pregnancy rates among five developed countries: the roles of sexual activity and contraceptive use. 五个发达国家少女怀孕率的差异:性活动和避孕措施使用的作用。
Pub Date : 2001-11-01 DOI: 10.2307/3030191
J. Darroch, Susheela Singh, J. Frost
CONTEXTAdolescent pregnancy, birth, abortion and sexually transmitted disease (STD) rates are much higher in the United States than in most other developed countries.METHODSGovernment statistics or nationally representative survey data were supplemented with data collected by private organizations or for regional or local populations to conduct studies of adolescent births, abortions, sexual activity and contraceptive use in Canada, the United States, Sweden, France and Great Britain.RESULTSAdolescent childbearing is more common in the United States (22% of women reported having had a child before age 20) than in Great Britain (15%), Canada (11%), France (6%) and Sweden (4%); differences are even greater for births to younger teenagers. A lower proportion of teenage pregnancies are resolved through abortion in the United States than in the other countries; however, because of their high pregnancy rate, U.S. teenagers have the highest abortion rate. The age of sexual debut varies little across countries, yet American teenagers are the most likely to have multiple partners. A greater proportion of U.S. women reported no contraceptive use at either first or recent intercourse (25% and 20%, respectively) than reported nonuse in France (11% and 12%, respectively), Great Britain (21% and 4%, respectively) and Sweden (22% and 7%, respectively).CONCLUSIONSData on contraceptive use are more important than data on sexual activity in explaining variation in levels of adolescent pregnancy and childbearing among the five developed countries; however, the higher level of multiple sexual partnership among American teenagers may help explain their higher STD rates.
在美国,青少年怀孕、生育、堕胎和性传播疾病(STD)的比率远远高于其他大多数发达国家。方法:在加拿大、美国、瑞典、法国和英国,政府统计数据或具有全国代表性的调查数据辅以私人组织或地区或当地人口收集的数据,对青少年生育、堕胎、性活动和避孕药具使用情况进行研究。结果:青少年生育在美国更为普遍(22%的女性报告在20岁之前有过孩子),而在英国(15%)、加拿大(11%)、法国(6%)和瑞典(4%);对于年龄更小的青少年来说,差异甚至更大。在美国,通过堕胎解决少女怀孕问题的比例低于其他国家;然而,由于怀孕率高,美国青少年的堕胎率最高。初次性行为的年龄在不同国家差别不大,但美国青少年最有可能有多个性伴侣。美国女性在第一次或最近的性交中没有使用避孕措施的比例(分别为25%和20%)高于法国(分别为11%和12%)、英国(分别为21%和4%)和瑞典(分别为22%和7%)。结论在解释5个发达国家青少年怀孕和生育水平差异时,避孕药具使用数据比性活动数据更为重要;然而,美国青少年中较高水平的多重性伙伴关系可能有助于解释他们较高的性病发病率。
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引用次数: 391
Socioeconomic disadvantage and adolescent women's sexual and reproductive behavior: the case of five developed countries. 社会经济劣势与青春期妇女的性和生殖行为:以五个发达国家为例。
Pub Date : 2001-11-01 DOI: 10.2307/3030192
Susheela Singh, J. Darroch, J. Frost
CONTEXTDifferences among developed countries in teenagers' patterns of sexual and reproductive behavior may partly reflect differences in the extent of disadvantage. However, to date, this potential contribution has received little attention.METHODSResearchers in Canada, France, Great Britain, Sweden and the United States used the most current survey and other data to study adolescent sexual and reproductive behavior. Comparisons were made within and across countries to assess the relationships between these behaviors and factors that may indicate disadvantage.RESULTSAdolescent childbearing is more likely among women with low levels of income and education than among their better-off peers. Levels of childbearing are also strongly related to race, ethnicity and immigrant status, but these differences vary across countries. Early sexual activity has little association with income, but young women who have little education are more likely to initiate intercourse during adolescence than those who are better educated. Contraceptive use at first intercourse differs substantially according to socioeconomic status in some countries but not in others. Within countries, current contraceptive use does not differ greatly according to economic status, but at each economic level, use is higher in Great Britain than in the United States. Regardless of their socioeconomic status, U.S. women are the most likely to give birth as adolescents. In addition, larger proportions of adolescents are disadvantaged in the United States than in other developed countries.CONCLUSIONSComparatively widespread disadvantage in the United States helps explain why U.S. teenagers have higher birthrates andpregnancy rates than those in other developed countries. Improving U.S. teenagers' sexual and reproductive behavior requires strategies to reduce the numbers of young people growing up in disadvantaged conditions and to help those who are disadvantaged overcome the obstacles they face.
发达国家之间青少年性行为和生殖行为模式的差异可能部分反映了劣势程度的差异。然而,到目前为止,这种潜在的贡献几乎没有受到重视。方法加拿大、法国、英国、瑞典和美国的研究人员利用最新的调查和其他数据来研究青少年的性和生殖行为。在国家内部和国家之间进行比较,以评估这些行为与可能表明不利因素之间的关系。结果收入和教育水平较低的女性比生活条件较好的女性更容易在青春期生育。生育水平也与种族、民族和移民身份密切相关,但这些差异因国家而异。过早的性行为与收入关系不大,但受教育程度较低的年轻女性比受教育程度较高的女性更有可能在青春期开始性行为。在一些国家,初次性交时避孕措施的使用根据社会经济地位有很大差异,但在其他国家则没有。在各国内部,目前避孕药具的使用并没有因经济地位的不同而有很大差别,但在每个经济水平上,英国的使用都比美国高。不管她们的社会经济地位如何,美国女性最有可能在青少年时期生育。此外,与其他发达国家相比,美国青少年处于不利地位的比例更大。结论美国相对普遍的劣势有助于解释为什么美国青少年的出生率和怀孕率高于其他发达国家。改善美国青少年的性行为和生殖行为需要采取策略,减少在不利条件下成长的年轻人的数量,并帮助那些处于不利地位的人克服他们面临的障碍。
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引用次数: 270
期刊
Family planning perspectives
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