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Mixed quantum/classical theory (MQCT) approach to the dynamics of molecule-molecule collisions in complex systems. 复杂系统中分子-分子碰撞动力学的量子/经典混合理论(MQCT)方法。
IF 3.4 3区 化学 Pub Date : 2024-05-21 DOI: 10.1039/d3fd00166k
Carolin Joy, Bikramaditya Mandal, Dulat Bostan, Marie-Lise Dubernet, Dmitri Babikov

We developed a general theoretical approach and a user-ready computer code that permit study of the dynamics of collisional energy transfer and ro-vibrational energy exchange in complex molecule-molecule collisions. The method is a mixture of classical and quantum mechanics. The internal ro-vibrational motion of collision partners is treated quantum mechanically using a time-dependent Schrödinger equation that captures many quantum phenomena including state quantization and zero-point energy, propensity and selection rules for state-to-state transitions, quantum symmetry and interference phenomena. A significant numerical speed up is obtained by describing the translational motion of collision partners classically, using the Ehrenfest mean-field trajectory approach. Within this framework a family of approximate methods for collision dynamics is developed. Several benchmark studies for diatomic and triatomic molecules, such as H2O and ND3 collided with He, H2 and D2, show that the results of MQCT are in good agreement with full-quantum calculations in a broad range of energies, especially at high collision energies where they become nearly identical to the full quantum results. Numerical efficiency of the method and massive parallelism of the MQCT code permit us to embrace some of the most complicated collisional systems ever studied, such as C6H6 + He, CH3COOH + He and H2O + H2O. Application of MQCT to the collisions of chiral molecules such as CH3CHCH2O + He, and to molecule-surface collisions is also possible and will be pursued in the future.

我们开发了一种通用理论方法和用户可使用的计算机代码,可用于研究复杂分子-分子碰撞中碰撞能量转移和振动能量交换的动力学。该方法是经典力学和量子力学的混合体。碰撞伙伴的内部鹏振运动是利用依赖时间的薛定谔方程进行量子力学处理的,该方程捕捉了许多量子现象,包括状态量子化和零点能、状态到状态转换的倾向和选择规则、量子对称性和干涉现象。通过使用艾伦费斯特平均场轨迹方法对碰撞伙伴的平移运动进行经典描述,可以大大提高数值计算速度。在此框架内,开发了一系列碰撞动力学近似方法。针对二原子和三原子分子(如 H2O 和 ND3 与 He、H2 和 D2 碰撞)的几项基准研究表明,MQCT 的结果在很大能量范围内与全量子计算结果非常一致,特别是在高碰撞能量下,与全量子计算结果几乎相同。该方法的数值效率和 MQCT 代码的大规模并行性使我们能够处理一些有史以来最复杂的碰撞系统,如 C6H6 + He、CH3COOH + He 和 H2O + H2O。将 MQCT 应用于 CH3CHCH2O + He 等手性分子的碰撞以及分子与表面的碰撞也是可能的,我们将在未来继续研究。
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引用次数: 0
Exploring the chemical dynamics of phenanthrene (C14H10) formation via the bimolecular gas-phase reaction of the phenylethynyl radical (C6H5CC) with benzene (C6H6). 通过苯乙炔基(C6H5CC)与苯(C6H6)的双分子气相反应,探索菲(C14H10)形成的化学动力学。
IF 3.4 3区 化学 Pub Date : 2024-05-20 DOI: 10.1039/d3fd00159h
Shane J Goettl, Zhenghai Yang, Chao He, Ankit Somani, Adrian Portela-Gonzalez, Wolfram Sander, Alexander M Mebel, Ralf I Kaiser

The exploration of the fundamental formation mechanisms of polycyclic aromatic hydrocarbons (PAHs) is crucial for the understanding of molecular mass growth processes leading to two- and three-dimensional carbonaceous nanostructures (nanosheets, graphenes, nanotubes, buckyballs) in extraterrestrial environments (circumstellar envelopes, planetary nebulae, molecular clouds) and combustion systems. While key studies have been conducted exploiting traditional, high-temperature mechanisms such as the hydrogen abstraction-acetylene addition (HACA) and phenyl addition-dehydrocyclization (PAC) pathways, the complexity of extreme environments highlights the necessity of investigating chemically diverse mass growth reaction mechanisms leading to PAHs. Employing the crossed molecular beams technique coupled with electronic structure calculations, we report on the gas-phase synthesis of phenanthrene (C14H10)-a three-ring, 14π benzenoid PAH-via a phenylethynyl addition-cyclization-aromatization mechanism, featuring bimolecular reactions of the phenylethynyl radical (C6H5CC, X2A1) with benzene (C6H6) under single collision conditions. The dynamics involve a phenylethynyl radical addition to benzene without entrance barrier leading eventually to phenanthrene via indirect scattering dynamics through C14H11 intermediates. The barrierless nature of reaction allows rapid access to phenanthrene in low-temperature environments such as cold molecular clouds which can reach temperatures as low as 10 K. This mechanism constitutes a unique, low-temperature framework for the formation of PAHs as building blocks in molecular mass growth processes to carbonaceous nanostructures in extraterrestrial environments thus affording critical insight into the low-temperature hydrocarbon chemistry in our universe.

探索多环芳烃(PAHs)的基本形成机理对于了解地外环境(环星包层、行星星云、分子云)和燃烧系统中导致二维和三维碳质纳米结构(纳米片、石墨烯、纳米管、降压球)的分子质量增长过程至关重要。虽然主要的研究都是利用传统的高温机制进行的,如氢抽提-乙炔加成(HACA)和苯基加成-脱氢环化(PAC)途径,但极端环境的复杂性凸显了研究导致多环芳烃的化学多样性质量增长反应机制的必要性。利用交叉分子束技术和电子结构计算,我们报告了在单次碰撞条件下,通过苯乙炔基(C6H5CC,X2A1)与苯(C6H6)的双分子反应,通过苯乙炔基加成-环化-芳香化机理气相合成菲(C14H10)--一种三环 14π 苯类多环芳烃。该动力学涉及苯乙炔基与苯的无入口障碍加成反应,最终通过 C14H11 中间体的间接散射动力学生成菲。反应的无障碍性质允许在低温环境(如温度可低至 10 K 的冷分子云)中快速获得菲。这一机制构成了一个独特的低温框架,用于在地外环境中形成多环芳烃,作为分子质量增长过程中的构件,形成碳质纳米结构,从而为我们深入了解宇宙中的低温碳氢化合物化学提供了重要依据。
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引用次数: 0
Organic NMR Crystallography: Enabling Progress for Applications to Pharmaceuticals and Plant Cell Walls 有机核磁共振晶体学:推动药物和植物细胞壁应用的进步
IF 3.4 3区 化学 Pub Date : 2024-05-20 DOI: 10.1039/d4fd00088a
Zainab Rehman, Jairah Lubay, W. Trent Trent Franks, Emily Corlett, Bao Nguyen, Garry Scrivens, Brian Samas, Heather Frericks-Schmidt, Steven P. Brown
The application of NMR crystallography to organic molecules is exemplified by two case studies. For the tosylate salt of the active pharmaceutical ingredient, Ritlectinib, solid-state NMR spectra are presented at a 1H Larmor frequency of 1 GHz and a magic-angle spinning (MAS) frequency of 60 kHz. Specifically, 14N-1H heteronuclear multiple-quantum coherence (HMQC) and 1H-1H double-quantum (DQ) single-quantum (SQ) correlation experiments are powerful probes of hydrogen bonding interactions. A full assignment of the 1H, 13C and 14N/ 15N chemical shifts is achieved using also 1H-13C cross polarization (CP) HETCOR spectra together with gauge-including projector augmented wave (GIPAW) DFT calculation for the geometry-optimised X-ray diffraction crystal structure that is reported here (CCDC 2352028). In addition, GIPAW calculations are presented for the 13C chemical shifts in the two polymorphs of cellulose for which diffraction structures are available. For both case studies, a focus is on the discrepancy between experiment and GIPAW calculation.
核磁共振晶体学在有机分子中的应用以两个案例研究为例。对于活性药物成分 Ritlectinib 的对甲苯磺酸盐,以 1 GHz 的 1H Larmor 频率和 60 kHz 的魔角旋转 (MAS) 频率展示了固态 NMR 光谱。具体来说,14N-1H 异核多量子相干 (HMQC) 和 1H-1H 双量子 (DQ) 单量子 (SQ) 关联实验是氢键相互作用的有力探针。此外,还利用 1H-13C 交叉极化 (CP) HETCOR 光谱以及对本文所报告的几何优化 X 射线衍射晶体结构(CCDC 2352028)进行的 gauge-including projector augmented wave (GIPAW) DFT 计算,实现了对 1H、13C 和 14N/ 15N 化学位移的全面分配。此外,GIPAW 还计算了有衍射结构的两种纤维素多晶体的 13C 化学位移。这两个案例研究的重点是实验与 GIPAW 计算之间的差异。
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引用次数: 0
Dynamics of carbene formation in the reaction of methane with the tantalum cation in the gas phase. 甲烷与钽阳离子在气相中反应形成碳烯的动力学。
IF 3.4 3区 化学 Pub Date : 2024-05-20 DOI: 10.1039/d3fd00171g
Marcel Meta, Maximilian E Huber, Maurice Birk, Martin Wedele, Milan Ončák, Jennifer Meyer

The controlled activation of methane has drawn significant attention throughout various disciplines over the last few decades. In gas-phase experiments, the use of model systems with reduced complexity compared to condensed-phase catalytic systems allows us to investigate the intrinsic reactivity of elementary reactions down to the atomic level. Methane is rather inert in chemical reactions, as the weakening or cleavage of a C-H bond is required to make use of methane as C1-building block. The simplest model system for transition-metal-based catalysts is a mono-atomic metal ion. Only a few atomic transition-metal cations activate methane at room temperature. One of the most efficient elements is tantalum, which forms a carbene and releases molecular hydrogen in the reaction with methane: Ta+ + CH4 → TaCH2+ + H2. The reaction takes place at room temperature due to efficient intersystem crossing from the quintet to the triplet surface, i.e., from the electronic ground state of the tantalum cation to the triplet ground state of the tantalum carbene. This multi-state reactivity is often seen for reactions involving transition-metal centres, but leads to their theoretical treatment being a challenge even today. Chemical reactions, or to be precise reactive collisions, are dynamic processes making their description even more of a challenge to experiment and theory alike. Experimental energy- and angle-differential cross sections allow us to probe the rearrangement of atoms during a reactive collision. By interpreting the scattering signatures, we gain insight into the atomistic mechanisms and can move beyond stationary descriptions. Here, we present a study combining collision energy dependent experimentally measured differential cross sections with ab initio calculations of the minimum energy pathway. Product ion velocity distributions were recorded using our crossed-beam velocity map imaging experiment dedicated to studying transition-metal ion molecule reactions. TaCH2+ velocity distributions reveal a significant degree of indirect dynamics. However, the scattering distributions also show signatures of rebound dynamics. We compare the present results to the oxygen transfer reaction between Ta+ and carbon dioxide, which we recently studied.

过去几十年来,甲烷的受控活化引起了各学科的极大关注。在气相实验中,与凝聚相催化系统相比,模型系统的复杂性有所降低,这使得我们能够研究低至原子水平的基本反应的内在反应性。甲烷在化学反应中是相当惰性的,因为要利用甲烷作为 C1 构件,必须削弱或裂解一个 C-H 键。基于过渡金属的催化剂最简单的模型系统是单原子金属离子。在室温下,只有少数过渡金属阳离子原子能激活甲烷。最有效的元素之一是钽,它在与甲烷的反应中形成碳烯并释放出分子氢:Ta+ + CH4 → TaCH2+ + H2。该反应在室温下进行,这是因为系统间从五重面到三重面的高效交叉,即从钽阳离子的电子基态到钽碳烯的三重基态。在涉及过渡金属中心的反应中,这种多态反应性经常出现,但其理论处理至今仍是一项挑战。化学反应,确切地说是反应碰撞,是一个动态过程,因此对它们的描述对实验和理论都是一个挑战。实验性能差和角差截面使我们能够探究反应碰撞过程中原子的重新排列。通过解释散射特征,我们可以深入了解原子机制,从而超越静态描述。在此,我们介绍了一项研究,该研究结合了碰撞能量相关实验测量的微分截面和最小能量路径的 ab initio 计算。我们利用专门研究过渡金属离子分子反应的交叉光束速度图成像实验记录了生成离子的速度分布。TaCH2+ 的速度分布显示了很大程度的间接动力学。不过,散射分布也显示出反弹动力学的特征。我们将本结果与我们最近研究的 Ta+ 与二氧化碳之间的氧转移反应进行了比较。
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引用次数: 0
Bimolecular collision outcomes on multidimensional potential energy surfaces: infrared spectroscopy and activation of NO-alkane collision complexes. 多维势能面上的双分子碰撞结果:NO-烷烃碰撞复合物的红外光谱和活化。
IF 3.4 3区 化学 Pub Date : 2024-05-20 DOI: 10.1039/d3fd00176h
John P Davis, P Garrett Burroughs, W Churchill Wilkinson, Ellora Majumdar, Nathanael M Kidwell

In bimolecular collisions between open-shell radicals and increasingly-larger alkanes, the relative impact configurations open the possibility of reactive and nonreactive outcomes that are isomer specific. To model the interaction potential between molecular scattering partners, observables are needed from experiments that can quantify both the initial molecular orientations and internal energies on multidimensional potential energy surfaces. Recent work by our group demonstrated that upon infrared (IR) excitation, the dynamics of the nitric oxide-methane collision complex (NO-CH4) are dependent on the initial monomer geometries, as small changes in configuration substantially affect the energies, electronic couplings, and predissociation pathways due to the Jahn-Teller effect. This study focuses on the isomer-specific scattering mechanisms between NO and ethane (C2H6), encoded in the spectroscopic and dynamical signatures of the NO-C2H6 collision complex. IR action spectroscopy with 1 + 1 resonance-enhanced multiphoton ionization of NO products was employed to characterize the fundamental CH stretch transitions of NO-C2H6, as well as to initiate the nonreactive decay mechanisms of the complex. Furthermore, velocity map imaging (VMI) was utilized to explore the dynamics prior to and following IR excitation of NO-C2H6, imprinted on the NO photoproducts. This work compares the dynamics from NO-C2H6 and NO-CH4 vibrational predissociation, in which substantial differences are observed in the energy exchange mechanisms during the evolution of the collision complexes to products.

在开壳自由基和越来越大的烷烃之间的双分子碰撞中,相对的撞击构型可能会产生反应性和非反应性的结果,而这些结果是同分异构体特有的。为了模拟分子散射伙伴之间的相互作用势,需要从实验中获得能量化多维势能面上初始分子方向和内部能量的观测数据。我们小组最近的研究表明,在红外(IR)激发下,一氧化氮-甲烷碰撞复合物(NO-CH4)的动力学依赖于初始单体的几何形状,因为构型的微小变化会在贾恩-泰勒效应的作用下极大地影响能量、电子耦合和预解离路径。本研究的重点是 NO 和乙烷(C2H6)之间的异构体特异性散射机制,这些机制体现在 NO-C2H6 碰撞复合物的光谱和动力学特征中。利用 1 + 1 共振增强多光子电离 NO 产物的红外行动光谱分析了 NO-C2H6 的基本 CH 伸展跃迁,并启动了复合物的非反应衰变机制。此外,还利用速度图成像(VMI)技术探索了 NO-C2H6 被红外激发之前和之后的动态,并在 NO 的光电产物上留下了印记。这项研究比较了 NO-C2H6 和 NO-CH4 振动预解离的动力学,其中观察到碰撞复合物向产物演化过程中能量交换机制的巨大差异。
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引用次数: 0
An engineered T7 RNA Polymerase for efficient co-transcriptional capping with reduced dsRNA byproducts in mRNA synthesis 一种经过改造的 T7 RNA 聚合酶,可在 mRNA 合成过程中减少 dsRNA 副产物,实现高效的共转录封顶
IF 3.4 3区 化学 Pub Date : 2024-05-17 DOI: 10.1039/d4fd00023d
Matt Miller, Oscar Alvizo, Scott Baskerville, Avinash Chinthala, Chinping Chng, Justin Dassie, Jonathan Dorigatti, Gjalt W Huisman, Stephan Jenne, Supriya Kadam, Neil Leatherbury, Stefan Lutz, Melissa Mayo, Arpan Mukherjee, Antoinette Sero, Stuart Sundseth, Jonathan Penfield, James Riggins, Xiyun Zhang
Messenger RNA (mRNA) therapies have recently gained tremendous traction with the approval of mRNA vaccines for the prevention of SARS-CoV-2 infection. However, manufacturing challenges have complicated large scale mRNA production, which is necessary for the clinical viability of these therapies. Not only can the incorporation of the required 5’ 7-methylguanosine cap analog be inefficient and costly, in vitro transcription (IVT) using wild-type T7 RNA polymerase generates undesirable double-stranded RNA (dsRNA) byproducts that elicit adverse host immune responses and are difficult to remove at large scale. To overcome these challenges, we have engineered a novel RNA polymerase, T7-68, that co-transcriptionally incorporates both di- and tri-nucleotide cap analogs with high efficiency, even at reduced cap analog concentrations. We also demonstrate that IVT products generated with T7-68 have reduced dsRNA content.
随着用于预防 SARS-CoV-2 感染的 mRNA 疫苗获得批准,信使 RNA(mRNA)疗法最近获得了巨大的发展。然而,制造方面的挑战使大规模 mRNA 生产变得复杂,而大规模生产是这些疗法在临床上行之有效的必要条件。使用野生型 T7 RNA 聚合酶进行体外转录 (IVT) 会产生不良的双链 RNA(dsRNA)副产物,这些副产物会引起宿主的不良免疫反应,而且很难大规模去除。为了克服这些挑战,我们设计了一种新型 RNA 聚合酶 T7-68,它能高效地共转录结合二核苷酸和三核苷酸帽子类似物,即使在帽子类似物浓度降低的情况下也是如此。我们还证明,用 T7-68 生成的 IVT 产物中 dsRNA 含量较低。
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引用次数: 0
Six-dimensional quantum dynamics of an Eley-Rideal reaction between gaseous and adsorbed hydrogen atoms on Cu(111). Cu(111)上气态氢原子与吸附氢原子之间埃利-里德尔反应的六维量子动力学。
IF 3.4 3区 化学 Pub Date : 2024-05-17 DOI: 10.1039/d3fd00163f
Longlong Xiong, Liang Zhang, Bin Zhao, Bin Jiang

In the form of direct abstraction of a surface adsorbate by a gaseous projectile, the Eley-Rideal (ER) reaction at the gas-surface interface manifests interesting dynamics. Unfortunately, high-dimensional quantum dynamical (QD) studies for ER reactions remain very challenging, which demands a large configuration space and the coordinate transformation of wavefunctions. Here, we report the first six-dimensional (6D) fully coupled quantum scattering method for studying the ER reaction between gas phase H(D) atoms and adsorbed D(H) atoms on a rigid Cu(111) surface. Reaction probabilities and product rovibrational state distributions obtained by this 6D model are found to be quite different from those obtained by reduced-dimensional QD models, demonstrating the high-dimensional nature of the ER reaction. Using two distinct potential energy surfaces (PESs), we further discuss the influence of the PES on the calculated product vibrational and rotational state distributions, in comparison with experimental results. The lateral corrugation and the exothermicity of the PES are found to play a critical role in controlling the energy disposal in the ER reaction.

在气体射弹直接吸附表面吸附物的形式下,气体-表面界面上的埃利-里德尔(ER)反应表现出有趣的动力学。遗憾的是,ER 反应的高维量子动力学(QD)研究仍然非常具有挑战性,这需要一个巨大的构型空间和波函数的坐标变换。在此,我们报告了第一种六维(6D)全耦合量子散射方法,用于研究气相 H(D)原子与刚性 Cu(111)表面上吸附的 D(H)原子之间的 ER 反应。研究发现,该 6D 模型得到的反应概率和产物振荡态分布与还原维 QD 模型得到的概率和产物振荡态分布大相径庭,这证明了 ER 反应的高维性质。利用两个不同的势能面(PES),我们进一步讨论了 PES 对计算产物振动和旋转状态分布的影响,并与实验结果进行了比较。研究发现,势能面的横向波纹和放热性在控制 ER 反应的能量处置方面起着至关重要的作用。
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引用次数: 0
Molecular beam scattering of ammonia from a dodecane flat liquid jet. 十二烷平面液体射流对氨的分子束散射。
IF 3.4 3区 化学 Pub Date : 2024-05-17 DOI: 10.1039/d3fd00169e
Steven Saric, Walt Yang, Daniel M Neumark

The evaporation and scattering of ND3 from a dodecane flat liquid jet are investigated and the results are compared with previous studies on molecular beam scattering from liquid surfaces. Evaporation is well-described by a Maxwell-Boltzmann flux distribution with a cos θ angular distribution at the liquid temperature. Scattering experiments at Ei = 28.8 kJ mol-1 over a range of deflection angles show evidence for impulsive scattering and thermal desorption. At a deflection angle of 90°, the thermal desorption fraction is 0.49, which is higher than that of other molecules previously scattered from dodecane and consistent with work performed on NH3 scattering from a squalane-wetted wheel. ND3 scattering from dodecane results in super-specular scattering, as seen in previous experiments on dodecane. The impulsive scattering channel is fitted to a "soft-sphere" model, yielding an effective surface mass of 55 amu and an internal excitation of 5.08 kJ mol-1. Overall, impulsively scattered ND3 behaves similarly to other small molecules scattered from dodecane.

研究了十二烷平面液体射流中 ND3 的蒸发和散射,并将结果与之前关于液体表面分子束散射的研究进行了比较。在液体温度下,具有 cos θ 角分布的麦克斯韦-玻尔兹曼通量分布很好地描述了蒸发。在 Ei = 28.8 kJ mol-1 的偏转角范围内进行的散射实验显示了脉冲散射和热解吸的证据。在偏转角为 90° 时,热解吸分数为 0.49,高于之前从十二烷中散射出的其他分子,并且与从角鲨烷润湿轮中散射出 NH3 的研究结果一致。ND3 从十二烷中散射会产生超斑点散射,这与之前对十二烷的实验结果一致。脉冲散射通道与 "软球 "模型相匹配,得出有效表面质量为 55 amu,内部激发为 5.08 kJ mol-1。总体而言,脉冲散射 ND3 的表现与十二烷散射的其他小分子类似。
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引用次数: 0
Investigating the effect of fusion partners on the enzymatic activity and thermodynamic stability of poly(ethylene terephthalate) degrading enzymes 研究融合伙伴对聚对苯二甲酸乙二醇酯降解酶的酶活性和热力学稳定性的影响
IF 3.4 3区 化学 Pub Date : 2024-05-17 DOI: 10.1039/d4fd00067f
Liliana Oliveira, Alex Cahill, Len Wuscher, Kerry Green, Victoria Bemmer, Bruce R. Lichtenstein
Plastics are a cornerstone of the modern world, yet the durable material properties that we have come to depend upon have made them recalcitrant environmental pollutants. Biological solutions in the form of engineered enzymes offer low energy and sustainable approaches to recycle and upcycle plastic waste, uncoupling their production and end of life from fossil fuels and greenhouse gases. These enzymes however, encounter immense challenges acting on plastics: facing hydrophobic surfaces, molecular crowding, and high levels of substrate heterogeneity. There have been mixed reports about the benefits of fusing partner domains to polyethylene terephthalate (PET) degrading enzymes, with moderate improvements identified under specific conditions, but no clarity into the factors that underlie the mechanisms. Here, we use the SpyCatcher003-SpyTag003 technology, which demonstrates a profound 47 °C shift in Tm upon irreversible complex formation, to investigate the influence of the thermal stability of the fusion partner on a range of PETases selected for their optimal reaction temperatures. We find that the thermal stability of the fusion partner does not have a positive correlation on the activity of the enzymes or their evident kinetic and thermal stabilities. Instead, it appears that the fusion to less stable SpyCatcher003 tends to increase the measured activation energy of unfolding compared to the more stable complex and wildtype enzymes. Despite this, the fusions to SpyCatcher003 do not show significantly better catalytic activity on PET films, with or without SpyTag003, and were found to be sometimes disruptive. The approach we highlight here, in using a fusion partner with controllable melting temperature, allowed us to dissect the impact of the stability of a fusion partner on enzyme properties. Although fusion stability did not appear to be coupled with identifiable trends in enzymatic activities, careful analysis of the unfolding pathways, and solid and solution activities of a wider range of enzymes may yield a more detailed understanding.
塑料是现代世界的基石,但我们赖以生存的耐用材料特性却使其成为顽固的环境污染物。以工程酶为形式的生物解决方案提供了低能耗和可持续的塑料废物回收和再循环方法,使塑料废物的生产和报废与化石燃料和温室气体脱钩。然而,这些酶在作用于塑料时遇到了巨大的挑战:面临疏水性表面、分子拥挤和底物的高度异质性。关于在聚对苯二甲酸乙二醇酯(PET)降解酶中融合伙伴结构域的益处,目前的报道不一,在特定条件下有适度的改善,但没有明确的机制基础因素。在这里,我们利用 SpyCatcher003-SpyTag003 技术研究了融合伙伴的热稳定性对一系列 PET 酶最佳反应温度的影响。我们发现,融合伙伴的热稳定性与酶的活性或其明显的动力学和热稳定性没有正相关。相反,与稳定性较低的 SpyCatcher003 融合后,与稳定性较高的复合酶和野生型酶相比,所测得的解折活化能往往会增加。尽管如此,与 SpyCatcher003 的融合在 PET 薄膜上并未显示出明显更好的催化活性,无论是否有 SpyTag003,并且发现有时具有破坏性。我们在此强调的方法是使用熔化温度可控的融合伙伴,这使我们能够剖析融合伙伴的稳定性对酶特性的影响。虽然融合稳定性似乎与酶活性的可识别趋势无关,但对更多酶的展开途径以及固体和溶液活性进行仔细分析,可能会产生更详细的了解。
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引用次数: 0
Ion Transport in Polymerized Ionic Liquids: a Comparison of Polycation and Polyanion Systems 聚合离子液体中的离子传输:多阳离子和多阴离子体系的比较
IF 3.4 3区 化学 Pub Date : 2024-05-17 DOI: 10.1039/d4fd00070f
Javad Jeddi, Jukka Niskanen, Benoit Hugo Lessard, Joshua R. Sangoro
The correlation among chemical structure, mesoscale structure, and ion transport in 1,2,3-triazole-based polymerized ionic liquids (polyILs) featuring comparable polycation and polyanion backbones is investigated by wide-angle X-ray scattering (WAXS), differential scanning calorimetry, and broadband dielectric spectroscopy (BDS). Above the glass transition temperature, Tg, higher ionic conductivity is observed in polycation polyILs compared to their polyanion counterparts, and ion conduction is enhanced by increasing the counterion volume in both polycation or polyanion polyILs. Below Tg, polyanions show lower activation energy associated with ion conduction. However, the validity of the Barton-Nakajima-Namikawa relation indicates that hopping conduction is the dominant charge transport mechanism in all the polyILs studied. While a significant transition from a Vogel-Fulcher-Tammann to Arrhenius type of thermal activation is observed below Tg, the decoupling index, often used to quantify the extent to which segmental dynamics and ion conduction are correlated, remains unaltered for the polyILs studied, suggesting that this index may not be a general parameter to characterize charge transport in polymerized ionic liquids. Furthermore, detailed analyses of the WAXS results indicate that both the mobile ion type and the structure of the pendant groups control mesoscale organization. These findings are discussed within the framework of recent models, which account for the subtle interplay between electrostatic and elastic forces in determining ion transport in polyILs. The findings demonstrate the intricate balance between the chemical structure and interactions in polyILs that determine ion conduction in this class of polymer electrolytes.
本文通过广角 X 射线散射 (WAXS)、差示扫描量热法和宽带介电光谱 (BDS) 研究了具有可比多阳离子和多阴离子骨架的 1,2,3-三唑基聚合离子液体(polyILs)中化学结构、中尺度结构和离子传输之间的相关性。在玻璃转化温度(Tg)以上,多阳离子聚绝缘体的离子传导性高于多阴离子聚绝缘体,而且在多阳离子或多阴离子聚绝缘体中,离子传导性会随着反离子体积的增加而增强。在 Tg 值以下,多阳离子显示出较低的离子传导活化能。然而,Barton-Nakajima-Namikawa 关系的有效性表明,在所研究的所有聚硅氧烷中,跳动传导是最主要的电荷传输机制。虽然在温度低于 Tg 时,可以观察到从 Vogel-Fulcher-Tammann 型热激活向 Arrhenius 型热激活的明显转变,但通常用于量化段动力学和离子传导相关程度的解耦指数在所研究的聚合离子液体中保持不变,这表明该指数可能不是表征聚合离子液体中电荷传输的通用参数。此外,对 WAXS 结果的详细分析表明,移动离子类型和悬垂基团的结构都控制着中尺度组织。我们在最新模型的框架内讨论了这些发现,这些模型解释了静电力和弹性力在决定聚合离子液体中离子传输时的微妙相互作用。研究结果表明,聚离子电解质中的化学结构与相互作用之间存在着错综复杂的平衡关系,而这种平衡关系决定着这类聚合物电解质中的离子传导。
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Faraday Discussions
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