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Restriction fragment length polymorphism. 限制性片段长度多态性。
Pub Date : 2020-02-02 DOI: 10.1016/B978-0-12-374984-0.01314-0
B. Mittal, P. Chaturvedi, Sonam Tulsyan
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引用次数: 1
Increased Frequency of the C3*F Allele and the Leiden Mutation of Coagulation Factor V in Patients with Severe Coronary Heart Disease Who Survived Myocardial Infarction 心肌梗死后重症冠心病患者C3*F等位基因和凝血因子V Leiden突变频率升高
Pub Date : 2002-02-01 DOI: 10.1159/000049199
A. Császár, J. Duba, B. Melegh, J. Kramer, C. Szalai, Z. Prohászka, I. Karádi, M. Kovács, K. Méhes, L. Romics, G. Füst
The aim of the present study was to compare the frequencies of the F allele of C3 complement component and the Leiden mutation of coagulation factor V in patients with severe coronary heart disease (CHD) who survived myocardial infarction (MI; group A), and those who had no MI in their case history (group B). We have determined the C3 allele frequencies by electrophoresis, and Leiden mutation by PCR in 338 patients with severe CHD and in 490 and 523 healthy controls, respectively. The C3*F allele frequency was significantly (p = 0.006) higher in group A (0.213) that in group B (0.132). A significant (p = 0.045) difference was found between ≤60-year group A (0.077) and group B (0.029) patients in the frequency of Leiden mutation. These findings indicate that the C3*F allele and the Leiden mutation may be associated with an increased risk of developing myocardial infarction in CHD patients.
本研究的目的是比较C3补体成分F等位基因和凝血因子V Leiden突变在心肌梗死(MI;A组)和病史中无心肌梗死者(B组)。我们分别用电泳法测定了338例重度冠心病患者和490例和523例健康对照者的C3等位基因频率,用PCR法测定了Leiden突变。A组C3*F等位基因频率(0.213)显著高于B组(0.132),差异有统计学意义(p = 0.006)。≤60岁的A组(0.077)与B组(0.029)患者的Leiden突变频率差异有统计学意义(p = 0.045)。这些发现表明C3*F等位基因和Leiden突变可能与冠心病患者发生心肌梗死的风险增加有关。
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引用次数: 14
Oligonucleotide Fishing for STAT6: Cross-Talk between IL-4 and Chemokines STAT6的寡核苷酸捕捞:IL-4和趋化因子之间的串扰
Pub Date : 2002-02-01 DOI: 10.1159/000049202
K. W. Eriksen, M. Nielsen, K. Kaltoft, A. Svejgaard, M. H. Nissen, C. Röpke, N. Ødum
Signal transducer and activator of transcription 6 (STAT6) is essential for the biological activities of interleukin-4 (IL-4) and the development of allergic responses in mice. Here we report on a sensitive and specific assay for STAT6 activation in response to IL-4. We took advantage of double-stranded oligonucleotide probes containing a STAT6-binding gene-sequence from the promotor of the immunoglobulin heavy chain germline Ε transcript to study the IL-4-induced DNA binding of STAT6. Using these probes, we show that repeated adjacent STAT6-binding sites result in enhanced STAT6-DNA binding. Moreover, the distance between the binding sites is critical for STAT-DNA binding, i.e. STAT6 binding is decreased at distances above 20 nucleotides between neighbouring binding sites. Using this assay to study cross-talk between IL-4 and chemokines, we provide evidence that MIP-1β and MIG inhibit IL-4-induced STAT6 activation, whereas other chemokines and cytokines do not. In conclusion, our data show that oligonucleotide fishing is a supplementary tool for studying cytokine cross-talk at a genomic level.
信号转导因子和转录激活因子6 (STAT6)对白细胞介素-4 (IL-4)的生物活性和小鼠过敏反应的发生至关重要。在这里,我们报告了一种敏感和特异性的检测STAT6激活对IL-4的反应。我们利用含有来自免疫球蛋白重链种系Ε转录物启动子的STAT6结合基因序列的双链寡核苷酸探针来研究il -4诱导的STAT6的DNA结合。使用这些探针,我们发现重复相邻的stat6结合位点导致STAT6-DNA结合增强。此外,结合位点之间的距离对于STAT-DNA结合至关重要,即相邻结合位点之间超过20个核苷酸的距离会降低STAT6的结合。通过该实验研究IL-4和趋化因子之间的串扰,我们发现MIP-1β和MIG抑制IL-4诱导的STAT6激活,而其他趋化因子和细胞因子则没有。总之,我们的数据表明,寡核苷酸捕捞是在基因组水平上研究细胞因子串扰的补充工具。
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引用次数: 6
In situ Activated Intestinal T Cells Expanded in vitro – without Addition of Antigen – Produce IFN-γ and IL-10 and Preserve Their Function during Growth 原位激活的肠T细胞体外扩增-不添加抗原-产生IFN-γ和IL-10并在生长过程中保持其功能
Pub Date : 2002-02-01 DOI: 10.1159/000049200
J. Agnholt, K. Kaltoft
Objective: The balance between mucosal CD4+ T cells producing IFN-γ or IL-10 is essential in the maintenance of intestinal homeostasis. We aimed to investigate how in situ activated T cells were expanded in vitro according to a new cell culture protocol and if it selected for continuous clonal CD4+ T cells capable of producing mainly IFN-γ or IL-10. Methods: T cell cultures were established from colonic biopsy specimens of 27 patients with Crohn’s disease and from 10 healthy controls in a medium supplemented with IL-2 and IL-4 but without addition of exogenous antigen or mitogen. Cytokine production was measured after stimulation (IL-12, super antigen) and inhibition (ciclosporin and methylprednisolone). Results: Cytokine production was increased in cultures from patients with Crohn’s disease compared to controls (IFN-γ, p = 0.005; IL-10, p = 0.003; TNF-α, p = 0.03). Early cultures were highly responsive to IL-12 stimulation. We established CD4+ T-cell clones escaping cellular senescence with an inflammatory or regulatory cytokine profile. Discussion: The data indicate that cultures of in situ activated inflammatory and regulatory subpopulations of intestinal T lymphocytes with pathogenic importance in Crohn’s disease can be established preserving their functional properties during growth.
目的:粘膜CD4+ T细胞产生IFN-γ或IL-10之间的平衡在维持肠道稳态中至关重要。我们的目的是研究原位活化T细胞是如何根据新的细胞培养方案在体外扩增的,以及它是否被选择为能够主要产生IFN-γ或IL-10的连续克隆CD4+ T细胞。方法:选取27例克罗恩病患者和10例健康对照者的结肠活检标本,在添加IL-2和IL-4但不添加外源抗原或丝裂原的培养基中培养T细胞。在刺激(IL-12,超抗原)和抑制(环孢素和甲基强的松龙)后测量细胞因子的产生。结果:与对照组相比,克罗恩病患者培养物中细胞因子的产生增加(IFN-γ, p = 0.005;IL-10, p = 0.003;TNF-α, p = 0.03)。早期培养物对IL-12刺激反应强烈。我们建立了CD4+ t细胞克隆逃避细胞衰老与炎症或调节细胞因子谱。讨论:这些数据表明,在克罗恩病中具有致病性重要性的肠道T淋巴细胞原位激活炎症和调节亚群的培养可以在生长过程中保持其功能特性。
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引用次数: 18
Author Index Vol. 18, 2001 作者索引2001年第18卷
Pub Date : 2002-02-01 DOI: 10.1159/000049205
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引用次数: 0
Incorporation of Long CDR3s into V Domains: Implications for the Structural Evolution of the Antibody-Combining Site 长CDR3s整合到V结构域:对抗体结合位点结构进化的影响
Pub Date : 2002-02-01 DOI: 10.1159/000049197
P. Ramsland, A. Kaushik, J. Marchalonis, A. Edmundson
Available data suggest that ‘primitive’ antibody-combining sites often include longer than average HCDR3s. Long HCDR3 sequences have been reported in diverse vertebrates, including humans, cattle, camels and sharks. These long HCDR3 segments contain unusual sequence features such as stretches of Gly or Pro residues and multiple Cys residues. We examined how longer than average HCDR3s were accommodated in the V domains of human, murine and camel antibodies with known three-dimensional structures. The main conclusions were that (1) HCDR3s longer than 12 residues should protrude outward from the V domains; (2) descending HCDR3 polypeptides may utilize VL (including LCDR3) constituents as a platform, supporting the protruding segments; (3) intra- and inter-HCDR disulfides are frequently formed to rigidify the structure of HCDR3 or the combining site, and (4) V and C domains were possibly more similar in primordial antibodies than they are in their present day counterparts.
现有数据表明,“原始”抗体结合位点通常比平均hcdr3更长。据报道,HCDR3长序列存在于多种脊椎动物中,包括人类、牛、骆驼和鲨鱼。这些长HCDR3片段包含不寻常的序列特征,如Gly或Pro残基的延伸和多个Cys残基。我们研究了HCDR3s在已知三维结构的人、鼠和骆驼抗体的V结构域中的平均容纳时间。主要结论是:(1)长度大于12个残基的HCDR3s应该从V结构域向外突出;(2)下行HCDR3多肽可以利用VL(包括LCDR3)成分作为平台,支撑突出的片段;(3) hcdr内和hcdr间的二硫化物经常形成,以使HCDR3或结合位点的结构硬化;(4)原始抗体中的V和C结构域可能比现在的对应物更相似。
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引用次数: 48
Nomenclature of the Human Immunoglobulin Lambda (IGL) Genes 人免疫球蛋白Lambda (IGL)基因命名法
Pub Date : 2002-02-01 DOI: 10.1159/000049203
M. Lefranc
‘Nomenclature of the Human Immunoglobulin Lambda (IGL) Genes’, the 18th report of the ‘IMGT Locus in Focus’ section, provides the first complete list of all the human IGL genes. The total number of human IGL genes per haploid genome is 87–96 (93–102 if the orphons are included), of which 37–43 genes are functional. IMGT/Human Genome Organization (HUGO) gene names and definitions of the human IGL genes on chromosome 22q11.2 and IGL orphons on chromosomes 8 and 22 are provided with the gene functionality and the number of alleles, according to the rules of the IMGT Scientific chart, with the accession numbers of the IMGT reference sequences and with the accession ID of the Genome Database GDB and NCBI LocusLink databases, in which all the IMGT human IGL genes have been entered. The tables are available at the IMGT Marie-Paule page of IMGT, the international ImMunoGeneTics database (http://imgt.cines.fr) created by Marie-Paule Lefranc, Université Montpellier II, CNRS, France.
“人类免疫球蛋白Lambda (IGL)基因命名法”是“IMGT基因座焦点”部分的第18篇报告,提供了所有人类IGL基因的第一个完整列表。每个单倍体基因组的IGL基因总数为87-96个(如果包括孤儿,则为93-102个),其中37-43个基因是功能性的。第22q11.2号染色体上的人类IGL基因和第8、22号染色体上的IGL孤儿的IMGT/Human Genome Organization (HUGO)基因名称和定义,根据IMGT Scientific chart的规则,提供基因功能和等位基因数量,IMGT参考序列的加入号和基因组数据库GDB和NCBI LocusLink数据库的加入ID,其中已输入所有IMGT人类IGL基因。这些表格可在国际免疫遗传学数据库IMGT的IMGT Marie-Paule页面(http://imgt.cines.fr)上获得,该数据库由法国蒙彼利埃第二大学的Marie-Paule Lefranc创建。
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引用次数: 68
Analysis of the Sequence Polymorphism within Class II Transactivator Gene Promoters ⅱ类反激活基因启动子序列多态性分析
Pub Date : 2002-02-01 DOI: 10.1159/000049198
M. Janitz, L. Reiners-Schramm, A. Muhlethaler‐Mottet, Mark Rosowski, R. Lauster
The class II transactivator is a major transcriptional factor acting on the promoters of MHC class II genes. Transcription of the CIITA gene is driven by four alternative promoters, which exhibit cell-type-specific activity. The CIITA promoter III (PIII) is constitutively active in B cells, whereas promoter IV (PIV) becomes activated upon interferon-γ activation. The aim of this study was to investigate whether these two promoters exhibit a sequence variability like the MHC class II promoters do. We isolated PIII and PIV fragments from healthy individuals and rheumatoid arthritis patients and screened them for sequence polymorphisms. Single base pair substitutions within the CIITA PIV were found in 9% of the individuals analyzed. The majority of the substitutions were located upstream of the known cis-acting elements of the promoter. PIII was non-polymorphic. To evaluate the functional relevance of the detected polymorphism we cloned variable PIV upstream of the luciferase reporter gene. Such prepared constructs were transfected into monocytes, melanoma and HeLa cells, which were subsequently stimulated with interferon-γ. The analysis of promoter activities did not reveal significant differences in all three cell types. We conclude that the level of CIITA expression does not vary within the population. Thus the differences in the level of MHC class II expression, which are observed between individuals, stem for the polymorphisms of the MHC class II promoters themselves.
II类反激活子是作用于MHC II类基因启动子的主要转录因子。CIITA基因的转录由四种不同的启动子驱动,这些启动子表现出细胞类型特异性活性。CIITA启动子III (PIII)在B细胞中具有组成性活性,而启动子IV (PIV)在干扰素-γ激活时被激活。本研究的目的是调查这两个启动子是否像MHC II类启动子一样表现出序列变异性。我们从健康个体和类风湿关节炎患者中分离PIII和PIV片段,并筛选它们的序列多态性。在CIITA PIV中发现9%的个体存在单碱基对替换。大多数取代位点位于启动子已知的顺式作用元件的上游。PIII是非多态性的。为了评估检测到的多态性的功能相关性,我们克隆了荧光素酶报告基因上游的PIV变量。将这些制备好的构建体转染到单核细胞、黑色素瘤和HeLa细胞中,随后用干扰素-γ刺激这些细胞。对启动子活性的分析并没有显示出三种细胞类型的显著差异。我们得出结论,CIITA表达水平在人群中没有变化。因此,在个体之间观察到的MHC II类表达水平的差异源于MHC II类启动子本身的多态性。
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引用次数: 13
Contents Vol. 18, 2001 目录2001年第18卷
Pub Date : 2002-02-01 DOI: 10.1159/000049207
K. Bauer, M. Janitz, L. Reiners-Schramm, A. Mühlethaler-Mottet, Mark Rosowski, R. Lauster, J. Agnholt, K. Kaltoft, K. W. Eriksen, M. Nielsen, K. Kaltoft, A. Svejgaard, M. Nissen, C. Röpke, N. Ødum, Christèle Martinez-Jean, G. Folch, M. Lefranc, P. Ramsland, A. Kaushik, J. Marchalonis, A. Edmundson, A. Császár, J. Duba, B. Melegh, J. Kramer, C. Szalai, Z. Prohászka, I. Karádi, M. Kovács, K. Méhes, L. Romics, G. Füst, H. Takeshita, T. Yasuda, E. Nakazato, T. Nakajima, Shinjiro Mori, K. Mogi, Y. Kaneko, R. Iida, K. Kishi
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引用次数: 0
Use of Human Recombinant DNase I Expressed in COS-7 Cells as an Immunogen to Produce a Specific Anti-DNase I Antibody 利用COS-7细胞中表达的重组人dna酶I作为免疫原产生特异性抗dna酶I抗体
Pub Date : 2002-02-01 DOI: 10.1159/000049201
H. Takeshita, T. Yasuda, E. Nakazato, T. Nakajima, S. Mori, K. Mogi, Y. Kaneko, R. Iida, K. Kishi
To obtain human deoxyribonuclease I (DNase I) as an immunogen, we have developed a procedure that is more useful and effective than the conventional procedure, which uses human urine as a starting material. In the new procedure, we culture COS-7 cells transfected with expression vector carrying human DNase I cDNA, and then purify the enzyme from the culture medium. The enzyme can be easily isolated to apparent homogeneity by passage through only three chromatography columns. The rabbit antiserum that we used against the recombinant DNase I was not inferior to that used against DNase I from human urine, in terms of both its ability to discriminate DNase I phenotypes and its ability to neutralize enzyme activity. Therefore, our procedure may be useful for producing an antibody specific for human DNase I.
为了获得人类脱氧核糖核酸酶I (DNase I)作为免疫原,我们开发了一种比传统方法更有用和有效的方法,该方法使用人类尿液作为起始材料。在新的方法中,我们用转染了人dna酶I cDNA表达载体的COS-7细胞进行培养,然后从培养基中纯化酶。该酶可以很容易地分离到明显的均匀性,只需通过三层色谱柱。在区分DNase I表型的能力和中和酶活性的能力方面,我们使用的兔抗血清对重组DNase I的抗血清并不亚于对人尿DNase I的抗血清。因此,我们的方法可能对生产人类dna酶I特异性抗体有用。
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引用次数: 8
期刊
Experimental and clinical immunogenetics
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