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Are there long-term temporal trends of size composition and the length– weight relationship? Results for chokka squid Loligo reynaudii during the peak spawning season off the south coast of South Africa 尺寸组成和长重关系是否存在长期的时间趋势?在南非南部海岸的产卵高峰期,chokka鱿鱼Loligo reynaudi的结果
IF 1.2 4区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2021-04-03 DOI: 10.2989/1814232X.2021.1916591
M. Lipiński, MA Mmethi, D. Yemane, J. Githaiga-Mwicigi, W. Sauer
Temporal trends in the size composition (length frequency) and length–weight (L–W) relationship of chokka squid Loligo reynaudii on the south coast of South Africa were assessed over periods spanning 22 years: length frequencies from 1996 to 2017 (with 15 years represented); and L–W relationships over 9 years between 1994 and 2016. To allow for comparison, identical data selection and processing was adopted for all years considered (i.e. identical period of 60 days in spring–summer; the same depths and areas; chokka with empty stomachs; and squid of the same maturity stage). Although there were no significant long-term temporal trends in the mean lengths, there was a significant short-term drop in the mean lengths over the years 2014–2017 (especially in females), which could not be attributed with certainty to any cause. A tentative explanation is that this drop might be linked to the introduction of an additional closed season in these years. The estimated parameters of the L–W relationship also revealed no trend over the years considered. Investigation of the caecum colour, which indicates the state of starvation (white: 8 h on average after food ingestion; yellow: 6 to 7 h after food ingestion), showed significantly more starving males than starving females. Starvation of males on the spawning grounds might be associated with the spawning behaviour of chokka.
评估了南非南海岸chokka鱿鱼Loligo reynaudi的大小组成(长度-频率)和长度-重量(L-W)关系的时间趋势,时间跨度为22年:1996年至2017年的长度频率(代表15年);以及1994年至2016年间长达9年的L–W关系。为了进行比较,对所考虑的所有年份都采用了相同的数据选择和处理(即,春季至夏季60天的相同时期;相同的深度和面积;空腹的chokka;以及相同成熟阶段的鱿鱼)。尽管平均长度没有显著的长期时间趋势,但在2014-2017年期间,平均长度出现了显著的短期下降(尤其是女性),这不能肯定归因于任何原因。一个初步的解释是,这一下降可能与这些年额外引入的禁渔季节有关。L–W关系的估计参数也没有显示出所考虑年份的趋势。盲肠颜色的调查表明了饥饿状态(白色:食物摄入后平均8小时;黄色:食物摄入后六至七小时),表明饥饿的雄性明显多于饥饿的雌性。产卵场雄性的饥饿可能与乔卡的产卵行为有关。
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引用次数: 0
The influence of estuary eutrophication on the benthic diatom community: a molecular approach 河口富营养化对底栖硅藻群落的影响:分子方法
IF 1.2 4区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2021-04-03 DOI: 10.2989/1814232X.2021.1897039
M. Nunes, D. Lemley, G. Matcher, J. Adams
The occurrence of harmful algal blooms (HABs) is increasing in frequency and intensity in South African estuaries because of eutrophication. This study used DNA metabarcoding to identify the benthic diatom community structure in the eutrophic Sundays Estuary. The recurrent HAB phytoplankton species Heterosigma akashiwo was recorded at bloom concentrations (∼100 µg Chl a l−1) in the brackish, vertically stratified middle reaches of the estuary. In contrast, microphytobenthos biomass increased towards the upper reaches in response to elevated availability of total oxidised nitrogen (NOx) and increased sediment stability. A total of 76 diatom species were identified using the molecular technique. Seven known nutrient-tolerant diatom species indicate a preference for either ammonium or NOx enrichment. Benthic diatom community diversity (H′ < 1) and evenness (J′ < 0.25) were low in the brackish middle reaches of the estuary, where the HABs decreased available light. Heterosigma akashiwo has been found in previous studies to suppress the growth of co-occurring taxa. Future research efforts should focus on verifying this relationship over seasonal timescales given the dominance of H. akashiwo in spring/summer. As the persistently nutrient-enriched state and stable flow conditions of the Sundays Estuary is the key driver of change, management efforts should be geared towards re-establishing the estuary’s natural flow variations and to measures that can mitigate nutrient pollution.
由于富营养化,南非河口有害藻华的发生频率和强度都在增加。本研究利用DNA代谢编码技术对富营养化Sundays河口的底栖硅藻群落结构进行了鉴定。在河口半咸水、垂直分层的中游地区,记录到赤潮浓度为(~100µg Chl a l−1)的赤潮浮游植物物种Heterosigma akashiwo。相比之下,由于总氧化氮(NOx)的可用性提高和沉积物稳定性增加,向上游方向的微型底栖生物生物生物量增加。利用分子技术共鉴定出76种硅藻。七种已知的耐营养硅藻物种表明它们更喜欢富集铵或NOx。河口半咸水中游底栖硅藻群落多样性(H′<1)和均匀度(J′<0.025)较低,赤潮降低了可用光。在以前的研究中已经发现赤尾异西格玛可以抑制共存类群的生长。鉴于H.akashiwo在春季/夏季占主导地位,未来的研究工作应侧重于在季节性时间尺度上验证这种关系。由于Sundays河口持续的营养丰富状态和稳定的水流条件是变化的关键驱动力,管理工作应致力于重建河口的自然流量变化,并采取措施减轻营养污染。
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引用次数: 3
When cooling is worse than warming: investigations into the thermal tolerance of an endemic reef fish, Boopsoidea inornata 当冷却比变暖更糟糕时:对一种地方性珊瑚鱼的耐热性的调查
IF 1.2 4区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2021-04-03 DOI: 10.2989/1814232X.2021.1922501
C. Allison, C. Muller, A. Childs, W. Froneman, L. Bailey, W. Potts
Recent investigations suggest that global warming is likely to alter temperature regimes along the southeastern coastline of South Africa through the increased frequency of upwelling events. Identifying thermal thresholds is fundamental in predicting the response of marine ectotherms to rapidly changing ocean temperatures. The aim of this study was to determine the thermal tolerance of the endemic sparid Boopsoidea inornata. To achieve this, 20 wild fish were captured from near Noordhoek in Gqeberha (Port Elizabeth). The fish were exposed to laboratory-simulated upwelling and heat-plume conditions until sublethal endpoints were identified to estimate the critical lower (CTmin) and critical upper (CTmax) thermal limits, respectively. During the simulated cooling or heating events, the opercular beat (OB) rates were recorded, their sublethal endpoints (loss of equilibrium) were identified, and their CTmin and CTmax were estimated. Breakpoint analyses of the OB rates identified the lower and upper thermal stress limits to occur at an average of 9 °C and 25 °C, respectively. The CTmin was estimated to be 7.8 °C and the CTmax 30 °C. When compared with in situ temperatures, these limits suggest that B. inornata is susceptible to small reductions in the minimum temperature. Given that the frequency and magnitude of upwelling events are expected to increase in response to global warming, this may have significant consequences for this and other sympatric, resident species.
最近的调查表明,全球变暖可能会通过上升流事件的频率增加而改变南非东南海岸线的温度状况。识别热阈值是预测海洋外胚层对快速变化的海洋温度的反应的基础。本研究的目的是确定地方性斯巴达虫的耐热性。为此,在Gqeberha(伊丽莎白港)的诺德霍克附近捕获了20条野生鱼类。这些鱼暴露在实验室模拟的上升流和热羽流条件下,直到确定亚致死终点,分别估计临界下限(CTmin)和临界上限(CTmax)。在模拟的冷却或加热事件中,记录顶盖搏动(OB)率,确定其亚致死终点(平衡损失),并估计其CTmin和CTmax。OB速率的断点分析确定了平均温度分别为9°C和25°C时出现的热应力下限和上限。CTmin估计为7.8°C,CTmax估计为30°C。当与现场温度相比时,这些极限值表明,B.inornata容易受到最低温度小幅降低的影响。鉴于上升流事件的频率和规模预计将随着全球变暖而增加,这可能会对该物种和其他同域的常驻物种产生重大影响。
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引用次数: 1
Movement patterns and growth rate of the whitespotted wedgefish Rhynchobatus djiddensis in southern Africa based on tag-recapture data 基于标签重捕数据的非洲南部白斑楔鱼运动模式和生长率
IF 1.2 4区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2021-04-03 DOI: 10.2989/1814232X.2021.1906318
G. Jordaan, B. Mann, R. Daly, S. Dunlop, P. Cowley
Information on the movement ecology of endangered species is critical for the implementation of effective conservation measures. This study made use of a long-term dart tagging dataset to reveal the movement patterns and growth rates of two size classes of the Critically Endangered whitespotted wedgefish Rhynchobatus djiddensis within its southern African distribution, which can have important implications for fisheries management. A total of 4 768 individuals were tagged with 340 recaptures recorded, ranging from 1 to 2 639 days (7.2 years) at liberty. Most of the tag releases and recaptures occurred within the KwaZulu-Natal central region in South Africa, with catches increasing significantly during summer (October to March). Most recaptures (43%) were recorded within 5 km of the tagging (release) site. Tagged adults recorded significantly greater distances moved than juveniles (p < 0.002) but there was no significant difference between juveniles or adults in terms of their direction of movement (p > 0.30). A Francis growth model showed that smaller individuals had a substantially faster growth rate (198.69 [SE 21.75] mm year−1) compared with larger individuals (57.41 [SE 27.83] mm year−1) confirming that the species is relatively slow-growing. Ultimately, this study identified important knowledge gaps in the broadscale movement patterns of R. djiddensis and provided new information on the growth rate of this Critically Endangered species. Filling in these knowledge gaps will aid in conservation measures for two important size classes of the R. djiddensis population as the species faces increasing targeted fishing pressure.
关于濒危物种运动生态学的信息对于实施有效的保护措施至关重要。本研究利用长期飞镖标记数据,揭示了非洲南部分布的极度濒危白斑楔鱼(Rhynchobatus djiddensis)的两种大小类别的运动模式和增长率,这对渔业管理具有重要意义。共标记了4768只个体,记录了340次重新捕获,自由时间从1天到2639天(7.2年)不等。大多数释放标签和重新捕获发生在南非夸祖鲁-纳塔尔省中部地区,在夏季(10月至3月)捕获量显著增加。大多数捕获(43%)记录在标记(释放)地点5公里范围内。标记成虫的移动距离明显大于幼虫(p < 0.002),但幼虫和成虫在移动方向上无显著差异(p < 0.30)。Francis生长模型表明,小个体的生长速率(198.69 [SE 21.75] mm /年)明显快于大个体(57.41 [SE 27.83] mm /年),表明该物种生长相对缓慢。最终,本研究确定了吉毛鼠大规模迁移模式的重要知识空白,并为这一极危物种的生长速度提供了新的信息。填补这些知识空白将有助于采取保护措施,以保护两种重要大小类别的吉齿鼠种群,因为该物种面临越来越大的目标捕捞压力。
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引用次数: 4
Comparison of the particle size distributions of sediment collected from sandy seafloor using a Van Veen grab and cone dredge 用范维恩抓斗和锥形挖泥船从沙质海底收集的沉积物的粒度分布比较
IF 1.2 4区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2021-04-03 DOI: 10.2989/1814232X.2021.1902855
G. van der Heever, L. Atkinson, Ceo von der Meden
Sediment particle size is an important environmental parameter that influences benthic species composition and is frequently used in habitat and ecosystem classification systems. In South Africa, benthic grabs are regularly used to collect seafloor sediment samples for particle size analysis. However, grab sample failures are a common, time-consuming and costly exercise, particularly in deep-sea work. This study compares replicate sediment samples collected using a custom-designed cone dredge and a conventional Van Veen grab, deployed at nine stations, ranging from 355 to 508 m in depth, in the Southern Benguela Sandy Shelf Edge ecosystem off the west coast of South Africa. No significant differences were detected between sediment properties of the samples collected by the different devices (all grain size categories [particles <3.9 to >2 000 μm]: D = 0.101, p = 0.693; fine grain size categories [particles ≤63 μm]: D = 0.177, p = 0.480). This finding suggests that, despite its different mode of operation, the cone dredge collected an appropriate sediment sample for a particle size analysis of this ecosystem, and thus the device might be usefully applied in other areas of a similar nature. The cone dredge can be considered a cost-effective and efficient alternative for sampling seafloor sediment at depth. However, further comparative analyses are required for different substrates and ecosystem types.
沉积物颗粒大小是影响底栖物种组成的一个重要环境参数,经常用于栖息地和生态系统分类系统。在南非,海底抓斗经常被用来收集海底沉积物样本,用于粒度分析。然而,抓取样本失败是一种常见的、耗时且成本高昂的操作,尤其是在深海工作中。这项研究比较了使用定制设计的锥形挖泥船和传统的Van Veen抓斗收集的重复沉积物样本,该抓斗部署在南非西海岸南本格拉Sandy Shelf Edge生态系统的九个站点,深度从355米到508米不等。不同装置采集的样品的沉积物性质没有显著差异(所有粒度类别[颗粒2000μm]:D=0.101,p=0.693;细粒度类别[颗粒≤63μm]:D=0.177,p=0.480)。这一发现表明,尽管其操作模式不同,锥形挖泥船收集了适当的沉积物样本,用于对该生态系统进行粒度分析,因此该设备可能会在其他类似性质的地区有用。锥形挖泥船可以被认为是一种具有成本效益和高效的海底沉积物取样替代方案。然而,需要对不同的基质和生态系统类型进行进一步的比较分析。
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引用次数: 1
Evaluating Kenya’s coastal gillnet fishery: trade-offs in recommended mesh-size regulations 评估肯尼亚沿海刺网渔业:建议网目大小法规的权衡
IF 1.2 4区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2021-04-03 DOI: 10.2989/1814232x.2021.1945798
K. Osuka, J. Kawaka, M. Samoilys
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引用次数: 0
Metabarcoding of marine zooplankton in South Africa 南非海洋浮游动物的代谢编码
IF 1.2 4区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2021-04-03 DOI: 10.2989/1814232X.2021.1919759
S. Singh, J. Groeneveld, J. Huggett, D. Naidoo, R. Cedras, S. Willows‐Munro
Metabarcoding is an emerging method in which DNA barcoding is combined with next-generation sequencing to determine the biodiversity of taxonomically complex samples. We assessed the current state of DNA barcode reference databases for marine zooplankton in South Africa and undertook a metabarcoding analysis to determine the species composition of samples collected with plankton tow nets. Analysis of DNA sequences mined from the literature and in online barcode reference databases revealed incomplete records for all taxa examined. Barcode records were dominated by meroplanktonic species with commercially important life-history phases (fishes and decapod crustaceans) and by species occurring in easily accessible nearshore habitats. Holoplanktonic species were underrepresented, despite making up the bulk of zooplankton biodiversity, including most potential indicator species. Metabarcoding analysis of plankton samples could identify 45% of amplicon sequence variants to species level based on BOLD databases (123 species) and similar numbers using GenBank and the MIDORI COI classifier. Morphological analysis of samples could not achieve comparable resolution at species level, but with some exceptions it recovered similar classes of organisms to those found by metabarcoding. The need for integrative molecular/morphological studies to increase and validate barcode reference databases of key zooplankton taxa is recognised. Metabarcoding of marine zooplankton in South Africa has now been successfully undertaken and the methodology is expected to facilitate high-resolution monitoring of zooplankton biodiversity in pelagic ecosystems and accelerate the discovery of new species.
代谢条形码是一种新兴的方法,将DNA条形码与下一代测序相结合,以确定分类复杂样本的生物多样性。我们评估了南非海洋浮游动物DNA条形码参考数据库的现状,并进行了代谢条形码分析,以确定用浮游生物拖网收集的样本的物种组成。对从文献和在线条形码参考数据库中挖掘的DNA序列的分析显示,所检查的所有分类群的记录都不完整。条形码记录主要是具有重要商业生活史阶段的部分浮游物种(鱼类和十足目甲壳类动物),以及出现在容易到达的近岸栖息地的物种。尽管浮游动物物种(包括大多数潜在的指示物种)占浮游动物生物多样性的大部分,但其代表性不足。基于BOLD数据库(123个物种)和使用GenBank和MIDORI COI分类器的类似数量,浮游生物样本的代谢编码分析可以识别45%的扩增子序列变体。样本的形态学分析无法在物种水平上获得可比的分辨率,但除了一些例外,它恢复了与代谢条形码发现的类似类别的生物体。人们认识到,需要进行综合分子/形态学研究,以增加和验证关键浮游动物分类群的条形码参考数据库。南非海洋浮游动物的代谢编码现已成功进行,该方法有望促进对远洋生态系统中浮游动物生物多样性的高分辨率监测,并加速发现新物种。
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引用次数: 7
Corrigendum 勘误表
IF 1.2 4区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2021-04-03 DOI: 10.2989/1814232x.2021.1938384
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引用次数: 0
When the flathead mullet left St Lucia 当平头鲻鱼离开圣卢西亚时
IF 1.2 4区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2021-04-03 DOI: 10.2989/1814232X.2021.1927179
A. Whitfield
The St Lucia estuarine system on the east coast of South Africa is a declared World Heritage Site and Ramsar Site of International Importance. A major ecological feature of St Lucia during the last century was the annual spawning migration of the flathead mullet Mugil cephalus down the system in the first half of each year. Top predators, such as the African fish eagle Haliaeetus vocifer, white pelican Pelecanus onocrotalus, Nile crocodile Crocodylus niloticus and Zambezi shark Carcharhinus leucas, have made extensive use of adult M. cephalus as a food resource. With the advent of prolonged closure of the St Lucia mouth in the first decade of the 21st century, caused by the lack of St Lucia system connectivity with the Mfolozi River and a prolonged drought, this spawning migration has ceased to exist. The almost complete disappearance of M. cephalus was reinforced in the second decade of this century by a continued lack of any estuarine–marine connectivity. This loss of connectivity between Lake St Lucia and the sea for more than 12 years is longer than the normal life cycle of M. cephalus, and the possibility exists that the putative subpopulation of this species that occupied the system prior to the turn of the century may have been rendered locally extinct. In January 2021, the berm at the mouth of the estuary was artificially breached and the outflow of St Lucia estuarine waters into the sea occurred for the first time since 2002. However, it remains to be seen whether the recovery of the M. cephalus population to pre-2000 levels will occur over the short term (year) or longer term (decade). It is strongly recommended that an adaptive management strategy, rather than a fixed management approach, be adopted for the sake of future connectivity of the St Lucia system to the marine environment.
南非东海岸的圣卢西亚河口系统已被宣布为世界遗产和国际重要拉姆萨尔遗址。上个世纪,圣卢西亚的一个主要生态特征是每年上半年,平头乌鱼Mugil cephalus每年都会沿着该系统产卵迁徙。顶级掠食者,如非洲鱼鹰Haliaeetus vocifer、白鹈鹕Pelecanus onocrotalus、尼罗河鳄鱼Crocodylus niloticus和赞比西鲨鱼Carcharhinus leucas,已经广泛利用成年M.cephalus作为食物资源。由于圣卢西亚系统与Mfolozi河缺乏连通性和长期干旱,圣卢西亚河口在21世纪头十年长期关闭,这种产卵迁徙已经不复存在。在本世纪的第二个十年,由于河口-海洋连通性的持续缺乏,M.cephalus几乎完全消失。圣卢西亚湖与海洋之间的连通性丧失超过12年,这比M.cephalus的正常生命周期还要长,而且在本世纪之交之前占据该系统的该物种的假定亚群可能已经在当地灭绝。2021年1月,河口的护堤被人为破坏,圣卢西亚河口水域自2002年以来首次流入大海。然而,脑脊髓炎种群是否会在短期(一年)或长期(十年)内恢复到2000年前的水平还有待观察。强烈建议采取适应性管理战略,而不是固定的管理方法,以便圣卢西亚系统未来与海洋环境的连通性。
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引用次数: 8
Salt marsh erosion in a microtidal estuary 微潮河口的盐沼侵蚀
IF 1.2 4区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2021-04-03 DOI: 10.2989/1814232X.2021.1906319
T. Riddin, J. Adams
Salt marshes protect estuary banks from erosion by acting as buffers between marine and terrestrial environments. Residents living near the Breede River estuary, Western Cape Province, South Africa, raised concerns about ongoing erosion evident at Groenpunt, the main salt marsh. This study aimed to determine how long erosion has been taking place, the rate and possible causes thereof. Aerial images and environmental data were assessed for the years 2002–2020. Erosion was first evident in 2003. By 2020, the marsh edge had been eroded into a series of micro-bays, incised horizontally up to 7 m, with a scarp height of 0.7 m, corresponding to a loss of 1 313 m2 of salt marsh and a bank retreat rate of 0.66 (SE 0.44) m year−1. Over the study period, there was a regular pattern of high-frequency gale-force winds (>8 on the Beaufort scale), with significantly more winds of this magnitude occurring in 2002 than in other years. The wind wave fetch adjacent to the marsh is up to 1 km in the direction of the predominant wind, and it is likely that the cumulative effects of constant wind-generated waves drove the erosion process. Estuary water and tidal levels over the period reflected normal seasonal fluctuation patterns. The bank supporting Groenpunt salt marsh is eroding at a rate that could possibly see it disappear within the next 60 years, reducing biodiversity and ecosystem services in the estuary. In the face of increasing climatic variability predicted in the future, similar salt marsh erosion is likely to become more prevalent.
盐沼作为海洋和陆地环境之间的缓冲带,保护河口岸免受侵蚀。居住在南非西开普省布里德河河口附近的居民对主要盐沼Groenpunt的持续侵蚀表示担忧。这项研究旨在确定侵蚀发生的时间、速率和可能的原因。对2002-2020年的航空图像和环境数据进行了评估。侵蚀最早出现在2003年。到2020年,沼泽边缘已被侵蚀成一系列微湾,水平切割达7 m,崖高为0.7 m,相当于1 313 m2的盐沼损失和0.66 (SE 0.44) m的退缩率。在研究期间,有规律的高频大风模式(波弗特规模为bb80级),2002年发生的这种强度的风明显多于其他年份。沼泽附近的风浪向主导风方向移动可达1 km,可能是持续风浪的累积效应驱动了侵蚀过程。期间的河口水位和潮汐水平反映了正常的季节波动模式。支持格伦庞特盐沼的河岸正在以一种可能在未来60年内消失的速度受到侵蚀,从而减少了河口的生物多样性和生态系统服务。面对未来预测的日益增加的气候变化,类似的盐沼侵蚀可能会变得更加普遍。
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引用次数: 0
期刊
African Journal of Marine Science
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