Pub Date : 2025-12-17DOI: 10.1007/s10452-025-10247-1
Raquel de Brito, Claudia Padovesi-Fonseca, Renan de Souza Rezende
Zooplankton diversity is vital for functioning of aquatic ecosystems and plays a crucial role in the food chain. We studied the influence of environmental factors on taxonomic and functional diversity of zooplankton in Neotropical savanna streams (n = 21). We measured water characteristics, habitat features, and land use. Greater Normalized Difference Vegetation Index negatively correlated with functional richness indicating a greater traits variety. High percentage of fine sediments can lead to diminished habitat complexity, resulting in greater functional uniformity and Functional Divergence. This could suggest a higher level of regularity in the niche as indicated by the species’ functional space, reflected in Functional Evenness, despite further from the community’s overall mean, as indicated by Functional Divergence. We identified three main groups within the zooplankton community. The first consisted of larger organisms that were omnivorous or predatory in nature. The second comprised scrapers species, primarily herbivores typically found in streams with greater nutrients. The third consisted of smaller, filter-feeding species, primarily herbivores, which displayed adaptations for mesotrophic streams. Understanding the patterns of functional diversity in zooplankton is essential for comprehending their ecological dynamics and providing valuable information for effective conservation planning.
{"title":"Riparian vegetation and sediment composition shape the functional diversity of zooplankton in neotropical savannah streams","authors":"Raquel de Brito, Claudia Padovesi-Fonseca, Renan de Souza Rezende","doi":"10.1007/s10452-025-10247-1","DOIUrl":"10.1007/s10452-025-10247-1","url":null,"abstract":"<div><p>Zooplankton diversity is vital for functioning of aquatic ecosystems and plays a crucial role in the food chain. We studied the influence of environmental factors on taxonomic and functional diversity of zooplankton in Neotropical savanna streams (n = 21). We measured water characteristics, habitat features, and land use. Greater Normalized Difference Vegetation Index negatively correlated with functional richness indicating a greater traits variety. High percentage of fine sediments can lead to diminished habitat complexity, resulting in greater functional uniformity and Functional Divergence. This could suggest a higher level of regularity in the niche as indicated by the species’ functional space, reflected in Functional Evenness, despite further from the community’s overall mean, as indicated by Functional Divergence. We identified three main groups within the zooplankton community. The first consisted of larger organisms that were omnivorous or predatory in nature. The second comprised scrapers species, primarily herbivores typically found in streams with greater nutrients. The third consisted of smaller, filter-feeding species, primarily herbivores, which displayed adaptations for mesotrophic streams. Understanding the patterns of functional diversity in zooplankton is essential for comprehending their ecological dynamics and providing valuable information for effective conservation planning.</p></div>","PeriodicalId":8262,"journal":{"name":"Aquatic Ecology","volume":"60 1","pages":""},"PeriodicalIF":1.8,"publicationDate":"2025-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145778711","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Harmful algal blooms (HABs) frequently occur and cause extensive damage to fisheries in coastal areas around the world. Minimizing the deleterious impacts of HABs requires a better understanding of the eco-physiological characteristics of HAB species and effective techniques for predicting dominant HAB species. In western coastal Japan, two HAB species, Chattonella marina complex (hereafter Chattonella) and Karenia mikimotoi, appear in summer, but one species typically dominates, suggesting that one species may potentially suppress the growth of the other. To elucidate the developmental mechanisms of mono-specific blooms of Chattonella and K. mikimotoi, we investigated growth interactions between the two species using bi-algal cultures. Bi-algal cultures with nine combinations of initial cell densities showed that Chattonella significantly inhibited the growth of K. mikimotoi. These interactions were quantitatively analyzed using the Lotka–Volterra competition equation, which showed that both species exhibited a competitive effect on the other, but Chattonella exerted a stronger effect on K. mikimotoi. However, culture filtrates containing extracellular substances of one species did not affect the growth of the other, and no growth inhibition was observed when the two species were cultured together under non-contact conditions. In addition, bi-algal cultures using one of the two Chattonella strains exhibiting different degrees of superoxide (·O2−) production and K. mikimotoi demonstrated that, irrespective of ·O2− levels generated by Chattonella, the growth of K. mikimotoi declined similarly. These results indicate that direct contact with Chattonella cells, rather than extracellular allelopathic substances or ·O2− production, is central to cause the inhibition in K. mikimotoi.
{"title":"Growth interactions between the raphidophyte Chattonella marina complex and the dinoflagellate Karenia mikimotoi","authors":"Ryoko Yano, Saho Kitatsuji, Yuki Takai, Yasuhiro Yamasaki, Yohei Shimasaki, Tomoyuki Shikata","doi":"10.1007/s10452-025-10249-z","DOIUrl":"10.1007/s10452-025-10249-z","url":null,"abstract":"<div><p>Harmful algal blooms (HABs) frequently occur and cause extensive damage to fisheries in coastal areas around the world. Minimizing the deleterious impacts of HABs requires a better understanding of the eco-physiological characteristics of HAB species and effective techniques for predicting dominant HAB species. In western coastal Japan, two HAB species, <i>Chattonella marina</i> complex (hereafter <i>Chattonella</i>) and <i>Karenia mikimotoi</i>, appear in summer, but one species typically dominates, suggesting that one species may potentially suppress the growth of the other. To elucidate the developmental mechanisms of mono-specific blooms of <i>Chattonella</i> and <i>K. mikimotoi</i>, we investigated growth interactions between the two species using bi-algal cultures. Bi-algal cultures with nine combinations of initial cell densities showed that <i>Chattonella</i> significantly inhibited the growth of <i>K. mikimotoi</i>. These interactions were quantitatively analyzed using the Lotka–Volterra competition equation, which showed that both species exhibited a competitive effect on the other, but <i>Chattonella</i> exerted a stronger effect on <i>K. mikimotoi</i>. However, culture filtrates containing extracellular substances of one species did not affect the growth of the other, and no growth inhibition was observed when the two species were cultured together under non-contact conditions. In addition, bi-algal cultures using one of the two <i>Chattonella</i> strains exhibiting different degrees of superoxide (·O<sub>2</sub><sup>−</sup>) production and <i>K. mikimotoi</i> demonstrated that, irrespective of ·O<sub>2</sub><sup>−</sup> levels generated by <i>Chattonella</i>, the growth of <i>K. mikimotoi</i> declined similarly. These results indicate that direct contact with <i>Chattonella</i> cells, rather than extracellular allelopathic substances or ·O<sub>2</sub><sup>−</sup> production, is central to cause the inhibition in <i>K. mikimotoi</i>.</p></div>","PeriodicalId":8262,"journal":{"name":"Aquatic Ecology","volume":"60 1","pages":""},"PeriodicalIF":1.8,"publicationDate":"2025-12-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145778647","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The primary objective of this study was to develop a scientific framework for analyzing catch patterns and determining the most suitable fishing quotas for tuna and tuna-like species in southern Iranian waters. Given the ecological and economic importance of these species, an effective assessment approach is essential for sustainable fisheries management. A 26-year dataset (1997–2022) on tuna and tuna-like catches from the Persian Gulf and the Sea of Oman was analyzed using the Transparent Analytical Framework (TAF) within the R programming environment. Time series forecasting models—specifically, ARIMA and Extreme Learning Machine (ELM) neural networks—were applied to predict future catch trends. Model performance was evaluated using statistical metrics including Mean Absolute Error (MAE) and Root Mean Square Error (RMSE). The results revealed a statistically significant increasing trend in total catch over the study period (significance level 0.9, P < 0.05). Among the species assessed, Yellowfin Tuna (YFT) and Longtail Tuna (LOT) were identified as overexploited and full exploited with high and medium depletion rates (“red” and “yellow” status), while Skipjack Tuna (SKJ), Kawakawa (KAW), Frigate Tuna (FRI), Narrow-barred Spanish Mackerel (COM), and Indo-Pacific Spanish Mackerel (GUT) showed low depletion rates and were categorized as underutilized (“green” status). The ARIMA (0,1,0) model outperformed the ELM model (MAE = 1.6 vs. 22; RMSE = 1.7 vs. 23), indicating its superior predictive accuracy. Current exploitation levels for YFT and LOT exceed sustainable thresholds, necessitating urgent reductions in fishing effort. In contrast, other species remain underexploited, offering potential for increased but controlled harvesting. The application of time-series modeling, particularly ARIMA, provides a robust tool for forecasting stock dynamics and supporting data-driven fisheries management in the region. These findings contribute to improved conservation strategies and policy-making for sustainable utilization of marine resources in the Persian Gulf and the Sea of Oman.
这项研究的主要目标是制定一个科学框架,以分析伊朗南部水域金枪鱼和类金枪鱼品种的捕捞模式和确定最合适的捕捞配额。鉴于这些物种的生态和经济重要性,有效的评估方法对于可持续渔业管理至关重要。使用R编程环境中的透明分析框架(TAF)分析了来自波斯湾和阿曼海的金枪鱼和类金枪鱼捕捞的26年数据集(1997-2022)。时间序列预测模型——特别是ARIMA和极限学习机(ELM)神经网络——被用于预测未来的捕捞趋势。采用平均绝对误差(MAE)和均方根误差(RMSE)等统计指标评估模型性能。结果显示,在研究期间,总捕获量有统计学上显著的增加趋势(显著性水平为0.9,P < 0.05)。其中,黄鳍金枪鱼(YFT)和长尾金枪鱼(LOT)被确定为过度开发和充分开发,具有高和中等耗竭率(“红色”和“黄色”状态),而鲣鱼(SKJ)、川川金枪鱼(KAW)、护卫舰金枪鱼(FRI)、窄条纹西班牙鲭鱼(COM)和印度-太平洋西班牙鲭鱼(GUT)的耗竭率较低,被归类为未充分利用(“绿色”状态)。ARIMA(0,1,0)模型优于ELM模型(MAE = 1.6 vs. 22; RMSE = 1.7 vs. 23),表明其具有更高的预测精度。目前YFT和LOT的开发水平超过了可持续的阈值,需要紧急减少捕捞量。相比之下,其他物种仍未得到充分开发,这为增加但有控制的采伐提供了潜力。时间序列模型,特别是ARIMA的应用,为预测种群动态和支持该区域数据驱动的渔业管理提供了一个强有力的工具。这些发现有助于改善波斯湾和阿曼海海洋资源可持续利用的养护战略和决策。
{"title":"Evaluating tuna stock sustainability in Iranian waters using data-limited methods","authors":"Seyed Ahmadreza Hashemi, Rishi Sharma, Mastooreh Doustdar, Somayeh Mollaee, Rahimeh Rahmati, Sachinandan Dutta","doi":"10.1007/s10452-025-10243-5","DOIUrl":"10.1007/s10452-025-10243-5","url":null,"abstract":"<div><p>The primary objective of this study was to develop a scientific framework for analyzing catch patterns and determining the most suitable fishing quotas for tuna and tuna-like species in southern Iranian waters. Given the ecological and economic importance of these species, an effective assessment approach is essential for sustainable fisheries management. A 26-year dataset (1997–2022) on tuna and tuna-like catches from the Persian Gulf and the Sea of Oman was analyzed using the Transparent Analytical Framework (TAF) within the R programming environment. Time series forecasting models—specifically, ARIMA and Extreme Learning Machine (ELM) neural networks—were applied to predict future catch trends. Model performance was evaluated using statistical metrics including Mean Absolute Error (MAE) and Root Mean Square Error (RMSE). The results revealed a statistically significant increasing trend in total catch over the study period (significance level 0.9, <i>P</i> < 0.05). Among the species assessed, Yellowfin Tuna (YFT) and Longtail Tuna (LOT) were identified as overexploited and full exploited with high and medium depletion rates (“red” and “yellow” status), while Skipjack Tuna (SKJ), Kawakawa (KAW), Frigate Tuna (FRI), Narrow-barred Spanish Mackerel (COM), and Indo-Pacific Spanish Mackerel (GUT) showed low depletion rates and were categorized as underutilized (“green” status). The ARIMA (0,1,0) model outperformed the ELM model (MAE = 1.6 vs. 22; RMSE = 1.7 vs. 23), indicating its superior predictive accuracy. Current exploitation levels for YFT and LOT exceed sustainable thresholds, necessitating urgent reductions in fishing effort. In contrast, other species remain underexploited, offering potential for increased but controlled harvesting. The application of time-series modeling, particularly ARIMA, provides a robust tool for forecasting stock dynamics and supporting data-driven fisheries management in the region. These findings contribute to improved conservation strategies and policy-making for sustainable utilization of marine resources in the Persian Gulf and the Sea of Oman.</p></div>","PeriodicalId":8262,"journal":{"name":"Aquatic Ecology","volume":"60 1","pages":""},"PeriodicalIF":1.8,"publicationDate":"2025-12-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145729606","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-06DOI: 10.1007/s10452-025-10246-2
Xiaoguang Zhang, Yueming Qu, Qinghua Cai, Lin Ye
Understanding how phytoplankton diversity changes over time and the driving mechanisms behind these changes is crucial for the development of freshwater ecosystem conservation policies. However, few studies have simultaneously explored the temporal patterns of lake phytoplankton diversity in three dimensions: taxonomy, function, and phylogeny. Using 20 years (January 1997–December 2016) of plankton monitoring data from Lake Kasumigaura, a temperate lake in Japan, we explored the correlations and ecological drivers between multidimensional temporal beta diversity of lake phytoplankton and their components (i.e., turnover and nestedness). Different dimensions of temporal beta diversity and their components were weakly correlated, suggesting that they provide complementary ecological information. Although temporal beta diversity was found to be primarily driven by stochastic processes, it is worth noting that biotic interactions play a more important role in deterministic processes compared to local environmental and climatic factors. Temporal functional and phylogenetic beta diversity showed a stronger response to deterministic processes compared to temporal taxonomic beta diversity. Our study emphasizes the need for integrated multidimensional biodiversity studies and calls for the incorporation of biological factors in studies of biodiversity drivers.
{"title":"Ecological drivers of multidimensional temporal beta diversity of phytoplankton communities in a temperate lake over 20 years","authors":"Xiaoguang Zhang, Yueming Qu, Qinghua Cai, Lin Ye","doi":"10.1007/s10452-025-10246-2","DOIUrl":"10.1007/s10452-025-10246-2","url":null,"abstract":"<div><p>Understanding how phytoplankton diversity changes over time and the driving mechanisms behind these changes is crucial for the development of freshwater ecosystem conservation policies. However, few studies have simultaneously explored the temporal patterns of lake phytoplankton diversity in three dimensions: taxonomy, function, and phylogeny. Using 20 years (January 1997–December 2016) of plankton monitoring data from Lake Kasumigaura, a temperate lake in Japan, we explored the correlations and ecological drivers between multidimensional temporal beta diversity of lake phytoplankton and their components (i.e., turnover and nestedness). Different dimensions of temporal beta diversity and their components were weakly correlated, suggesting that they provide complementary ecological information. Although temporal beta diversity was found to be primarily driven by stochastic processes, it is worth noting that biotic interactions play a more important role in deterministic processes compared to local environmental and climatic factors. Temporal functional and phylogenetic beta diversity showed a stronger response to deterministic processes compared to temporal taxonomic beta diversity. Our study emphasizes the need for integrated multidimensional biodiversity studies and calls for the incorporation of biological factors in studies of biodiversity drivers.</p></div>","PeriodicalId":8262,"journal":{"name":"Aquatic Ecology","volume":"60 1","pages":""},"PeriodicalIF":1.8,"publicationDate":"2025-12-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145730058","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-11-15DOI: 10.1007/s10452-025-10242-6
Du Luo, Dingtian Yang, Yuefei Li, Jie Li
The Pearl River Delta (PRD) has experienced substantial environmental changes due to anthropogenic activities, with biological invasion emerging as a major consequence. However, our understanding of nonnative fish species and their adaptability to the estuarine environment remains limited. To address this gap, we focused on salinity as a key factor, conducting a literature survey to identify nonnative fish species and assess their salinity tolerance. We then analyzed spatial variations in alpha diversity and trophic levels across sampling sites. Additionally, we simulated salinity distributions during saltwater intrusion to evaluate potential adaptive areas for nonnative fish in the PRD. Our findings identified 25 nonnative fish species, phylogenetically belonging to nine orders, with three being translocated species within China and the remaining 22 being exotic introductions. Although most of the nonnative fish are freshwater species and exhibit species-specific differences in salinity tolerance, they generally can adapt to brackish water, with an average salinity tolerance of 23.7 ppt. The proportion of nonnative fish species richness decreased as distance from the head of the PRD to the estuary mouth declined (p = 0.02). Spatial analysis unveiled pronounced heterogeneity in salinity distribution, particularly in the east PRE of the LingDing Bay. Notably, under salinity intrusion circumstances, a gap region between salinity levels of 5.0 ppt and 15.0 ppt, spanning 3111.2 km2, emerged as a potential adaptation zone for nonnative fish. By emphasizing salinity as a key factor, our study may contribute to elucidating invasion mechanisms and enhancing the assessment of invasion risks in estuarine environments.
{"title":"Nonnative fish in the Pearl River Delta: a comprehensive analysis of salinity tolerance and potential adaptive habitat distribution in brackish waters","authors":"Du Luo, Dingtian Yang, Yuefei Li, Jie Li","doi":"10.1007/s10452-025-10242-6","DOIUrl":"10.1007/s10452-025-10242-6","url":null,"abstract":"<div><p>The Pearl River Delta (PRD) has experienced substantial environmental changes due to anthropogenic activities, with biological invasion emerging as a major consequence. However, our understanding of nonnative fish species and their adaptability to the estuarine environment remains limited. To address this gap, we focused on salinity as a key factor, conducting a literature survey to identify nonnative fish species and assess their salinity tolerance. We then analyzed spatial variations in alpha diversity and trophic levels across sampling sites. Additionally, we simulated salinity distributions during saltwater intrusion to evaluate potential adaptive areas for nonnative fish in the PRD. Our findings identified 25 nonnative fish species, phylogenetically belonging to nine orders, with three being translocated species within China and the remaining 22 being exotic introductions. Although most of the nonnative fish are freshwater species and exhibit species-specific differences in salinity tolerance, they generally can adapt to brackish water, with an average salinity tolerance of 23.7 ppt. The proportion of nonnative fish species richness decreased as distance from the head of the PRD to the estuary mouth declined (<i>p</i> = 0.02). Spatial analysis unveiled pronounced heterogeneity in salinity distribution, particularly in the east PRE of the LingDing Bay. Notably, under salinity intrusion circumstances, a gap region between salinity levels of 5.0 ppt and 15.0 ppt, spanning 3111.2 km<sup>2</sup>, emerged as a potential adaptation zone for nonnative fish. By emphasizing salinity as a key factor, our study may contribute to elucidating invasion mechanisms and enhancing the assessment of invasion risks in estuarine environments.</p></div>","PeriodicalId":8262,"journal":{"name":"Aquatic Ecology","volume":"60 1","pages":""},"PeriodicalIF":1.8,"publicationDate":"2025-11-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145510970","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-11-14DOI: 10.1007/s10452-025-10244-4
A. L. Bryukhanov, A. A. Soldatov, Yu. V. Bogdanovich, I. V. Golovina, N. E. Shalagina, D. N. Akhaev, A. S. Osipova
<div><p>The phylogenetic composition of the microbiome from the respiratory surfaces of the bivalve mollusk <i>Anadara kagoshimensis</i> (Tokunaga 1906) was studied for the first time with the use of high-throughput sequencing of 16S rRNA gene. The study revealed significant and rapid (within two days) alterations in the qualitative and quantitative composition of the microbial community. These alterations were influenced by the dissolved oxygen content and the presence of hydrogen sulfide in the environment. Furthermore, the observed alterations impacted metabolic pathways within <i>A. kagoshimensis</i> tissues. Under normoxic conditions (6.9–8.2 mg O<sub>2</sub> l<sup>−1</sup>), the microbiome from the respiratory surfaces of ark shell was predominantly (85% of all 16S rRNA gene reads) composed of microorganisms belonging to the genus <i>Stenotrophomonas</i> (family <i>Xanthomonadaceae</i>), aerobic, catalase-positive, motile hydrolytic bacteria that actively consume oxygen. However, under normoxic conditions, the metabolism of ark shell gills was found to be anaerobic. This was evidenced by the highest lactate dehydrogenase (LDH) activity in relation to other tissues (foot, hepatopancreas), high lactate and low glucose content in this tissue. Under conditions of acute hypoxia (0.22–0.50 mg O<sub>2</sub> l<sup>−1</sup>), the microbiome from the respiratory surfaces of <i>A. kagoshimensis</i> was found to be dominated by facultatively anaerobic microflora, predominantly consisting of bacteria from the genera <i>Vibrio</i> and <i>Listonella</i>. The main type of metabolism of these bacteria under anaerobic conditions is fermentation processes with the formation of various organic acid derivatives. Under conditions of acute hypoxia, glucose-lactate metabolism in <i>A. kagoshimensis</i> tissues was inhibited. The decrease in LDH and malate dehydrogenase (MDH) activities without any alteration in the content of pyruvate, lactate and glucose in the tissues when compared to the control group provides evidence for this. Hypoxia has been observed to induce an increase in succinate dehydrogenase (SDH) activity in all tissues, which may be explained by a decrease in the content of the SDH inhibitor, oxaloacetate. Exposure to hydrogen sulfide (6 mg S<sup>2</sup>⁻ l<sup>−1</sup>; 0.10–0.50 mg O<sub>2</sub> l<sup>−1</sup>) resulted in the predominance of microaerophilic sulfide-oxidizing microorganisms in the respiratory tissues microbiome, consisting mainly of bacteria belonging to the family <i>Arcobacteraceae</i> (genera <i>Pseudarcobacter</i>, <i>Halarcobacter</i> and <i>Arcobacter</i>). The glucose-lactate pathway of mollusk metabolism was completely suppressed under these conditions. The activity of SDH in the gills of <i>A. kagoshimensis</i> exposed to hydrogen sulfide did not change significantly in comparison with the control group. This finding suggests the protective role of microorganisms capable of oxidizing reduced sulfate compounds. Consequent
{"title":"Microbial community of respiratory surfaces and features of tissue energy metabolism in the Black Sea bivalve mollusk Anadara kagoshimensis (Tokunaga, 1906) under conditions of acute hypoxia and hydrogen sulfide contamination","authors":"A. L. Bryukhanov, A. A. Soldatov, Yu. V. Bogdanovich, I. V. Golovina, N. E. Shalagina, D. N. Akhaev, A. S. Osipova","doi":"10.1007/s10452-025-10244-4","DOIUrl":"10.1007/s10452-025-10244-4","url":null,"abstract":"<div><p>The phylogenetic composition of the microbiome from the respiratory surfaces of the bivalve mollusk <i>Anadara kagoshimensis</i> (Tokunaga 1906) was studied for the first time with the use of high-throughput sequencing of 16S rRNA gene. The study revealed significant and rapid (within two days) alterations in the qualitative and quantitative composition of the microbial community. These alterations were influenced by the dissolved oxygen content and the presence of hydrogen sulfide in the environment. Furthermore, the observed alterations impacted metabolic pathways within <i>A. kagoshimensis</i> tissues. Under normoxic conditions (6.9–8.2 mg O<sub>2</sub> l<sup>−1</sup>), the microbiome from the respiratory surfaces of ark shell was predominantly (85% of all 16S rRNA gene reads) composed of microorganisms belonging to the genus <i>Stenotrophomonas</i> (family <i>Xanthomonadaceae</i>), aerobic, catalase-positive, motile hydrolytic bacteria that actively consume oxygen. However, under normoxic conditions, the metabolism of ark shell gills was found to be anaerobic. This was evidenced by the highest lactate dehydrogenase (LDH) activity in relation to other tissues (foot, hepatopancreas), high lactate and low glucose content in this tissue. Under conditions of acute hypoxia (0.22–0.50 mg O<sub>2</sub> l<sup>−1</sup>), the microbiome from the respiratory surfaces of <i>A. kagoshimensis</i> was found to be dominated by facultatively anaerobic microflora, predominantly consisting of bacteria from the genera <i>Vibrio</i> and <i>Listonella</i>. The main type of metabolism of these bacteria under anaerobic conditions is fermentation processes with the formation of various organic acid derivatives. Under conditions of acute hypoxia, glucose-lactate metabolism in <i>A. kagoshimensis</i> tissues was inhibited. The decrease in LDH and malate dehydrogenase (MDH) activities without any alteration in the content of pyruvate, lactate and glucose in the tissues when compared to the control group provides evidence for this. Hypoxia has been observed to induce an increase in succinate dehydrogenase (SDH) activity in all tissues, which may be explained by a decrease in the content of the SDH inhibitor, oxaloacetate. Exposure to hydrogen sulfide (6 mg S<sup>2</sup>⁻ l<sup>−1</sup>; 0.10–0.50 mg O<sub>2</sub> l<sup>−1</sup>) resulted in the predominance of microaerophilic sulfide-oxidizing microorganisms in the respiratory tissues microbiome, consisting mainly of bacteria belonging to the family <i>Arcobacteraceae</i> (genera <i>Pseudarcobacter</i>, <i>Halarcobacter</i> and <i>Arcobacter</i>). The glucose-lactate pathway of mollusk metabolism was completely suppressed under these conditions. The activity of SDH in the gills of <i>A. kagoshimensis</i> exposed to hydrogen sulfide did not change significantly in comparison with the control group. This finding suggests the protective role of microorganisms capable of oxidizing reduced sulfate compounds. Consequent","PeriodicalId":8262,"journal":{"name":"Aquatic Ecology","volume":"60 1","pages":""},"PeriodicalIF":1.8,"publicationDate":"2025-11-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145510678","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-11-12DOI: 10.1007/s10452-025-10245-3
Mainavi Patel, Hardi Patel, Nayan Borsadiya, Gayatri Dave
Offshore and onshore activities introduce significant amounts of organic carbon into coastal waters, elevating CO2 levels through microbial decomposition and contributing to ocean acidification. This process reduces the availability of dissolved silica, a key nutrient essential for diatom growth. As primary producers, diatoms link carbon and silica cycles and serve as sensitive bioindicators of aquatic health. A preliminary assessment of the coastal zones of the Cambay Basin identified two distinct areas: a highly economically active zone (Alang and Ghogha) with elevated chemical oxygen demand (COD) and variable Silicon (Si) levels, and another zone where COD remains within permissible limits with low Silicon (Khambhat). The influence of these differing environmental conditions on the structure of diatom assemblages was examined. Results revealed a shift towards opportunistic and pollution-tolerant diatom taxa, alongside a decline in more sensitive species, indicating ecological disturbance. Sentinel species like Entomoneis alata, Halamphora coffeaeformis, Chaetoceros gracilis, Iconella sp., and Surirella librile thrived under high COD, suggesting their potential as indicators of organic pollution. These findings underscore the value of diatom assemblages in monitoring the ecological impact of industrial and shipping activities and support the development of diatom-based indices for assessing coastal water quality.
{"title":"Short-term assessment of diatom assemblages under high chemical oxygen demand and low silicon in a shipping zone of the Gulf of Khambhat, Gujarat, India","authors":"Mainavi Patel, Hardi Patel, Nayan Borsadiya, Gayatri Dave","doi":"10.1007/s10452-025-10245-3","DOIUrl":"10.1007/s10452-025-10245-3","url":null,"abstract":"<div><p>Offshore and onshore activities introduce significant amounts of organic carbon into coastal waters, elevating CO<sub>2</sub> levels through microbial decomposition and contributing to ocean acidification. This process reduces the availability of dissolved silica, a key nutrient essential for diatom growth. As primary producers, diatoms link carbon and silica cycles and serve as sensitive bioindicators of aquatic health. A preliminary assessment of the coastal zones of the Cambay Basin identified two distinct areas: a highly economically active zone (Alang and Ghogha) with elevated chemical oxygen demand (COD) and variable Silicon (Si) levels, and another zone where COD remains within permissible limits with low Silicon (Khambhat). The influence of these differing environmental conditions on the structure of diatom assemblages was examined. Results revealed a shift towards opportunistic and pollution-tolerant diatom taxa, alongside a decline in more sensitive species, indicating ecological disturbance. Sentinel species like <i>Entomoneis alata, Halamphora coffeaeformis, Chaetoceros gracilis, Iconella sp.,</i> and <i>Surirella librile</i> thrived under high COD, suggesting their potential as indicators of organic pollution. These findings underscore the value of diatom assemblages in monitoring the ecological impact of industrial and shipping activities and support the development of diatom-based indices for assessing coastal water quality.</p></div>","PeriodicalId":8262,"journal":{"name":"Aquatic Ecology","volume":"60 1","pages":""},"PeriodicalIF":1.8,"publicationDate":"2025-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145493475","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-22DOI: 10.1007/s10452-025-10240-8
Gilberto Nepomuceno Salvador, Naraiana Loureiro Benone, Paulo Santos Pompeu, Paulo Sérgio Formagio, Rosalva Sulzbacher, Carlos Bernardo Mascarenhas Alves
The distribution of the species is influenced by many factors, like biogeographic patterns, riverscape, and local features. Despite being well studied since the publication of the River Continuum Concept, different local characteristics are important in determining fish distribution along the longitudinal gradient in the Neotropical region. Here, we tested how local characteristics can affect fishes in the Upper Paraná River basin. To perform such analyses, we measured metrics related to canopy, hydraulic, fish shelter, and others, using adapted EPA protocol in 40 streams located in Upper Paraná basin. After using an exclusion metric method (e.g., collinearity, low variance, and high proportion of zeros), we used GLM (quasi-Poisson; link Log) to identify the best metrics to respond to fish richness and abundance. We recorded 44 fish species, including 3 non-native species, with the first record of Gymnotus cf. pantanal for the Rio Grande. Our results indicate that fish richness increases in streams with high proportion of roots and decreases in streams with a high proportion of Leaf banks and Riparian mid-layer cover. Shannon index decreases in streams with high proportion of mid-layer vegetation cover and abundance decreases in stream with high proportion of riparian canopy cover and high proportion of sand. Pielou index decreases in streams with a high proportion of fine substrate and wetted width.
{"title":"How do local variables impact fish in the Upper Paraná River basin?","authors":"Gilberto Nepomuceno Salvador, Naraiana Loureiro Benone, Paulo Santos Pompeu, Paulo Sérgio Formagio, Rosalva Sulzbacher, Carlos Bernardo Mascarenhas Alves","doi":"10.1007/s10452-025-10240-8","DOIUrl":"10.1007/s10452-025-10240-8","url":null,"abstract":"<div><p>The distribution of the species is influenced by many factors, like biogeographic patterns, riverscape, and local features. Despite being well studied since the publication of the River Continuum Concept, different local characteristics are important in determining fish distribution along the longitudinal gradient in the Neotropical region. Here, we tested how local characteristics can affect fishes in the Upper Paraná River basin. To perform such analyses, we measured metrics related to canopy, hydraulic, fish shelter, and others, using adapted EPA protocol in 40 streams located in Upper Paraná basin. After using an exclusion metric method (e.g., collinearity, low variance, and high proportion of zeros), we used GLM (<i>quasi-Poisson</i>; link Log) to identify the best metrics to respond to fish richness and abundance. We recorded 44 fish species, including 3 non-native species, with the first record of <i>Gymnotus</i> cf. <i>pantanal</i> for the Rio Grande. Our results indicate that fish richness increases in streams with high proportion of roots and decreases in streams with a high proportion of Leaf banks and Riparian mid-layer cover. Shannon index decreases in streams with high proportion of mid-layer vegetation cover and abundance decreases in stream with high proportion of riparian canopy cover and high proportion of sand. Pielou index decreases in streams with a high proportion of fine substrate and wetted width.</p></div>","PeriodicalId":8262,"journal":{"name":"Aquatic Ecology","volume":"59 4","pages":"1537 - 1547"},"PeriodicalIF":1.8,"publicationDate":"2025-10-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145405908","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-15DOI: 10.1007/s10452-025-10239-1
Zhijie Liu, Hao Liu, Chao Wang, Liqing Li
The river-reservoir continuum is a key area for important water sources and receiving water bodies. Dissolved organic matter (DOM) is an important factor affecting the water quality and aquatic ecological health in the continuum. However, there is currently a lack of research and quantification of the contributions of abiotic and biotic factors to DOM in the continuum during algal proliferation. In this study, single-turnover active chlorophyll fluorescence (LabSTAF) was used to obtain the photosynthetic characteristics of algae. At the same time, the sources of DOM were analyzed by combining three-dimensional fluorescence spectra with parallel factor analysis, and various statistical methods were used to deeply explore the impact mechanisms of abiotic and biotic factors on DOM. The results show that water temperature (WT), pH, and DO drive algal growth in the inflow river. The algal density in the estuary area did not increase significantly, but it has a high production potential; algae proliferated significantly in the backwater area, but their photosynthetic activity was inhibited by WT. Algal proliferation increased the DOC concentration in the inflow river. The river is dominated by humic-like components (C1+C2), followed by protein-like components (C3+C4); the fluorescence concentration of DOM shows a decreasing trend from the estuary to the backwater area. Algal proliferation significantly changed the sources of DOM in the river, with strong endogenous characteristics in the later stage of proliferation. The results of mixed-effect models and partial least squares structural equation modeling show that biotic and environmental factors together explain 73%, 76%, 49%, and 41% of the variations in C1, C2, C3, and C4, respectively. In addition, the photochemical flux per unit volume (JVPII) is a key factor for algae to indirectly drive DOM changes through photosynthetic activity. This study is of great significance for a deeper understanding of the biogeochemical cycling of DOM in the river-reservoir area.
{"title":"Algal proliferation in inflow rivers of large reservoirs and its influence on dissolved organic matter","authors":"Zhijie Liu, Hao Liu, Chao Wang, Liqing Li","doi":"10.1007/s10452-025-10239-1","DOIUrl":"10.1007/s10452-025-10239-1","url":null,"abstract":"<div><p>The river-reservoir continuum is a key area for important water sources and receiving water bodies. Dissolved organic matter (DOM) is an important factor affecting the water quality and aquatic ecological health in the continuum. However, there is currently a lack of research and quantification of the contributions of abiotic and biotic factors to DOM in the continuum during algal proliferation. In this study, single-turnover active chlorophyll fluorescence (LabSTAF) was used to obtain the photosynthetic characteristics of algae. At the same time, the sources of DOM were analyzed by combining three-dimensional fluorescence spectra with parallel factor analysis, and various statistical methods were used to deeply explore the impact mechanisms of abiotic and biotic factors on DOM. The results show that water temperature (WT), pH, and DO drive algal growth in the inflow river. The algal density in the estuary area did not increase significantly, but it has a high production potential; algae proliferated significantly in the backwater area, but their photosynthetic activity was inhibited by WT. Algal proliferation increased the DOC concentration in the inflow river. The river is dominated by humic-like components (C1+C2), followed by protein-like components (C3+C4); the fluorescence concentration of DOM shows a decreasing trend from the estuary to the backwater area. Algal proliferation significantly changed the sources of DOM in the river, with strong endogenous characteristics in the later stage of proliferation. The results of mixed-effect models and partial least squares structural equation modeling show that biotic and environmental factors together explain 73%, 76%, 49%, and 41% of the variations in C1, C2, C3, and C4, respectively. In addition, the photochemical flux per unit volume (JV<sub>PII</sub>) is a key factor for algae to indirectly drive DOM changes through photosynthetic activity. This study is of great significance for a deeper understanding of the biogeochemical cycling of DOM in the river-reservoir area.</p></div>","PeriodicalId":8262,"journal":{"name":"Aquatic Ecology","volume":"59 4","pages":"1517 - 1536"},"PeriodicalIF":1.8,"publicationDate":"2025-10-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145405899","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-12DOI: 10.1007/s10452-025-10238-2
Yeji Son, Hyo Keun Jang, Kwanwoo Kim, Myung Joon Kim, Sanghoon Park, Yejin Kim, Jaesoon Kim, Yoon Ji Lee, Huitae Joo, Seok-Hyun Youn, Sang Heon Lee
Recent studies have documented rapid environmental changes impacting biological communities, such as shifts in phytoplankton composition and size distribution, with significant implications for the nutritional quality of the marine food web. Phytoplankton-derived macromolecules, including carbohydrates (CHO), proteins (PRT), and lipids (LIP), are crucial components of marine ecosystems; however, considerable knowledge gaps remain regarding their spatiotemporal variability and ecological consequences. This study investigates seasonal and regional variations in the macromolecular composition and calorie content of particulate organic matter (POM) across the Korean Peninsula's seas, aiming to identify primary environmental factors driving these variations. Our findings highlight significant variations in POM macromolecular compositions, with CHO and LIP generally dominating over PRT across most regions and seasons, influenced by environmental factors such as temperature, nutrient concentrations, and salinity. Food material (FM), defined as the total sum of CHO, PRT, and LIP, varied significantly among regions, with the Yellow Sea exhibiting notably higher FM, reflecting elevated nutrient concentrations and productivity compared to other regions. Despite broad ranges, both FM and calorie content were, on average, were approximately 40% lower compared to values reported in a previous study. Principal component analysis and multiple linear regression analysis identified similar environmental factors influencing both FM and calorie content, highlighting the importance of regional environmental conditions. This study enhances our understanding of phytoplankton biochemical dynamics in the Korean seas and emphasizes the need for future research on size-specific FM and calorie content to better predict ecosystem responses to ongoing environmental change.
{"title":"Environmental drivers of food material and calorie content variability of particulate organic matter in four distinct Korean Peninsula Seas","authors":"Yeji Son, Hyo Keun Jang, Kwanwoo Kim, Myung Joon Kim, Sanghoon Park, Yejin Kim, Jaesoon Kim, Yoon Ji Lee, Huitae Joo, Seok-Hyun Youn, Sang Heon Lee","doi":"10.1007/s10452-025-10238-2","DOIUrl":"10.1007/s10452-025-10238-2","url":null,"abstract":"<div><p>Recent studies have documented rapid environmental changes impacting biological communities, such as shifts in phytoplankton composition and size distribution, with significant implications for the nutritional quality of the marine food web. Phytoplankton-derived macromolecules, including carbohydrates (CHO), proteins (PRT), and lipids (LIP), are crucial components of marine ecosystems; however, considerable knowledge gaps remain regarding their spatiotemporal variability and ecological consequences. This study investigates seasonal and regional variations in the macromolecular composition and calorie content of particulate organic matter (POM) across the Korean Peninsula's seas, aiming to identify primary environmental factors driving these variations. Our findings highlight significant variations in POM macromolecular compositions, with CHO and LIP generally dominating over PRT across most regions and seasons, influenced by environmental factors such as temperature, nutrient concentrations, and salinity. Food material (FM), defined as the total sum of CHO, PRT, and LIP, varied significantly among regions, with the Yellow Sea exhibiting notably higher FM, reflecting elevated nutrient concentrations and productivity compared to other regions. Despite broad ranges, both FM and calorie content were, on average, were approximately 40% lower compared to values reported in a previous study. Principal component analysis and multiple linear regression analysis identified similar environmental factors influencing both FM and calorie content, highlighting the importance of regional environmental conditions. This study enhances our understanding of phytoplankton biochemical dynamics in the Korean seas and emphasizes the need for future research on size-specific FM and calorie content to better predict ecosystem responses to ongoing environmental change.</p></div>","PeriodicalId":8262,"journal":{"name":"Aquatic Ecology","volume":"59 4","pages":"1497 - 1516"},"PeriodicalIF":1.8,"publicationDate":"2025-10-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145405593","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}