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Machine Learning-based Analysis of UF-5000 Scattergrams Improves the Identification of Urinary Dysmorphic Red Blood Cells. 基于机器学习的UF-5000散点图分析提高了尿液畸形红细胞的识别。
IF 4.9 2区 医学 Q1 MEDICAL LABORATORY TECHNOLOGY Pub Date : 2025-11-05 DOI: 10.3343/alm.2025.0227
Yoshifumi Morita,Teruhiko Yoshida,Rin Yokoyama,Naru Nakatsuka,Takashi Hisasue,Masami Tanaka,Yoshikazu Ono,Kenichi Shukuya,Makoto Kurano
BackgroundIdentifying dysmorphic red blood cells (RBCs) is critical for diagnosing glomerular diseases, as distinguishing glomerular from non-glomerular hematuria may reduce reliance on invasive diagnostics such as kidney biopsy. We aimed to enhance urinary RBC morphological classification by employing machine learning (ML) to analyze UF-5000 scattergram data.MethodsRBCs in urine samples (N=185) were classified as dysmorphic or isomorphic based on microscopic findings. UF-5000 scattergrams were quantified to generate 20 statistical features and used to train a ML model in DataRobot (v9.1) with an automated pipeline, five-fold cross-validation, and LogLoss-based selection. Performance was evaluated in an independent cohort (N=1,093). Accuracy was defined as concordance with microscopy findings. Areas under ROC curves (AUROCs) and diagnostic metrics are reported with 95% confidence intervals (CIs).ResultsAmong conventional UF-5000 parameters, the small RBC/total RBC ratio was the strongest predictor (AUROC 0.97, 95% CI 0.94-0.99). Scattergram-derived features indicated that RBC size-related parameters were crucial for identifying dysmorphic RBCs. The ML model alone demonstrated superior accuracy over UF-5000 RBC-Info alone (concordance 95.2% vs. 92.1%; AUROC 0.95 [0.94-0.97] vs. 0.92 [0.91-0.94]). Logical (OR/AND) combinations of the ML model with RBC-Info outperformed RBC-Info alone (OR: concordance 92.7%, AUROC 0.93 [0.92-0.95]; AND: concordance 94.6%, AUROC 0.94 [0.93-0.96]).ConclusionsA scattergram-based ML model improves the accuracy and reliability of urinary RBC morphological classification based on UF-5000 scattergrams and may help reduce reliance on invasive diagnostics. Prospective, multicenter studies should validate generalizability and assess integration into routine workflows.
鉴别畸形红细胞(rbc)对于诊断肾小球疾病至关重要,因为区分肾小球性血尿和非肾小球性血尿可以减少对侵入性诊断(如肾活检)的依赖。我们的目的是通过机器学习(ML)来分析UF-5000散点图数据来增强尿液红细胞形态分类。方法对185例尿样进行显微检查,将其分为异型和异型两类。对f -5000散点图进行量化,生成20个统计特征,并使用自动管道、五倍交叉验证和基于loglos的选择在datarrobot (v9.1)中训练ML模型。在一个独立队列(N= 1093)中评估疗效。准确性定义为与显微镜检查结果一致。ROC曲线下面积(auroc)和诊断指标以95%置信区间(ci)报告。结果在常规的UF-5000参数中,小红细胞/总红细胞比是最强的预测因子(AUROC 0.97, 95% CI 0.94-0.99)。散点图衍生的特征表明,红细胞大小相关参数是识别畸形红细胞的关键。单独ML模型比单独使用UF-5000 RBC-Info显示出更高的准确性(一致性95.2% vs. 92.1%; AUROC 0.95 [0.94-0.97] vs. 0.92[0.91-0.94])。ML模型与RBC-Info的逻辑(OR/AND)组合优于单独使用RBC-Info (OR:一致性92.7%,AUROC 0.93 [0.92-0.95]; AND:一致性94.6%,AUROC 0.94[0.93-0.96])。结论基于sa散点图的ML模型提高了基于UF-5000散点图的尿液红细胞形态分类的准确性和可靠性,有助于减少对侵入性诊断的依赖。前瞻性的多中心研究应验证其普遍性,并评估其与日常工作流程的整合。
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引用次数: 0
Global Perspectives on Managing Incidental and Secondary Findings in Genomic Testing: A Comprehensive Review of Policies, Implementation Challenges, and Stakeholder Perspectives. 管理基因组检测附带和次要发现的全球视角:政策、实施挑战和利益相关者视角的全面回顾。
IF 4.9 2区 医学 Q1 MEDICAL LABORATORY TECHNOLOGY Pub Date : 2025-11-05 DOI: 10.3343/alm.2025.0134
Jisook Yim,Kyung Sun Park,Eul-Ju Seo
The rapid advancement of genome sequencing has increased the detection of incidental findings (IFs) and secondary findings (SFs), raising complex ethical and practical chal-lenges in both clinical and research settings. This review examines policies, guidelines, and stakeholder perspectives on IF/SF across different jurisdictions, focusing on articles published between 2000 and 2024. We found significant variation in IF/SF reporting prac-tices, reflecting different healthcare systems and ethical frameworks. While the American College of Medical Genetics and Genomics supports proactive SF reporting, European and Canadian policies adopt more conservative approaches. Stakeholder perspectives also varied; patients generally preferred receiving results, whereas healthcare professionals' support depended on factors including actionability and patient age. Particular challenges emerged in relation to pediatric cases, with ongoing debates about balancing future au-tonomy with potential medical benefits. Implementation barriers were identified across ju-risdictions, including resource constraints, knowledge limitations, and a lack of standard-ized procedures. Despite consensus on the potential value of IF/SF reporting, inconsisten-cies in approaches and implementation challenges persist. Current evidence suggests the need for more sophisticated, context-sensitive frameworks that can accommodate differ-ent healthcare systems while maintaining consistent ethical standards. Further research is required to understand the long-term effects of different reporting approaches on patients, healthcare systems, and society.
基因组测序的快速发展增加了偶然发现(if)和次要发现(sf)的检测,在临床和研究环境中提出了复杂的伦理和实践挑战。本综述考察了不同司法管辖区关于IF/SF的政策、指导方针和利益相关者的观点,重点关注2000年至2024年间发表的文章。我们发现IF/SF报告实践存在显著差异,反映了不同的医疗体系和道德框架。虽然美国医学遗传学和基因组学学院支持积极主动的SF报告,但欧洲和加拿大的政策采取了更保守的方法。利益相关者的观点也各不相同;患者普遍倾向于接受结果,而医疗保健专业人员的支持取决于可操作性和患者年龄等因素。与儿科病例相关的特殊挑战出现了,关于如何平衡未来的自主权与潜在的医疗利益的争论正在进行。跨司法管辖区确定了实施障碍,包括资源限制、知识限制和缺乏标准化程序。尽管人们对IF/SF报告的潜在价值达成了共识,但方法和实施方面的挑战仍然不一致。目前的证据表明,需要更复杂的、对环境敏感的框架,以适应不同的医疗保健系统,同时保持一致的道德标准。需要进一步的研究来了解不同的报告方法对患者、医疗保健系统和社会的长期影响。
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引用次数: 0
Can Reference Materials Prepared Following CLSI C37-A Be Utilized Without Commutability Assessment? Perspectives Based on Lipid Measurements. 按照CLSI C37-A标准制备的参考材料可以不进行可交换性评估而使用吗?基于脂质测量的观点。
IF 3.9 2区 医学 Q1 MEDICAL LABORATORY TECHNOLOGY Pub Date : 2025-11-01 Epub Date: 2025-09-03 DOI: 10.3343/alm.2025.0010
Jong Do Seo, Gye Cheol Kwon, Jeong-Ho Kim, Sang-Guk Lee, Junghan Song, Pil-Whan Park, Dongheui An, Qute Choi, Chan-Ik Cho, Sollip Kim, Yeo-Min Yun

Background: Ensuring reference material (RM) commutability is crucial for evaluating measurement traceability in order to standardize laboratory tests. However, commutability assessment is not routinely performed. We assessed whether RMs prepared following CLSI C37-A guidelines could be used without assessing commutability by evaluating their commutability for four lipid measurements using the International Federation of Clinical Chemistry and Laboratory Medicine (IFCC) and CLSI EP14 protocols.

Methods: We analyzed total cholesterol (TC), triglycerides (TGs), high-density lipoprotein cholesterol (HDL-C), and low-density lipoprotein cholesterol (LDL-C) in frozen sera from 20 individuals and 11 RMs, prepared by the Korea Disease Control and Prevention Agency-Laboratory Standardization Project (per CLSI C37-A), using six routine measurement procedures (MPs). Regression equations and 95% prediction intervals derived from single-donor sera were analyzed following CLSI EP14. The IFCC protocol was used to assess differences in inter-MP biases between RM and clinical samples. The effect of the TG concentration on commutability was evaluated by analyzing biases between MP results and reference procedure-assigned values.

Results: RMs were commutable for most MP pairs for TC and TG. Commutability for HDL-C and LDL-C varied across RMs, with RM10 and RM11 showing higher TG levels (2.38 and 2.95 mmol/L, respectively) and lower commutability. Increased bias percentages from assigned values were observed for RMs with higher TG levels.

Conclusions: RMs prepared per CLSI C37-A were commutable with most MP pairs for TC and TG. Elevated TG levels affected HDL-C and LDL-C commutability, highlighting the need to consider TG concentrations during RM preparation and assess commutability to standardize laboratory tests.

背景:为了标准化实验室测试,确保标准物质(RM)的可交换性对于评估测量可追溯性至关重要。然而,可交换性评估并不是例行进行的。我们通过使用国际临床化学和检验医学联合会(IFCC)和CLSI EP14方案评估四种脂质测量的可交换性,评估按照CLSI C37-A指南制备的RMs是否可以在不评估可交换性的情况下使用。方法:采用6种常规测量方法(MPs),对韩国疾病预防控制院实验室标准化项目(CLSI C37-A)制备的20名个体和11名对照者的冷冻血清中总胆固醇(TC)、甘油三酯(tg)、高密度脂蛋白胆固醇(HDL-C)和低密度脂蛋白胆固醇(LDL-C)进行分析。采用CLSI EP14分析单供者血清的回归方程和95%预测区间。IFCC方案用于评估RM和临床样本之间mp间偏倚的差异。TG浓度对可交换性的影响通过分析MP结果与参考程序分配值之间的偏差来评估。结果:TC和TG的大多数MP对均方根是可交换的。HDL-C和LDL-C的可交换性在RM10和RM11中表现出较高的TG水平(分别为2.38和2.95 mmol/L)和较低的可交换性。对于TG水平较高的均方根值,观察到分配值的偏倚百分比增加。结论:CLSI C37-A制备的RMs与大多数MP对的TC和TG可互换。升高的TG水平影响HDL-C和LDL-C的可交换性,强调在RM制备过程中需要考虑TG浓度并评估可交换性以标准化实验室测试。
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引用次数: 0
Erratum: Comparing Genomic Characteristics of Streptococcus pyogenes Associated with Invasiveness over a 20-year Period in Korea. 勘误:比较20年来韩国与侵袭性相关的化脓性链球菌的基因组特征。
IF 3.9 2区 医学 Q1 MEDICAL LABORATORY TECHNOLOGY Pub Date : 2025-11-01 Epub Date: 2025-08-26 DOI: 10.3343/alm.2025.0314
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引用次数: 0
Optimized Protocol for Producing Pathogen-inactivated Double-dose Platelet Concentrates From Six Pooled Buffy Coats. 从六件汇集的 Buffy Coat 中生产病原体灭活的双剂量血小板浓缩物的优化方案。
IF 3.9 2区 医学 Q1 MEDICAL LABORATORY TECHNOLOGY Pub Date : 2025-11-01 Epub Date: 2025-03-21 DOI: 10.3343/alm.2024.0555
Marco Amato, Lisa Seekircher, Lena Tschiderer, Peter Willeit, Harald Schennach, Anita Siller

Background: Pooled platelet (PLT) production methods differ worldwide. In Europe, the buffy coat (BC) method is predominantly used, with four to eight BCs being pooled to produce single- or double-dose PLT products. The European Directorate for the Quality of Medicines & HealthCare (EDQM) blood guide and Austrian legislation define a therapeutic PLT unit as ≥ 2 × 1011 PLTs/unit. We optimized the manufacturing steps to produce double-dose PLT products from six BCs, aiming to enhance production efficiency while maintaining product quality.

Methods: We stepwise optimized our protocol starting from five BCs (BC5) (N=107). First, we included an additional BC (BC6) (N=110). Second, we used a hematology analyzer (Sysmex XN-1000) equipped with blood bank mode, which is a novel software application for measuring PLT counts in PLT units (BC6+XN-1000) (N=106). Third, we optimized the blood cell separator (BCS) settings to produce higher-volume BCs (BC6+XN-1000+BCS) (N=107). Fourth, we adapted the centrifugation (BC6+XN-1000+BCS+CF) (N=197). All units were pathogen-inactivated using the INTERCEPT blood system (amotosalen/ultraviolet A).

Results: Each optimization step significantly increased the yield ( × 1011/PLT concentrate) (P <0.001). The mean yield increased from 2.83 (SD 0.39) for BC5 to 4.81 (SD 0.58) for BC6+XN-1000+BCS+CF. The mean BC volume increased from 47.78 mL (SD 5.09) to 55.59 mL (SD 5.11) following BCS adaptions (P <0.001).

Conclusions: After stepwise protocol optimization, we could produce pathogen-inactivated double-dose PLT concentrates by pooling six BCs, complying with national regulations and EDQM quality requirements while reducing costs and minimizing blood wastage.

背景:全世界的集合血小板(PLT)生产方法各不相同。在欧洲,主要使用缓冲衣(BC)法,将 4 至 8 个缓冲衣汇集在一起生产单剂量或双剂量 PLT 产品。欧洲药品与保健质量管理局(EDQM)血液指南和奥地利法律将治疗用 PLT 单位定义为≥ 2 × 1011 PLTs/单位。我们优化了用六种 BC 生产双糖 PLT 产品的生产步骤,旨在提高生产效率的同时保证产品质量:我们从 5 个 BC(BC5)(N=107)开始逐步优化我们的方案。首先,我们增加了一个 BC(BC6)(N=110)。其次,我们使用了一台配备血库模式的血液分析仪(Sysmex XN-1000),这是一款用于测量 PLT 单位 PLT 计数的新型应用软件(BC6+XN-1000)(N=106)。第三,我们优化了血细胞分离器(BCS)的设置,以产生更高容量的 BCs(BC6+XN-1000+BCS)(N=107)。第四,我们调整了离心方法(BC6+XN-1000+BCS+CF)(N=197)。所有单位均使用 INTERCEPT 血液系统(氨基水杨酸/紫外线 A)进行病原体灭活:结果:每个优化步骤都大大提高了产量(×1011/PLT 浓缩液)(P P 结论:在逐步优化方案后,我们的产量明显增加:在逐步优化方案后,我们可以通过汇集六份 BC 生产出病原体灭活的双剂量 PLT 浓缩液,既符合国家法规和 EDQM 质量要求,又降低了成本并最大限度地减少了血液浪费。
{"title":"Optimized Protocol for Producing Pathogen-inactivated Double-dose Platelet Concentrates From Six Pooled Buffy Coats.","authors":"Marco Amato, Lisa Seekircher, Lena Tschiderer, Peter Willeit, Harald Schennach, Anita Siller","doi":"10.3343/alm.2024.0555","DOIUrl":"10.3343/alm.2024.0555","url":null,"abstract":"<p><strong>Background: </strong>Pooled platelet (PLT) production methods differ worldwide. In Europe, the buffy coat (BC) method is predominantly used, with four to eight BCs being pooled to produce single- or double-dose PLT products. The European Directorate for the Quality of Medicines & HealthCare (EDQM) blood guide and Austrian legislation define a therapeutic PLT unit as ≥ 2 × 10<sup>11</sup> PLTs/unit. We optimized the manufacturing steps to produce double-dose PLT products from six BCs, aiming to enhance production efficiency while maintaining product quality.</p><p><strong>Methods: </strong>We stepwise optimized our protocol starting from five BCs (BC5) (N=107). First, we included an additional BC (BC6) (N=110). Second, we used a hematology analyzer (Sysmex XN-1000) equipped with blood bank mode, which is a novel software application for measuring PLT counts in PLT units (BC6+XN-1000) (N=106). Third, we optimized the blood cell separator (BCS) settings to produce higher-volume BCs (BC6+XN-1000+BCS) (N=107). Fourth, we adapted the centrifugation (BC6+XN-1000+BCS+CF) (N=197). All units were pathogen-inactivated using the INTERCEPT blood system (amotosalen/ultraviolet A).</p><p><strong>Results: </strong>Each optimization step significantly increased the yield ( × 10<sup>11</sup>/PLT concentrate) (<i>P</i> <0.001). The mean yield increased from 2.83 (SD 0.39) for BC5 to 4.81 (SD 0.58) for BC6+XN-1000+BCS+CF. The mean BC volume increased from 47.78 mL (SD 5.09) to 55.59 mL (SD 5.11) following BCS adaptions (<i>P</i> <0.001).</p><p><strong>Conclusions: </strong>After stepwise protocol optimization, we could produce pathogen-inactivated double-dose PLT concentrates by pooling six BCs, complying with national regulations and EDQM quality requirements while reducing costs and minimizing blood wastage.</p>","PeriodicalId":8421,"journal":{"name":"Annals of Laboratory Medicine","volume":" ","pages":"601-608"},"PeriodicalIF":3.9,"publicationDate":"2025-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12535830/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143668943","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Development and Validation of a Lectin-independent Liquid Chromatography-Tandem Mass Spectrometry Method for Serum Glycosylated Alpha-fetoprotein Analysis and Comparison with a Liquid-phase Binding Assay. 凝集素不依赖的液相色谱-串联质谱分析血清糖化甲胎蛋白的方法的建立和验证以及与液相结合法的比较。
IF 4.9 2区 医学 Q1 MEDICAL LABORATORY TECHNOLOGY Pub Date : 2025-10-23 DOI: 10.3343/alm.2025.0003
Hyojin Kim,Juri Park,Hanseul Suh,Saeyoung Lee,Yoonha Park,Won Suk Yang,Dohsik Minn,Soon Sun Kim,Jae Youn Cheong,Je-Hyun Baek
BackgroundAlpha-fetoprotein (AFP) and its isoform AFP-L3 are well-established serum biomarkers for hepatocellular carcinoma (HCC), a common malignancy and a leading cause of cancer-related mortality worldwide. Current methods for measuring these biomarkers are primarily lectin-based assays including the liquid-phase binding assay (LiBA) and liquid chromatography-tandem mass spectrometry (LC-MS/MS), both of which have limitations in diagnostic sensitivity and clinical utility for samples with low AFP concentrations. We aimed to develop a lectin-independent LC-MS/MS method for quantifying fucosylated AFP proteins (AFP-Fuc%).MethodsWe conducted analytical validation, including method comparisons, over 2 months. The analytical sensitivity and diagnostic performance of this method were evaluated using 525 human serum samples-235 from HCC patients and 290 from non-HCC individuals-and compared with those of LiBA, which measured AFP-L3 levels.ResultsThe LC-MS/MS method demonstrated acceptable within-laboratory imprecision (CVs<17.1%) without detectable bias, carryover, or matrix effects. Our method exhibited a broader linear dynamic range (spanning five orders of magnitude) and 10-fold higher analytical sensitivity than LiBA. The diagnostic performance of our method was significantly superior to that of LiBA, particularly in patients with low AFP concentrations (<7 ng/mL, P <0.001), with improved accuracy, sensitivity, and precision at a specificity of 96.2%.ConclusionsThe validated LC-MS/MS method demonstrated robust analytical performance and superior diagnostic accuracy over LiBA for HCC diagnosis while avoiding the inherent limitations of lectin-based assays. Our LC-MS/MS assay shows promise for early HCC detection and may contribute to enhanced patient care.
甲胎蛋白(AFP)及其异构体AFP- l3是公认的肝细胞癌(HCC)血清生物标志物,HCC是一种常见的恶性肿瘤,也是全球癌症相关死亡的主要原因。目前测量这些生物标志物的方法主要是基于凝集素的分析,包括液相结合分析(LiBA)和液相色谱-串联质谱分析(LC-MS/MS),这两种方法在诊断敏感性和临床应用方面都有局限性,用于低AFP浓度的样品。我们的目的是建立一种不依赖凝集素的LC-MS/MS方法来定量浓缩AFP蛋白(AFP- fuc %)。方法进行为期2个月的分析验证,包括方法比较。使用525份人血清样本(235份来自HCC患者,290份来自非HCC患者)对该方法的分析敏感性和诊断性能进行了评估,并与LiBA测定的AFP-L3水平进行了比较。结果LC-MS/MS方法具有可接受的实验室内不精密度(CVs<17.1%),没有可检测到的偏倚、携带或基质效应。我们的方法具有更宽的线性动态范围(跨越5个数量级)和比LiBA高10倍的分析灵敏度。本方法的诊断性能明显优于LiBA,特别是在AFP浓度较低(<7 ng/mL, P <0.001)的患者中,准确度、灵敏度和精密度均有提高,特异性为96.2%。结论经验证的LC-MS/MS方法在HCC诊断中表现出强大的分析性能和更高的诊断准确性,同时避免了基于凝集素的检测的固有局限性。我们的LC-MS/MS分析显示了早期HCC检测的希望,并可能有助于加强患者护理。
{"title":"Development and Validation of a Lectin-independent Liquid Chromatography-Tandem Mass Spectrometry Method for Serum Glycosylated Alpha-fetoprotein Analysis and Comparison with a Liquid-phase Binding Assay.","authors":"Hyojin Kim,Juri Park,Hanseul Suh,Saeyoung Lee,Yoonha Park,Won Suk Yang,Dohsik Minn,Soon Sun Kim,Jae Youn Cheong,Je-Hyun Baek","doi":"10.3343/alm.2025.0003","DOIUrl":"https://doi.org/10.3343/alm.2025.0003","url":null,"abstract":"BackgroundAlpha-fetoprotein (AFP) and its isoform AFP-L3 are well-established serum biomarkers for hepatocellular carcinoma (HCC), a common malignancy and a leading cause of cancer-related mortality worldwide. Current methods for measuring these biomarkers are primarily lectin-based assays including the liquid-phase binding assay (LiBA) and liquid chromatography-tandem mass spectrometry (LC-MS/MS), both of which have limitations in diagnostic sensitivity and clinical utility for samples with low AFP concentrations. We aimed to develop a lectin-independent LC-MS/MS method for quantifying fucosylated AFP proteins (AFP-Fuc%).MethodsWe conducted analytical validation, including method comparisons, over 2 months. The analytical sensitivity and diagnostic performance of this method were evaluated using 525 human serum samples-235 from HCC patients and 290 from non-HCC individuals-and compared with those of LiBA, which measured AFP-L3 levels.ResultsThe LC-MS/MS method demonstrated acceptable within-laboratory imprecision (CVs<17.1%) without detectable bias, carryover, or matrix effects. Our method exhibited a broader linear dynamic range (spanning five orders of magnitude) and 10-fold higher analytical sensitivity than LiBA. The diagnostic performance of our method was significantly superior to that of LiBA, particularly in patients with low AFP concentrations (<7 ng/mL, P <0.001), with improved accuracy, sensitivity, and precision at a specificity of 96.2%.ConclusionsThe validated LC-MS/MS method demonstrated robust analytical performance and superior diagnostic accuracy over LiBA for HCC diagnosis while avoiding the inherent limitations of lectin-based assays. Our LC-MS/MS assay shows promise for early HCC detection and may contribute to enhanced patient care.","PeriodicalId":8421,"journal":{"name":"Annals of Laboratory Medicine","volume":"8 1","pages":""},"PeriodicalIF":4.9,"publicationDate":"2025-10-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145339016","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Unique TTR Variants D38A and M13dup Among Korean Patients with Hereditary Transthyretin Amyloidosis: A Retrospective Single-Center Cohort Study. 韩国遗传性转甲状腺蛋白淀粉样变性患者中独特的TTR变体D38A和M13dup:一项回顾性单中心队列研究
IF 4.9 2区 医学 Q1 MEDICAL LABORATORY TECHNOLOGY Pub Date : 2025-10-17 DOI: 10.3343/alm.2025.0236
Min-Seung Park,Jae Joon Lee,Darae Kim,Jin-Oh Choi,Seok Jin Kim,Kihyun Kim,Ju-Hong Min,Hyun-Young Kim,Hee-Jin Kim
BackgroundTransthyretin amyloidosis, a protein-misfolding disorder characterized by systemic amyloid deposition, can be classified as wild-type transthyretin amyloidosis (ATTRwt) or hereditary transthyretin amyloidosis (ATTRv), depending on the presence of transthyretin (TTR) gene variants. We examined the genetic distribution of TTR variants in Korean patients diagnosed with ATTRv.MethodsWe retrospectively reviewed 801 participants who underwent TTR analysis at Samsung Medical Center from 2012 to 2024. The participants were categorized into two groups: in-house probands or relatives, and externally referred probands or relatives.ResultsPathogenic or likely pathogenic TTR variants were detected in 36 of 165 in-house probands (21.8%), among which D38A was the most frequent variant (50.0%; 18/36), followed by M13dup and E89K (8.3% each). Among referred probands, D38A was predominant (54.5%; 12/22), followed by M13dup (22.7%; 5/22). Cardiac amyloid involvement was the most common manifestation, observed in 97.2% (35/36) of in-house probands with ATTRv, followed by peripheral nervous system (PNS; 94.4%) and autonomic nervous system (ANS; 88.9%) involvement. In contrast, ANS involvement was most prevalent among in-house relatives who underwent organ evaluation (61.5%; 24/39), followed by cardiac (52.1%; 25/48) and PNS (48.7%; 19/39) involvement. Five of the eight in-house relatives harboring M13dup (62.5%) showed organ involvement, primarily in the ANS, supporting the pathogenicity of this variant.ConclusionsThis study provides the largest single-institution dataset of Korean patients with ATTRv, incorporating systematic organ assessments. The predominance of the unique TTR variants D38A and M13dup delineates a distinct genetic landscape that may facilitate accurate and timely diagnosis of ATTRv in the Korean population.
甲状腺转蛋白淀粉样变性是一种以系统性淀粉样蛋白沉积为特征的蛋白质错误折叠疾病,根据甲状腺转蛋白(TTR)基因变异的存在,可分为野生型甲状腺转蛋白淀粉样变性(ATTRwt)或遗传性甲状腺转蛋白淀粉样变性(ATTRv)。我们检查了诊断为ATTRv的韩国患者中TTR变异的遗传分布。方法回顾性分析2012 ~ 2024年在三星医院接受TTR分析的801例患者。参与者被分为两组:内部先证者或亲属,和外部推荐先证者或亲属。结果165个内部先证者中检出致病性或可能致病性TTR变异36个(21.8%),其中D38A变异最多(50.0%;18/36),其次为M13dup和E89K(8.3%)。参考先证者中以D38A居多(54.5%;12/22),其次为M13dup(22.7%; 5/22)。心脏淀粉样蛋白受累是最常见的表现,97.2%(35/36)的内部先证患者观察到心脏淀粉样蛋白受累,其次是周围神经系统(PNS, 94.4%)和自主神经系统(ANS, 88.9%)受累。相比之下,在接受器官评估的内部亲属中,ANS受累最为普遍(61.5%,24/39),其次是心脏(52.1%,25/48)和PNS(48.7%, 19/39)受累。携带M13dup的8个内部亲属中有5个(62.5%)显示器官受累,主要在ANS,支持该变异的致病性。本研究提供了韩国ATTRv患者最大的单机构数据集,包括系统的器官评估。独特的TTR变体D38A和M13dup的优势描绘了一个独特的遗传景观,可能有助于准确和及时地诊断韩国人群中的ATTRv。
{"title":"Unique TTR Variants D38A and M13dup Among Korean Patients with Hereditary Transthyretin Amyloidosis: A Retrospective Single-Center Cohort Study.","authors":"Min-Seung Park,Jae Joon Lee,Darae Kim,Jin-Oh Choi,Seok Jin Kim,Kihyun Kim,Ju-Hong Min,Hyun-Young Kim,Hee-Jin Kim","doi":"10.3343/alm.2025.0236","DOIUrl":"https://doi.org/10.3343/alm.2025.0236","url":null,"abstract":"BackgroundTransthyretin amyloidosis, a protein-misfolding disorder characterized by systemic amyloid deposition, can be classified as wild-type transthyretin amyloidosis (ATTRwt) or hereditary transthyretin amyloidosis (ATTRv), depending on the presence of transthyretin (TTR) gene variants. We examined the genetic distribution of TTR variants in Korean patients diagnosed with ATTRv.MethodsWe retrospectively reviewed 801 participants who underwent TTR analysis at Samsung Medical Center from 2012 to 2024. The participants were categorized into two groups: in-house probands or relatives, and externally referred probands or relatives.ResultsPathogenic or likely pathogenic TTR variants were detected in 36 of 165 in-house probands (21.8%), among which D38A was the most frequent variant (50.0%; 18/36), followed by M13dup and E89K (8.3% each). Among referred probands, D38A was predominant (54.5%; 12/22), followed by M13dup (22.7%; 5/22). Cardiac amyloid involvement was the most common manifestation, observed in 97.2% (35/36) of in-house probands with ATTRv, followed by peripheral nervous system (PNS; 94.4%) and autonomic nervous system (ANS; 88.9%) involvement. In contrast, ANS involvement was most prevalent among in-house relatives who underwent organ evaluation (61.5%; 24/39), followed by cardiac (52.1%; 25/48) and PNS (48.7%; 19/39) involvement. Five of the eight in-house relatives harboring M13dup (62.5%) showed organ involvement, primarily in the ANS, supporting the pathogenicity of this variant.ConclusionsThis study provides the largest single-institution dataset of Korean patients with ATTRv, incorporating systematic organ assessments. The predominance of the unique TTR variants D38A and M13dup delineates a distinct genetic landscape that may facilitate accurate and timely diagnosis of ATTRv in the Korean population.","PeriodicalId":8421,"journal":{"name":"Annals of Laboratory Medicine","volume":"57 1","pages":""},"PeriodicalIF":4.9,"publicationDate":"2025-10-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145305324","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Clinico-hematopathologic and Genetic Characteristics of Korean Patients with Blastic Plasmacytoid Dendritic Cell Neoplasm: A Retrospective Single-center Cohort Study. 韩国胚浆细胞样树突状细胞肿瘤患者的临床-血液病理学和遗传特征:一项回顾性单中心队列研究。
IF 4.9 2区 医学 Q1 MEDICAL LABORATORY TECHNOLOGY Pub Date : 2025-10-16 DOI: 10.3343/alm.2025.0395
Jiyeon Kim,Miyoung Kim,Daehyun Chu,Young-Uk Cho,Sang-Hyun Hwang,Seongsoo Jang,Eul-Ju Seo,Eun-Ji Choi,Han-Seung Park,Jung-Hee Lee,Je-Hwan Lee,Dok Hyun Yoon,Heounjeong Go,Chan Sik Park,Kyoo-Hyung Lee,Chan-Jeoung Park,Seungwoo Hwang
BackgroundBlastic plasmacytoid dendritic cell neoplasms (BPDCNs) are rare and aggressive hematologic malignancies with poorly defined molecular characteristics. Genetic data for Korean patients with this condition are scarce. We conducted the first network-based analysis of Korean patients with BPDCN, using next-generation sequencing (NGS) alongside clinical, morphological, and cytogenetic evaluations.MethodsWe included 14 patients diagnosed with BPDCN between 2004 and 2021. Clinical, morphological, and cytogenetic data were collected. Conventional karyotyping and targeted NGS were performed. Network analysis was used to link gene variants with known BPDCN-associated genes.ResultsThe median age at diagnosis was 52 yrs; the male:female ratio was 1.8:1. Cutaneous and bone marrow (BM) involvement were observed in 79% and 57% of patients at diagnosis, respectively; 85% of those not lost to follow-up eventually showed BM involvement. Allogeneic hematopoietic stem cell transplantation was associated with longer survival compared with chemotherapy alone (P=0.015). Complex karyotypes were common (87%), with novel chromosomal deletions at 1p, 18q, and 22q. BPDCN samples showed recurrent variations in TET2, ASXL1, and RAS-pathway genes, as well as novel variations in 22 genes, including SMARCD2, DDX3X, and GNB1. Network analysis revealed functional associations between these novel alterations and established BPDCN-related genes.ConclusionsWe present the first network-based analysis of Korean patients with BPDCN, along with conventional genetic assessments, highlighting the potential genetic drivers of BPDCN and facilitating the development of targeted therapies for the disease.
背景:母细胞浆细胞样树突状细胞肿瘤(BPDCNs)是一种罕见的侵袭性血液系统恶性肿瘤,其分子特征不明确。韩国患者的遗传资料很少。我们对韩国BPDCN患者进行了首次基于网络的分析,使用下一代测序(NGS)以及临床、形态学和细胞遗传学评估。方法纳入2004年至2021年间诊断为BPDCN的14例患者。收集临床、形态学和细胞遗传学数据。进行常规核型和靶向NGS。使用网络分析将基因变异与已知的bpdcn相关基因联系起来。结果诊断时中位年龄52岁;男女比例为1.8:1。在诊断时分别有79%和57%的患者累及皮肤和骨髓;在随访中未丢失的患者中,85%的患者最终表现出脑卒中。与单纯化疗相比,异基因造血干细胞移植与更长的生存期相关(P=0.015)。复杂核型很常见(87%),在1p、18q和22q处有新的染色体缺失。BPDCN样本显示TET2、ASXL1和ras通路基因的反复变异,以及包括SMARCD2、DDX3X和GNB1在内的22个基因的新变异。网络分析揭示了这些新变化与已建立的bpdcn相关基因之间的功能关联。我们首次对韩国BPDCN患者进行了基于网络的分析,同时进行了传统的遗传评估,突出了BPDCN的潜在遗传驱动因素,并促进了该疾病靶向治疗的发展。
{"title":"Clinico-hematopathologic and Genetic Characteristics of Korean Patients with Blastic Plasmacytoid Dendritic Cell Neoplasm: A Retrospective Single-center Cohort Study.","authors":"Jiyeon Kim,Miyoung Kim,Daehyun Chu,Young-Uk Cho,Sang-Hyun Hwang,Seongsoo Jang,Eul-Ju Seo,Eun-Ji Choi,Han-Seung Park,Jung-Hee Lee,Je-Hwan Lee,Dok Hyun Yoon,Heounjeong Go,Chan Sik Park,Kyoo-Hyung Lee,Chan-Jeoung Park,Seungwoo Hwang","doi":"10.3343/alm.2025.0395","DOIUrl":"https://doi.org/10.3343/alm.2025.0395","url":null,"abstract":"BackgroundBlastic plasmacytoid dendritic cell neoplasms (BPDCNs) are rare and aggressive hematologic malignancies with poorly defined molecular characteristics. Genetic data for Korean patients with this condition are scarce. We conducted the first network-based analysis of Korean patients with BPDCN, using next-generation sequencing (NGS) alongside clinical, morphological, and cytogenetic evaluations.MethodsWe included 14 patients diagnosed with BPDCN between 2004 and 2021. Clinical, morphological, and cytogenetic data were collected. Conventional karyotyping and targeted NGS were performed. Network analysis was used to link gene variants with known BPDCN-associated genes.ResultsThe median age at diagnosis was 52 yrs; the male:female ratio was 1.8:1. Cutaneous and bone marrow (BM) involvement were observed in 79% and 57% of patients at diagnosis, respectively; 85% of those not lost to follow-up eventually showed BM involvement. Allogeneic hematopoietic stem cell transplantation was associated with longer survival compared with chemotherapy alone (P=0.015). Complex karyotypes were common (87%), with novel chromosomal deletions at 1p, 18q, and 22q. BPDCN samples showed recurrent variations in TET2, ASXL1, and RAS-pathway genes, as well as novel variations in 22 genes, including SMARCD2, DDX3X, and GNB1. Network analysis revealed functional associations between these novel alterations and established BPDCN-related genes.ConclusionsWe present the first network-based analysis of Korean patients with BPDCN, along with conventional genetic assessments, highlighting the potential genetic drivers of BPDCN and facilitating the development of targeted therapies for the disease.","PeriodicalId":8421,"journal":{"name":"Annals of Laboratory Medicine","volume":"92 1","pages":""},"PeriodicalIF":4.9,"publicationDate":"2025-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145296053","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Detection of Fusion Genes Using RNA Sequencing in Acute Leukemia. 应用RNA测序检测急性白血病融合基因。
IF 4.9 2区 医学 Q1 MEDICAL LABORATORY TECHNOLOGY Pub Date : 2025-10-16 DOI: 10.3343/alm.2025.0300
Hyun-Young Kim,Boram Kim,Min-Seung Park,Jong-Ho Park,Hee Young Ju,Keon Hee Yoo,Jun Ho Jang,Chul Won Jung,Hee-Jin Kim
BackgroundFusion genes are major drivers of acute leukemia. Conventional diagnostics are limited in detecting the diverse fusions included in recently updated acute leukemia classifications. We evaluated the fusion detection performance of RNA sequencing (RNA-seq) compared with that of conventional diagnostics in patients with acute leukemia.MethodsWe retrospectively obtained the data of 101 patients with acute leukemia who underwent conventional diagnostics (i.e., karyotyping, FISH, or multiplex reverse transcription PCR) at diagnosis at Samsung Medical Center, Seoul, Korea, between September 2022 and September 2023. Whole RNA-seq was performed using the Illumina Stranded mRNA Prep kit (Illumina, San Diego, CA, USA). The concordance, sensitivity, and specificity of RNA-seq for fusion gene detection were compared with those of conventional diagnostics.ResultsRNA-seq helped identify 52 fusion genes in 51 (50.5%) of 101 patients, with detection rates of 40.7%, 70.3%, 37.5%, and 50% in acute myeloid leukemia, B-cell acute lymphoblastic leukemia, T-cell acute lymphoblastic leukemia, and mixed-phenotype acute leukemia, respectively. RNA-seq showed 83.3% sensitivity and 80.8% concordance with conventional diagnostics; it missed eight fusions, likely because of low transcript abundance or enhancer hijacking. RNA-seq also helped clarify three previously unspecified rearrangements and detected 12 fusions (21.4%) in 56 cases that tested negative with conventional diagnostics, including four novel (KMT2A::THAP12, RUNX1::PRPF19, MLLT10::UBE2L6, and FUS::ZNF362) and three rare (HNRNPH1::ERG, RUNX1::USP42, and ETV6::NCOA2) fusions.ConclusionsThis was the first study to evaluate the performance of whole RNA-seq in fusion detection in patients with acute leukemia in Korea. Incorporating RNA-seq into diagnostic workflows may facilitate earlier and more precise therapeutic decisions and improve prognostic assessment in patients with acute leukemia.
融合基因是急性白血病的主要驱动因素。常规诊断在检测不同的融合包括在最近更新的急性白血病分类是有限的。我们评估了RNA测序(RNA-seq)与常规诊断方法在急性白血病患者中的融合检测性能。方法回顾性分析2022年9月至2023年9月在韩国首尔三星医疗中心进行常规诊断(即核型、FISH或多重反转录PCR)的101例急性白血病患者的资料。全rna测序使用Illumina搁浅mRNA Prep试剂盒(Illumina, San Diego, CA, USA)。将RNA-seq检测融合基因的一致性、敏感性和特异性与常规诊断方法进行比较。结果101例急性髓系白血病、b细胞急性淋巴母细胞白血病、t细胞急性淋巴母细胞白血病和混合表型急性白血病中,51例(50.5%)的rna -seq共鉴定出52个融合基因,检出率分别为40.7%、70.3%、37.5%和50%。RNA-seq的敏感性为83.3%,与常规诊断的一致性为80.8%;它错过了8个融合,可能是因为转录物丰度低或增强子劫持。RNA-seq还帮助澄清了以前未明确的三种重排,并在56例常规诊断阴性的病例中检测到12种融合(21.4%),包括4种新型融合(KMT2A::THAP12、RUNX1::PRPF19、MLLT10::UBE2L6和FUS::ZNF362)和3种罕见融合(HNRNPH1::ERG、RUNX1::USP42和ETV6::NCOA2)。结论:这是韩国首次评估全RNA-seq在急性白血病患者融合检测中的表现。将RNA-seq纳入诊断工作流程可能有助于更早和更精确的治疗决策,并改善急性白血病患者的预后评估。
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引用次数: 0
Peak and Trough Concentration Ranges of Factor Xa Inhibitors for Preventing Thromboembolic Stroke in Korean Patients with Non-valvular Atrial Fibrillation. 韩国非瓣膜性心房颤动患者Xa因子抑制剂预防血栓栓塞性卒中的峰谷浓度范围
IF 4.9 2区 医学 Q1 MEDICAL LABORATORY TECHNOLOGY Pub Date : 2025-10-14 DOI: 10.3343/alm.2025.0144
Jong-Sung Park,Kyung Hee Lim,Dae-Hyun Kim,Kwang-Min Lee,Kwang-Sook Woo,Jin-Yeong Han
BackgroundCurrent guidelines recommend factor IIa- or Xa-specific inhibitors over warfarin analogs for preventing thromboembolic stroke in patients with atrial fibrillation (AF). However, their plasma concentrations in Korean patients are not well understood.MethodsWe conducted a single-center laboratory study to determine the distribution ranges of peak and trough concentrations of three factor Xa inhibitors (apixaban, edoxaban, and rivaroxaban) prescribed for preventing strokes in patients with AF. Patients receiving one of these drugs and undergoing blood specimen collection for laboratory tests were screened. Blood specimens were obtained from patients who had adhered to the prescribed drug regimen consistently for at least 1 week. Drug plasma concentrations were measured using heparin liquid-reagent technology-based anti-Xa chromogenic assays.ResultsWe selected 459 patients who were taking standard or on-label-reduced doses of apixaban (N=252), edoxaban (N=182), or rivaroxaban (N=25). The 5th-95th percentile ranges of the peak concentrations were 84-414 ng/mL (apixaban), 72-424 ng/mL (edoxaban), and 97-517 ng/mL (rivaroxaban). The respective 5th-95th percentile ranges of the trough concentrations were 44-237 ng/mL, 23-93 ng/mL, and 13-219 ng/mL. Approximately 19.6% (apixaban), 33.3% (edoxaban), and 64.0% (rivaroxaban) of patients in each group had peak concentrations out of the predicted distribution ranges based on pharmacokinetic data. Approximately 7.3%, 52.8%, and 8.3% of patients had trough concentrations out of the predicted distribution ranges.ConclusionsA considerable proportion of Korean patients with AF taking factor Xa inhibitors may require population-specific reference ranges to guide therapeutic monitoring.
背景:目前的指南推荐使用IIa或xa特异性因子抑制剂而不是华法林类似物来预防房颤(AF)患者的血栓栓塞性卒中。然而,它们在韩国患者中的血浆浓度尚不清楚。方法通过单中心实验室研究,确定用于预防房颤患者卒中的三种Xa因子抑制剂(阿哌沙班、依多沙班和利伐沙班)的峰谷浓度分布范围。筛选接受其中一种药物治疗并进行血液标本采集以进行实验室检查的患者。从坚持处方药物方案至少1周的患者获得血液标本。采用基于肝素液体试剂技术的抗xa显色法测定药物血浆浓度。结果我们选择了459例患者,他们分别服用标准剂量或标签上减少剂量的阿哌沙班(N=252)、依多沙班(N=182)或利伐沙班(N=25)。峰浓度的第5 ~ 95百分位范围分别为阿哌沙班84 ~ 414 ng/mL、依多沙班72 ~ 424 ng/mL、利伐沙班97 ~ 517 ng/mL。波谷浓度的第5 ~ 95百分位范围分别为44 ~ 237 ng/mL、23 ~ 93 ng/mL和13 ~ 219 ng/mL。每组中约19.6%(阿哌沙班)、33.3%(依多沙班)和64.0%(利伐沙班)患者的峰值浓度超出基于药代动力学数据的预测分布范围。大约7.3%、52.8%和8.3%的患者的谷浓度超出了预测的分布范围。结论相当比例的韩国房颤患者服用Xa因子抑制剂可能需要人群特异性参考范围来指导治疗监测。
{"title":"Peak and Trough Concentration Ranges of Factor Xa Inhibitors for Preventing Thromboembolic Stroke in Korean Patients with Non-valvular Atrial Fibrillation.","authors":"Jong-Sung Park,Kyung Hee Lim,Dae-Hyun Kim,Kwang-Min Lee,Kwang-Sook Woo,Jin-Yeong Han","doi":"10.3343/alm.2025.0144","DOIUrl":"https://doi.org/10.3343/alm.2025.0144","url":null,"abstract":"BackgroundCurrent guidelines recommend factor IIa- or Xa-specific inhibitors over warfarin analogs for preventing thromboembolic stroke in patients with atrial fibrillation (AF). However, their plasma concentrations in Korean patients are not well understood.MethodsWe conducted a single-center laboratory study to determine the distribution ranges of peak and trough concentrations of three factor Xa inhibitors (apixaban, edoxaban, and rivaroxaban) prescribed for preventing strokes in patients with AF. Patients receiving one of these drugs and undergoing blood specimen collection for laboratory tests were screened. Blood specimens were obtained from patients who had adhered to the prescribed drug regimen consistently for at least 1 week. Drug plasma concentrations were measured using heparin liquid-reagent technology-based anti-Xa chromogenic assays.ResultsWe selected 459 patients who were taking standard or on-label-reduced doses of apixaban (N=252), edoxaban (N=182), or rivaroxaban (N=25). The 5th-95th percentile ranges of the peak concentrations were 84-414 ng/mL (apixaban), 72-424 ng/mL (edoxaban), and 97-517 ng/mL (rivaroxaban). The respective 5th-95th percentile ranges of the trough concentrations were 44-237 ng/mL, 23-93 ng/mL, and 13-219 ng/mL. Approximately 19.6% (apixaban), 33.3% (edoxaban), and 64.0% (rivaroxaban) of patients in each group had peak concentrations out of the predicted distribution ranges based on pharmacokinetic data. Approximately 7.3%, 52.8%, and 8.3% of patients had trough concentrations out of the predicted distribution ranges.ConclusionsA considerable proportion of Korean patients with AF taking factor Xa inhibitors may require population-specific reference ranges to guide therapeutic monitoring.","PeriodicalId":8421,"journal":{"name":"Annals of Laboratory Medicine","volume":"102 1","pages":""},"PeriodicalIF":4.9,"publicationDate":"2025-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145283975","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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Annals of Laboratory Medicine
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