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Функция транскрипционного фактора XlnR у мицелиального гриба Penicillium verruculosum 菌丝体真菌真菌XlnR转录因子函数
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-01-01 DOI: 10.56304/s0234275822060084
В. Ю. Кислицин, А. М. Чулкин, И. Н. Зоров, И.Г. Синельников, А. П. Синицын, А. М. Рожкова
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引用次数: 0
Биотехнологический подход к интенсификации производства соевого солода 大豆麦芽强化生物技术方法
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-01-01 DOI: 10.56304/s0234275822060096
Ю. Ю. Миллер, Т. Ф. Киселева
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引用次数: 0
Effect of Persulfates on Production of Carotenoids in the Rhodosporidium sphaerocarpum, R. diobovatum and Rhodotorula glutinis Yeast Cultures 过硫酸盐对球形红孢子虫、二bovatum红孢子虫和粘红酵母培养物产生类胡萝卜素的影响
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2021-01-01 DOI: 10.21519/0234-2758-2021-37-3-20-28
Ya. A. Delegan, T. Antipova, M. Vainshtein
The methods for increasing the isolation of carotenoids from yeast producer cultures have been compared. It was shown that the optimal procedure is microwave pretreatment (2450 GHz, 600 W, 40 s) with subsequent extraction of the target products with methanol. Additives of sodium persulfate or ammonium persulfate to aerated culture medium provided additional oxygen sources for the yeast and increased the medium redox potential. The introduction of persulfate led to a 1.3-fold increase in the content of colored carotenoids in the R. dubiovatum VKPM Y-305 biomass as compared to the control without persulfate. In the R. sphaerocarpum VKPM Y-1559 biomass, persulfate at concentrations of 0.15 g/L and 0.50 g/L increased the content of colored carotenoids by 1.3 and 1.4 times, respectively. The optimal persulfate concentent depends on the yeast growth phase and time of exposure to the compound. Higher persulfate concentrations resulted in increased redox potential and discoloration of carotenoids, though without yeast cell death. yeasts, carotenoids, medium redox potential, persulfate
比较了从酵母生产者培养物中提高类胡萝卜素分离率的方法。结果表明,最佳工艺为微波预处理(2450 GHz, 600 W, 40 s),再用甲醇提取目标产物。在曝气培养基中添加过硫酸钠或过硫酸铵,为酵母提供了额外的氧源,提高了培养基的氧化还原电位。与未添加过硫酸盐的对照相比,引入过硫酸盐可使双鱼VKPM Y-305生物量中有色类胡萝卜素含量增加1.3倍。过硫酸盐浓度为0.15 g/L和0.50 g/L时,可使圆木VKPM Y-1559生物量中有色类胡萝卜素含量分别提高1.3倍和1.4倍。最佳过硫酸盐浓度取决于酵母生长阶段和暴露于化合物的时间。较高的过硫酸盐浓度导致氧化还原电位增加和类胡萝卜素变色,但没有酵母细胞死亡。酵母,类胡萝卜素,中等氧化还原电位,过硫酸盐
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引用次数: 1
Obtaining and Purification of Recombinant Domain III of Human Alpha-Fetoprotein 人甲胎蛋白重组结构域III的获得与纯化
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2021-01-01 DOI: 10.21519/0234-2758-2021-37-4-32-42
M. Mollaev, A. Zabolotskii, D. A. Mazalev, N. Gorokhovets, M. Sokol, M. R. Mollaeva, M. Fomicheva, A. Pshenichnikova, E. D. Nikolskaya
Previous studies have demonstrated the applicability of alpha-fetoprotein or its receptor-binding domain fused to the 6-histidine tag at the C-terminus (rAFP3D-His6) as vectors for targeted delivery of antitumor agents. This tag is undesirable for further preclinical trials. Therefore, we designed a recombinant protein rAFP3D without any affine tags, and accessed its functional activity. The protein was produced as inclusion bodies in Escherichia coli BL21 (DE3) cells. Optimal conditions for washing inclusion bodies and refolding the target protein were selected. We used a saturated solution of (NH4)2SO4 as the primary purification step to precipitate the main fraction of protein admixtures. The second purification step included hydrophobic chromatography using butyl-cellulose. The identity of the protein sequence was confirmed by tandem mass spectrometry. Circular dichroism demonstrated the authenticity of the secondary structure. Fluorescently labeled rAFP3D actively penetrated into MCF-7 tumor cells. These results indicate that rAFP3D can be used for targeted drug delivery. Key words: alpha-fetoprotein, receptor-binding domain, recombinant protein, MALDI-MS, HPLC, drug delivery system Funding - The project was supported with Russian Foundation for Basic Research (project no. 18-29-09022/20).
先前的研究表明,甲胎蛋白或其c端融合到6-组氨酸标签的受体结合域(rAFP3D-His6)可作为靶向递送抗肿瘤药物的载体。这个标签不适合进一步的临床前试验。因此,我们设计了一个不含任何仿射标签的重组蛋白rAFP3D,并对其功能活性进行了分析。该蛋白以包涵体的形式在大肠杆菌BL21 (DE3)细胞中产生。选择了包涵体洗涤和目标蛋白再折叠的最佳条件。我们使用饱和的(NH4)2SO4溶液作为主要纯化步骤,沉淀蛋白质混合物的主要部分。第二步是用丁基纤维素疏水色谱法。串联质谱分析证实了该蛋白序列的一致性。圆二色性证明了二级结构的真实性。荧光标记的rAFP3D积极渗透到MCF-7肿瘤细胞中。这些结果表明,rAFP3D可用于靶向给药。关键词:甲胎蛋白,受体结合域,重组蛋白,MALDI-MS, HPLC,给药系统18-29-09022/20)。
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引用次数: 3
Application of Mass Spectrometry Methods to the Analysis of Lipid Composition of the Human Brain 质谱法在人脑脂质组成分析中的应用
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2021-01-01 DOI: 10.21519/0234-2758-2021-37-5-80-87
A. Tkachev, M. Osetrova, D. Smirnov, O. Efimova, E.E. Khrameev
Abstract-Lipids make up more than half of the dry matter of the human brain and play a key role in its functioning. However, the lipid composition of the brain anatomical structures remains poorly understood. The first such studies were carried out more than 50 years ago, but since then, a small number of works have been published describing the concentration of lipids in only a few areas of the human brain. A fundamentally new step towards understanding the molecular organization of the brain and identifying the molecular basis of human cognitive abilities should be a detailed large-scale study of the brain lipidome. However, there is no description in the literature of methods optimized for studying the lipid composition of the human brain. In this work, we develop and present methods for lipid extraction and mass spectrometry analysis, which ensure simultaneous detection of the maximum amount of different lipid classes and individual substances in the human brain, as well as the approaches to bioinformatics analysis of the obtained data. Their use makes it possible to create a comprehensive picture of the molecular organization of the human brain, which has no analogues in the world in terms of its completeness. Key words: lipidome, brain, mass spectrometry, high-performance liquid chromatography, bioinformatics The reported study was funded by the Russian Foundation for Basic Research, project no. 20-34-70077.
脂质占人脑干物质的一半以上,在其功能中起着关键作用。然而,脑解剖结构的脂质组成仍然知之甚少。第一次这样的研究是在50多年前进行的,但从那以后,发表的少量作品只描述了人类大脑中少数区域的脂质浓度。了解大脑的分子组织和确定人类认知能力的分子基础的一个根本的新步骤应该是对脑脂质组进行详细的大规模研究。然而,在文献中还没有描述研究人脑脂质组成的优化方法。在这项工作中,我们开发并提出了脂质提取和质谱分析的方法,确保同时检测人脑中不同脂质类别和单个物质的最大数量,以及获得数据的生物信息学分析方法。它们的使用使我们有可能创造出一幅人类大脑分子组织的全面图景,就其完整性而言,这是世界上没有类似物的。关键词:脂质组,脑,质谱,高效液相色谱,生物信息学。20-34-70077。
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引用次数: 0
Prospects for the Use of Xylotrophic Fungi Pleurotus ostreatus Florida and Schizophyllum commune for Mycoremediation of Soils Contaminated with Oil Hydrocarbons and Surfactants 木营养真菌平菇(Pleurotus ostreatus Florida)和裂叶菌(Schizophyllum commune)在石油烃和表面活性剂污染土壤的真菌修复中的应用前景
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2021-01-01 DOI: 10.21519/0234-2758-2021-37-5-108-116
E. Dubrovskaya, V. Grinev, O. Turkovskaya
Abstract-A model system for the successful mycoremediation of soil contaminated with real oil pollution has been developed on the basis of Pleurotus ostreatus Florida grown on a natural substrate (husk, straw). It was shown that under these conditions, mycoremediation was observed during 2 weeks at 24° C with oil contamination of up to 22 g/kg and inoculum/soil ratio of 1:10. The solid-phase P. ostreatus inoculums grown on straw induced the production of highly active ligninolytic enzymes, laccases and hybrid peroxidases. This allows us to recommend this inoculum for the development of technologies for mycoremediation of soils contaminated with mixtures of pollutants with a high content of aromatic fractions. Based on the solid-phase inoculum of Schizophyllum commune grown on a natural substrate (pine sawdust), a semi-submerged model system was developed, which can be repeatedly used for the degradation of surfactants in the soil. In this case, sawdust can be considered not only as a source of carbon and energy for the fungus, but also as a kind of natural carrier for its immobilization. This model system based on S. commune grown on a natural substrate can also be recommended for the development of ecological biotechnologies on its basis. Key words: mycoremediation, basidiomycetes, oil, surfactants, ligninolytic enzymes This work was carried out and funded within the framework of theme No. 121031700141-7 (IBPPM RAS) with partial support of the Russian Science Foundation (project no. 16-14-00081 "Fungi for Environmentally Significant Biotechnologies") (degradation of surfactants) and of the Russian Foundation for Basic Research (project no. 18-29-05062 "Development of Scientific Foundations of a New Integrated Biotechnology for Oil Spill Response in the Arid Climate Zone") (mycoremediation of oil-contaminated soil).
摘要/ abstract摘要:以平菇(Pleurotus ostreatus Florida)为材料,在天然基质(谷壳、秸秆)上生长,建立了一种成功的微生物修复实际石油污染土壤的模型系统。结果表明,在此条件下,在24°C条件下,2周内,油污染达到22 g/kg,接种量/土壤比为1:10,可以观察到微修复。固相ostreatus接种在秸秆上可诱导产生高活性的木质素分解酶、漆酶和杂交过氧化物酶。这使我们能够推荐这种接种物用于开发含有高含量芳烃组分的污染物混合物污染的土壤的微生物修复技术。以裂叶菌(Schizophyllum commune)在天然基质(松木屑)上生长的固相接种物为基础,建立了半浸没模式系统,该系统可反复用于土壤中表面活性剂的降解。在这种情况下,木屑不仅可以作为真菌的碳和能量来源,而且可以作为真菌固定的一种天然载体。该模型系统在自然基质上生长,也可为生态生物技术的开发提供参考。关键词:真菌修复,担子菌,油,表面活性剂,木质素降解酶本工作在IBPPM RAS项目(121031700141-7)框架内开展和资助,俄罗斯科学基金项目(项目编号:121031700141-7)提供部分支持。“真菌用于环境重要生物技术”)(表面活性剂的降解)和俄罗斯基础研究基金会(项目编号:1614-00081)。“干旱气候区溢油综合生物技术的科学基础研究”,中国农业大学学报(自然科学版)。
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引用次数: 0
Trypsinolysis of Polyurethane Particles Based on Сyclodextrin with Encapsulated Moxifloxacin 包裹莫西沙星Сyclodextrin酶解聚氨酯颗粒的研究
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2021-01-01 DOI: 10.21519/0234-2758-2021-37-5-72-79
L. Yakupova, А.А. Skuredina, Еlena V Kudryashova
Abstract-Moxifloxacin encapsulation in polymer cyclodextrin-based particles with an average hydrodynamic diameter of 150--200 nm has led to the formation of potential delivery systems with a degree of moxifloxacin inclusion of more than 80%. Cross-linking of the moxifloxacin-cyclodextrin complexes caused a pronounced slowdown in the release of the drug molecules in acidic media to less than 10% per day. In the presence of trypsin, the drug release was accelerated by 15--20% within 90 min. It was shown by Fourier-transform infrared spectroscopy that this acceleration was due to the partial enzymatic degradation of the urethane bonds of the polymer matrix near the surface of the particles. The results obtained are important for the development of highly effective oral dosage forms of prolonged action. Key words: fluoroquinolones, cyclodextrins, FTIR spectroscopy, trypsin
莫西沙星包封在平均水动力直径为150 ~ 200 nm的聚合物环糊精基颗粒中,形成了莫西沙星包封度超过80%的潜在递送体系。莫西沙星-环糊精复合物的交联导致药物分子在酸性介质中的释放明显减慢,每天不到10%。在胰蛋白酶存在的情况下,药物释放在90分钟内加速了15- 20%。傅里叶变换红外光谱显示,这种加速是由于颗粒表面附近聚合物基质的氨基甲酸乙酯键的部分酶降解所致。所得结果对开发长效高效口服剂型具有重要意义。关键词:氟喹诺酮类,环糊精,FTIR光谱,胰蛋白酶
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引用次数: 0
Protective Properties of Astaxanthin and its Esters Isolated from the Haematococcus pluvialis Alga during the Photodegradation of Chlorophyll a 雨红球藻虾青素及其酯对叶绿素a光降解的保护作用
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2021-01-01 DOI: 10.21519/0234-2758-2021-37-3-11-19
E.V. Viazau, R. Goncharik, R. Vasilov, A. Selishcheva
The effect of the natural carotenoid astaxanthin (AST) and its esters as inhibitors of chlorophyll (Chl) a photodegradation in the Haematococcus pluvialis unicellular alga has been studied. It was shown that the presence of AST or its esters in low concentrations ((0.67 μM)) suppressed by 15-17% the Chl a destruction as a result of irradiation of a Chl a solution in acetone with white light (250 μmol photons∙m-2∙s-1 for 2 h 20 min). When Chl a solutions were irradiated with blue light (500 μmol∙photons∙m-2∙s-1 for 5 h) in the presence of AST or its esters at high concentrations (AST : Chl a = 5 : 1 mol/mol), the Chl a degradation was suppressed by 40-50%. In a highly polar medium (methanol), the rate of Chl a photodegradation was much higher than in an apolar medium (hexane : acetone = 94 : 6). Esterified AST forms are better protectors of Chl a than unsubstituted AST, which is consistent with the general idea of the predominance of AST esters in the microalga H. pluvialis cells in vivo. The results indicate a possible protective role of AST against Chl a photooxidation in H. pluvialis cells. astaxanthin, chlorophyll, singlet oxygen, photodegradation, Haematococcus pluvialis This work was supported by the Belarusian Republican Foundation for Basic Research (project no. B19РМ-010) and Russian Foundation for Basic Research (project no. 19-54-04003).
本文研究了天然类胡萝卜素虾青素(AST)及其酯类对雨红球菌单细胞藻类叶绿素(Chl) a光降解的抑制作用。结果表明,低浓度(0.67 μM)的AST或其酯的存在抑制了Chl a溶液在丙酮中以250 μmol光子∙m-2∙s-1照射2 h 20 min所造成的15-17%的Chl a破坏。在高浓度AST或其酯(AST: Chl a = 5:1 mol/mol)存在下,以500 μmol∙光子∙m-2∙s-1蓝光照射Chl a溶液5h, Chl a降解被抑制40-50%。在高极性介质(甲醇)中,Chl a的光降解率远高于极性介质(己烷:丙酮= 94:6)。酯化的AST形式比未取代的AST更好地保护了Chl a,这与在体内微藻H. pluvialis细胞中AST酯的优势的一般观点一致。结果提示AST可能对雨水杨细胞Chl - a光氧化具有保护作用。虾青素、叶绿素、单线态氧、光降解、雨红球菌。B19РМ-010)和俄罗斯基础研究基金会(项目编号:19-54-04003)。
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引用次数: 0
Screening of Sugar Beet Regenerants for the Heavy Metal Resistance MTP4 Gene 甜菜抗重金属MTP4基因再生剂的筛选
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2021-01-01 DOI: 10.21519/0234-2758-2021-37-4-14-19
N. R. Mikheeva, A. Nalbandyan, N. Cherkasova
The MTP4 (Metal Tolerance Protein 4) gene, which controls the resistance of sugar beet plants to heavy metals and is located on the 3rd chromosome has been studied. Micro clones grown in vitro with lethal Cd doses were used as explants. For PCR, specific primers MTP4A F/R and MTP4B F/R, covering the 2nd, 3rd and 4th exons and introns between them in the MTP4 gene, were used. Samples with resistance to heavy metals (in particular, Cd) contained some nucleotide changes in the 4th exon resulting in amino acid substitutions in the polypeptide chain. Based on the results of the bioinformatics analysis, it can be assumed with a high probability that the resistance of the studied breeding materials to heavy metals arose due to the presence of certain polymorphisms in the analyzed sugar beet gene. Geneious Prime software as a tool for the MTP4 gene sequence analysis will probably allow the in vitro selection of resistant forms for the subsequent use in the breeding scheme. Key words: sugar beet, МТР genes, genetic polymorphism, PCR, molecular genetic markers, breeding, DNA
研究了位于甜菜第3染色体上控制甜菜对重金属抗性的MTP4 (Metal Tolerance Protein 4)基因。以致死剂量Cd培养的微无性系为外植体。PCR采用特异性引物MTP4A F/R和MTP4B F/R,分别覆盖MTP4基因的第2、3、4外显子和内含子。对重金属(特别是Cd)具有抗性的样品在第4外显子上含有一些核苷酸变化,导致多肽链上的氨基酸取代。根据生物信息学分析的结果,我们可以很有可能认为所研究的育种材料对重金属的抗性是由于所分析的甜菜基因中存在一定的多态性。genous Prime软件作为MTP4基因序列分析的工具,可能允许在体外选择抗性形式,以便随后在育种方案中使用。关键词:甜菜,МТР基因,遗传多态性,PCR,分子遗传标记,育种,DNA
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引用次数: 2
Natural Stilbene Polyphenols as Yarrowia lipolytica Cell Cytoprotectors at Heat Stress 天然二苯乙烯多酚在热应激下对脂性耶氏杆菌细胞的保护作用
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2021-01-01 DOI: 10.21519/0234-2758-2021-37-6-14-24
N. Gessler, E. Isakova, Y. Deryabina
Using the extremophilic yeast of Yarrowia lipolytica, a new model has been proposed to study the protective properties of stilbene polyphenols, namely resveratrol and pinosylvin, under heat shock. It was shown that a short-term thermal exposure of yeast cells (55 C, 25 min) led to a 40% decrease in the colony-forming ability of the population, a fivefold decrease in the respiration rate, and a growth of cyanide resistance and catalase activity, which indicated the adaptive yeast response to heat stress. Under these conditions, natural biologically active stilbenes, resveratrol and pinosylvin, at a concentration of 10 μM each increased yeast survival by 28% and 13%, respectively. In heat shock, resveratrol additionally raised catalase activity, while pinosylvin increased the cell respiration rate and decreased cyanide resistance and catalase activity. The results obtained indicate that resveratrol acts as a mild pro-oxidant inducing antioxidant protection during the adaptive response of the yeast to heat shock. Unlike resveratrol, pinosylvin increases cell survival stabilizing mitochondrial function and preserving the ATP-generating component of respiration. Yarrowia lipolytica yeast, polyphenols, stilbenoids, resveratrol, pinosylvin, cellular respiratory activity, heat shock, superoxide dismutase, catalase
利用嗜极性脂性耶氏菌酵母,提出了一种新的模型来研究二苯乙烯多酚(白藜芦醇和木酚素)在热休克下的保护作用。结果表明,酵母细胞短期热暴露(55℃,25 min)导致群体集落形成能力下降40%,呼吸速率下降5倍,抗氰化物能力和过氧化氢酶活性增加,表明酵母对热胁迫有适应性反应。在此条件下,天然生物活性二苯乙烯、白藜芦醇和pinosylvin浓度为10 μM时,酵母存活率分别提高28%和13%。在热休克中,白藜芦醇增加了过氧化氢酶活性,而木酚素增加了细胞呼吸速率,降低了抗氰性和过氧化氢酶活性。结果表明,白藜芦醇作为一种温和的促氧化剂,在酵母对热休克的适应性反应中具有抗氧化保护作用。与白藜芦醇不同,pinosylvin增加细胞存活,稳定线粒体功能并保留呼吸的atp生成成分。酵母脂解耶氏菌,多酚,stilbenoids,白藜芦醇,木酚素,细胞呼吸活性,热休克,超氧化物歧化酶,过氧化氢酶
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引用次数: 0
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