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A technique for the masses: single-cell analysis using mass cytometry. 面向大众的技术:利用质谱仪进行单细胞分析。
IF 2.7 4区 工程技术 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-02-01 Epub Date: 2024-01-08 DOI: 10.2144/btn-2023-0121
Beatrice Bowlby

Mass cytometry, a technique that bridges the gap between flow cytometry and mass spectrometry, reveals how immune cell distribution differs in disease states, such as in the peripheral blood of coronary artery disease patients and the lesion microenvironment of endometriosis. [Formula: see text].

质谱技术是流式细胞仪和质谱仪之间的桥梁,它揭示了免疫细胞在疾病状态下的分布差异,例如在冠状动脉疾病患者的外周血和子宫内膜异位症的病灶微环境中。[公式:见正文]。
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引用次数: 0
Application of a 3D bioprinter: jet technology for 'biopatch' development using cells on hydrogel supports. 三维生物打印机的应用:在水凝胶支持物上使用细胞进行 "生物补丁 "开发的喷射技术。
IF 2.7 4区 工程技术 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-02-01 Epub Date: 2023-12-12 DOI: 10.2144/btn-2023-0052
Derek C DeMel, Grayson A Wagner, Jamie A Maresca, John P Geibel

Additive manufacturing (3D printing) has been deployed across multiple platforms to fabricate bioengineered tissues. We demonstrate the use of a Thermal Inkjet Pipette System (TIPS) for targeted delivery of cells onto manufactured substrates to design bio-bandages. Two cell lines - HEK 293 (kidney) and K7M2 wt (bone) - were applied using TIPS. We demonstrate a novel means for targeted cell delivery to a hydrogel support structure. These cell/support constructs (bio-bandages) had a high viability for survival and growth over extended periods. Combining a flexible biosupport with application of cells via TIPS printing now for the first time allows for custom cell substrate constructs with various densities to be deployed for regenerative medicine applications.

增材制造(3D 打印)已在多个平台上应用,用于制造生物工程组织。我们展示了如何使用热喷墨移液管系统(TIPS)将细胞定向输送到制造好的基底上,以设计生物绷带。两种细胞系--HEK 293(肾)和 K7M2 wt(骨)--都应用了 TIPS。我们展示了一种将细胞定向输送到水凝胶支撑结构的新方法。这些细胞/支撑结构(生物绷带)具有很高的存活率,可长期存活和生长。通过 TIPS 打印技术将柔性生物支架与细胞应用相结合,现在首次实现了将各种密度的定制细胞基底构建物用于再生医学应用。
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引用次数: 0
Comparison of colorimetric, spectroscopic and electrochemical techniques for quantification of hydrogen sulfide. 硫化氢定量的比色、光谱和电化学技术比较。
IF 2.7 4区 工程技术 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-02-01 Epub Date: 2023-12-07 DOI: 10.2144/btn-2023-0075
Susmit Mhatre, Anjali Rai, Hatim Ali, Akash Patil, Neetu Singh, Richa Verma, John Auden, Cole Chandler, Alekha Dash, Catherine Opere, Somnath Singh

Background: Hydrogen sulfide (H2S), an endogenous gasotransmitter, has potential applications in several conditions. However, its quantification in simulated physiological solutions is a major challenge due to its gaseous nature and other physicochemical properties. Aim: This study was designed to compare four commonly used H2S detection and quantification methods in aqueous solutions. Methods: The four techniques compared were one colorimetric, one chromatographic and two electrochemical methods. Results: Colorimetric and chromatographic methods quantified H2S in millimolar and micromole ranges, respectively. The electrochemical methods quantified H2S in the nanomole and picomole ranges and were less time-consuming. Conclusion: The H2S quantification method should be selected based on the specific requirements of a research project in terms of sensitivity, response time and cost-effectiveness.

背景:硫化氢(H2S)是一种内源性气体变送器,在多种条件下具有潜在的应用前景。然而,由于其气体性质和其他物理化学性质,其在模拟生理溶液中的量化是一个主要挑战。目的:比较水溶液中常用的四种硫化氢检测和定量方法。方法:采用一种比色法、一种色谱法和两种电化学方法进行比较。结果:比色法和色谱法分别在毫摩尔和微摩尔范围内定量H2S。电化学方法在纳米和皮摩尔范围内定量H2S,耗时短。结论:应根据研究项目的具体要求,在灵敏度、反应时间和成本效益等方面选择H2S定量方法。
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引用次数: 0
The environmental impact of AI in the lab: a double-edged sword? 实验室人工智能对环境的影响:一把双刃剑?
IF 2.2 4区 工程技术 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-01-01 Epub Date: 2024-07-31 DOI: 10.1080/07366205.2024.2376459
Annie Coulson

Computational tools, particularly AI, are becoming more ubiquitous in scientific research; but what impact do they have on the environment?[Formula: see text].

计算工具,尤其是人工智能,在科学研究中越来越无处不在;但它们对环境有什么影响?
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引用次数: 0
Cancer's sweet spot: techniques to harness saccharides in tumor biology. 癌症的甜蜜点:在肿瘤生物学中利用糖类的技术。
IF 2.7 4区 工程技术 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-01-01 Epub Date: 2023-12-04 DOI: 10.2144/btn-2023-0110
Jade Parker

All of the cells in our bodies are enveloped in sugar, this sweet coating plays a particularly interesting and crucial role in tumor biology. Here, we review the techniques being used to detect and exploit cancer's sweet spot. including click chemistry, glycoproteomic profiling and bioorthogonal chemistry.

我们体内的所有细胞都被糖包裹着,这种甜的包裹在肿瘤生物学中起着特别有趣和关键的作用。在这里,我们回顾了用于检测和利用癌症甜蜜点的技术。包括点击化学,糖蛋白组学分析和生物正交化学。
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引用次数: 0
Transitioning from Triton X-100 to Tergitol 15-S-9: impacts on diagnostic assays using viral PCR sample solution. 从 Triton X-100 过渡到 Tergitol 15-S-9:对使用病毒 PCR 样品溶液进行诊断测定的影响。
IF 2.2 4区 工程技术 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-01-01 Epub Date: 2024-05-05 DOI: 10.1080/07366205.2024.2342172
Azul Zorzoli, Alasdair MacLean, Scott Nicholson, Alison Daniels, Stephen Hughes, Susan Bennet-Slater, Christine Tait-Burkard, Noha El Sakka, Rory Gunson, Kate Templeton

In 2019, the European Union banned Triton X-100, a detergent widely used in laboratory diagnostics, including the Viral PCR Sample Solution (VPSS), and urged manufacturers to find environmentally sustainable alternatives. Tergitol 15-S-9 (VPSS2) has been proposed as an alternative surfactant. This multicenter study evaluated the effectiveness of VPSS2, a Tergitol-based viral solution, as a replacement for VPSS. Our results show the equivalent performance of VPSS2 to VPSS for nucleic acid extraction and viral stability over time at different temperatures. The new VPSS formulation was also tested against external quality assurance panels and clinical samples. The results of this work support adopting this modified viral PCR sample solution to replace Triton X-100-containing viral transport solutions.

2019 年,欧盟禁用了广泛用于实验室诊断(包括病毒 PCR 样品溶液 (VPSS))的洗涤剂 Triton X-100,并敦促制造商寻找环境可持续的替代品。Tergitol 15-S-9(VPSS2)被提议作为一种替代表面活性剂。这项多中心研究评估了基于 Tergitol 的病毒溶液 VPSS2 作为 VPSS 替代品的有效性。我们的结果表明,VPSS2 与 VPSS 在不同温度下的核酸提取和病毒稳定性方面性能相当。新的 VPSS 配方还通过了外部质量保证小组和临床样本的测试。这项工作的结果支持采用这种改良的病毒 PCR 样品溶液来替代含有 Triton X-100 的病毒运输溶液。
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引用次数: 0
Adipocyte ABCA1 expression analysis using flow cytometry. 使用流式细胞仪分析脂肪细胞 ABCA1 的表达。
IF 2.2 4区 工程技术 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-01-01 Epub Date: 2024-07-17 DOI: 10.1080/07366205.2024.2376466
Sakshi Shukla, Ashutosh Bansal, Sandeep Aggarwal, Archna Singh

Adipocyte characterization and assessing membrane proteins using flow cytometry has been proven to be challenging as adipocytes are fragile, especially in subjects with high BMI. We overcame these challenges through a protocol optimizing tissue digestion time by reducing intermediate steps to minimize adipocyte friction and breakage. We avoided requirement for specialized instrument configuration and used a modified gating strategy to prevent inclusion of lipid droplets during analysis. Up to 90% of the cell population were available in the gating area. We checked the expression level of ABCA1, a membrane protein reaffirming adipocyte selection. In summary, this protocol requires lesser tissue sample improving feasibility and cost efficiency. Thus, our flow cytometry method is an improvement for studying adipocyte membrane characteristics.

使用流式细胞术鉴定脂肪细胞特征和评估膜蛋白已被证明具有挑战性,因为脂肪细胞很脆弱,尤其是在高体重指数的受试者中。我们通过减少中间步骤来优化组织消化时间,最大程度地减少脂肪细胞的摩擦和破损,从而克服了这些挑战。我们避免了对专业仪器配置的要求,并采用了改进的门控策略,以防止在分析过程中加入脂滴。多达 90% 的细胞群可进入选通区域。我们检测了 ABCA1 的表达水平,这是一种膜蛋白,再次证实了脂肪细胞的选择。总之,该方案所需的组织样本较少,提高了可行性和成本效益。因此,我们的流式细胞仪方法是研究脂肪细胞膜特征的一种改进。
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引用次数: 0
Dual-mode detection of glucose based on pistol-like DNAzyme-mediated exonuclease-assisted signal cycle. 基于手枪式 DNA 酶介导的外切酶辅助信号循环的葡萄糖双模式检测。
IF 2.2 4区 工程技术 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-01-01 Epub Date: 2024-08-05 DOI: 10.1080/07366205.2024.2381403
Huiying Lu, Xiaofeng Wang

Detecting glucose accurately and sensitively from clinical samples like tears and saliva is still difficult. We have created a sensor that can detect glucose with high sensitivity and accuracy by combining the use of glucose oxidase (GOx) to catalyze glucose, a pistol-like DNAzyme (PLDz) to transform the signal, gold nanoparticles (AuNPs) to enhance the optical properties and the exonuclease-III (Exo-III) to amplify the signal. As a result, the proposed method exhibits a low detection limit of 7.5 pM and a wide detection range covering seven orders of magnitude. The suggested dual-mode strategy provides a sensitive, precise and specific detection method for glucose. Another advantage is that the dual-mode technique significantly improves the precision and consistency of the measurements, demonstrating its immense potential for use in biomedical research and clinical diagnostics.

要从泪液和唾液等临床样本中准确而灵敏地检测葡萄糖仍然很困难。我们利用葡萄糖氧化酶(GOx)催化葡萄糖、手枪样 DNA 酶(PLDz)转换信号、金纳米粒子(AuNPs)增强光学特性以及外切酶-III(Exo-III)放大信号,创造出了一种能够高灵敏度、高准确度检测葡萄糖的传感器。因此,该方法的检测限低至 7.5 pM,检测范围广达七个数量级。建议的双模式策略提供了一种灵敏、精确和特异的葡萄糖检测方法。另一个优点是,双模式技术大大提高了测量的精确度和一致性,显示了其在生物医学研究和临床诊断中的巨大应用潜力。
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引用次数: 0
The dynamic duo: cryo-EM teams up with machine learning to visualize biomolecules in motion. 动态二重奏:低温电子显微镜与机器学习相结合,实现生物分子运动的可视化。
IF 2.2 4区 工程技术 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-01-01 Epub Date: 2024-06-12 DOI: 10.1080/07366205.2024.2355771
Beatrice Bowlby

Cryo-EM has been a key technique in our understanding of biomolecular structures. Now, machine learning techniques are being used to put these structures in motion, revealing dynamic interactions and processes happening on a molecular and cellular level.[Formula: see text].

低温电子显微镜一直是我们了解生物分子结构的关键技术。现在,机器学习技术正被用于使这些结构运动起来,揭示分子和细胞水平上发生的动态相互作用和过程。
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引用次数: 0
Artificial intelligence: help or hindrance in solving the reproducibility crisis? 人工智能:帮助还是阻碍解决可重复性危机?
IF 2.2 4区 工程技术 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-01-01 Epub Date: 2024-06-20 DOI: 10.1080/07366205.2024.2355776
Jennifer Straiton

Science is in the midst of a reproducibility crisis and the integration of artificial intelligence into scientific research has only compounded the problem; yet could the technology hold the solution to its own problems?[Formula: see text].

科学正处于可重复性危机之中,人工智能融入科学研究只会使问题更加复杂;然而,这项技术能否解决自身的问题?
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BioTechniques
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