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AhR signaling pathways and regulatory functions AhR信号通路及其调控功能
Pub Date : 2018-12-01 DOI: 10.1016/j.biopen.2018.05.001
Lucie Larigot , Ludmila Juricek , Julien Dairou , Xavier Coumoul

Animals and humans are exposed each day to a multitude of chemicals in the air, water and food. They have developed a battery of enzymes and transporters that facilitate the biotransformation and elimination of these compounds. Moreover, a majority of these enzymes and transporters are inducible due to the activation of xenobiotic receptors which act as transcription factors for the regulation of their target genes (such as xenobiotic metabolizing enzymes, see below §4 for the AhR). These receptors include several members of the nuclear/steroid receptor family (CAR for Constitutive Androstane Receptor, PXR for Pregnane X Receptor) but also the Aryl hydrocarbon Receptor or AhR, a member of the bHLH-PAS family (basic Helix-Loop-Helix - Period/ARNT/Single minded). In addition to the regulation of xenobiotic metabolism, numerous alternative functions have been characterized for the AhR since its discovery. These alternative functions will be described in this review along with its endogenous functions as revealed by experiments performed on knock-out animals.

动物和人类每天都暴露在空气、水和食物中的大量化学物质中。他们已经开发出一系列的酶和转运体来促进这些化合物的生物转化和消除。此外,这些酶和转运体中的大多数是可诱导的,这是由于异种受体的激活,这些受体作为转录因子调节其靶基因(如异种代谢酶,参见下文§4的AhR)。这些受体包括核/类固醇受体家族的几个成员(CAR为组成型雄烷受体,PXR为孕烷X受体),以及芳烃受体或AhR, bHLH-PAS家族的成员(基本螺旋-环-螺旋-周期/ARNT/Single - minded)。除了调节异种代谢外,自发现以来,AhR还具有许多其他功能。这些替代功能将在这篇综述中描述,以及在敲除动物身上进行的实验所揭示的内源性功能。
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引用次数: 320
Retroviral nucleocapsid proteins and DNA strand transfers 逆转录病毒核衣壳蛋白和DNA链转移
Pub Date : 2018-12-01 DOI: 10.1016/j.biopen.2018.07.001
Brigitte René, Olivier Mauffret, Philippe Fossé

An infectious retroviral particle contains 1000–1500 molecules of the nucleocapsid protein (NC) that cover the diploid RNA genome. NC is a small zinc finger protein that possesses nucleic acid chaperone activity that enables NC to rearrange DNA and RNA molecules into the most thermodynamically stable structures usually those containing the maximum number of base pairs. Thanks to the chaperone activity, NC plays an essential role in reverse transcription of the retroviral genome by facilitating the strand transfer reactions of this process. In addition, these reactions are involved in recombination events that can generate multiple drug resistance mutations in the presence of anti-HIV-1 drugs. The strand transfer reactions rely on base pairing of folded DNA/RNA structures. The molecular mechanisms responsible for NC-mediated strand transfer reactions are presented and discussed in this review. Antiretroviral strategies targeting the NC-mediated strand transfer events are also discussed.

传染性逆转录病毒颗粒含有1000-1500个覆盖二倍体RNA基因组的核衣壳蛋白(NC)分子。NC是一种小的锌指蛋白,具有核酸伴侣活性,使NC能够将DNA和RNA分子重新排列成最热力学稳定的结构,通常是那些含有最多碱基对的结构。由于伴侣蛋白的活性,NC通过促进逆转录病毒基因组的链转移反应,在逆转录病毒基因组的逆转录过程中起着至关重要的作用。此外,这些反应还涉及在抗hiv -1药物存在的情况下产生多重耐药突变的重组事件。链转移反应依赖于折叠DNA/RNA结构的碱基配对。本文介绍并讨论了nc介导的链转移反应的分子机制。还讨论了针对nc介导的链转移事件的抗逆转录病毒策略。
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引用次数: 8
Vanadate inhibits transcription of the rat insulin receptor gene via a proximal sequence of the 5′flanking region 钒酸盐通过5 '侧区近端序列抑制大鼠胰岛素受体基因的转录
Pub Date : 2018-12-01 DOI: 10.1016/j.biopen.2018.09.001
Sylvie Bortoli , Martine Collinet , Bernard Desbuquois

Vanadate, a protein tyrosine phosphatase inhibitor which elicits insulin-like effects, has previously been shown to inhibit expression of the insulin receptor gene at the transcriptional level in rat hepatoma cells. In an attempt to identify the DNA sequence and transcription factors potentially involved in this effect, a fragment of the proximal 5′flanking region of the IR gene (−1143/−252 upstream the ATG codon) has been cloned and functionally characterized. RNase protection allowed the identification of several transcription start sites in the conserved region of the gene, among which two major sites at −455 and −396. Upon fusion to the luciferase gene and transient transfection into hepatoma cells, the −1143/−252 fragment showed promoter activity. This was unaffected by deletion of the −1143/−761 sequence, but markedly decreased (90%) by additional deletion of the −760/−465 sequence. Treatment of hepatoma cells with vanadate led to a dose-dependent decrease in promoter activity of the 1143/−252, −760/−252 and −464/−252 constructs (change relative to untreated cells, 40, 55 and 23% at 125 μM, and 70, 85 and 62% at 250 μM, respectively). These data suggest that although the entire DNA sequence upstream the transcription start sites is probably involved in vanadate-induced inhibition, the short sequence downstream of position −464 and is sufficient for inhibition. Potential targets of vanadate are the transcription factors FoxO1 and HMGA1, two downstream targets of the insulin signaling pathway which have been shown to mediate the inhibitory effect of insulin on IR gene expression.

钒酸盐是一种蛋白酪氨酸磷酸酶抑制剂,具有胰岛素样作用,先前已被证明在大鼠肝癌细胞的转录水平上抑制胰岛素受体基因的表达。为了鉴定可能参与这种效应的DNA序列和转录因子,研究人员克隆了IR基因近端5 '侧翼区域(ATG密码子上游- 1143/ - 252)的一个片段并对其进行了功能表征。RNase保护允许在基因的保守区域鉴定几个转录起始位点,其中两个主要位点在- 455和- 396。在与荧光素酶基因融合并瞬间转染到肝癌细胞后,- 1143/ - 252片段显示出启动子活性。该结果不受- 1143/ - 761序列缺失的影响,但通过额外删除- 760/ - 465序列显著降低(90%)。用钒酸盐处理肝癌细胞导致1143/ - 252、- 760/ - 252和- 464/ - 252结构的启动子活性呈剂量依赖性下降(相对于未处理的细胞,125 μM下的变化分别为40%、55%和23%,250 μM下的变化为70%、85%和62%)。这些数据表明,尽管转录起始位点上游的整个DNA序列可能参与了钒酸盐诱导的抑制,但−464位下游的短序列足以抑制。钒酸盐的潜在靶点是转录因子FoxO1和HMGA1,这两个胰岛素信号通路的下游靶点已被证明介导胰岛素对IR基因表达的抑制作用。
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引用次数: 1
Acknowledgement to Reviewers 审稿人致谢
Pub Date : 2018-12-01 DOI: 10.1016/j.biopen.2018.12.001
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引用次数: 0
Isoprostanes as markers for muscle aging in older athletes 异前列腺素作为老年运动员肌肉老化的标志
Pub Date : 2018-06-01 DOI: 10.1016/j.biopen.2017.12.001
Claire Vinel , Ophélie Pereira , Aude Dupuy , Justine Bertrand-Michel , Dalila Laoudj-Chenivesse , Yves Rolland , Daniel Rivière , Philippe Valet , Cédric Dray , Fabien Pillard

Introduction

Production of isoprostanes (IsoPs) is enhanced after acute, intense, and prolonged exercise, in untrained subjects. This effect is greater in older subjects. The present study aims to delineate the profile of acute-exercise-induced IsoPs levels in young and older endurance-trained subjects.

Methods

All included subjects were male, young (n = 6; 29 yrs ± 5.7) or older (n = 6; 63.7 yrs ± 2.3), and competitors. The kinetics of F2-IsoPs in blood-sera was assessed at rest, for the maximal aerobic exercise power (MAP) corresponding to the cardio-respiratory fitness index and after a 30-min recovery period.

Results

No significant time effect on F2-IsoPs kinetics was identified in young subjects. However, in older athletes, F2-IsoPs blood-concentrations at the MAP were higher than at rest, whereas these blood-concentrations did not differ between rest and after the 30-min recovery period.

Conclusion

Because plasma glutathione (GSH) promotes the formation of some F2-IsoPs, we suggest that the surprising decrease in F2-IsoPs levels in older subjects would be caused by decreased GSH under major ROS production in older subjects. We argue that the assessment F2-IsoPs in plasma as biomarkers of the aging process should be challenged by exercise to improve the assessment of the functional response against reactive oxygen species in older subjects.

在未经训练的受试者中,异前列腺素(IsoPs)的产生在急性、高强度和长时间运动后增强。这种影响在年龄较大的受试者中更为明显。本研究旨在描述青年和老年耐力训练对象的急性运动诱导的IsoPs水平。方法所有受试者均为男性,年轻(n = 6;29岁±5.7岁)或以上(n = 6;(63.7岁±2.3岁);在静止状态、心肺适能指数对应的最大有氧运动功率(MAP)和恢复期30 min后,评估血清F2-IsoPs的动力学。结果青年受试者F2-IsoPs动力学无明显时间效应。然而,在老年运动员中,MAP时F2-IsoPs血药浓度高于休息时,而这些血药浓度在休息和30分钟恢复期后没有差异。结论血浆谷胱甘肽(GSH)促进了某些F2-IsoPs的形成,我们认为老年人F2-IsoPs水平的惊人下降可能是由于老年人主要ROS生成下的谷胱甘肽(GSH)下降所致。我们认为,评估血浆中F2-IsoPs作为衰老过程的生物标志物应该通过运动来挑战,以改善老年人对活性氧的功能反应的评估。
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引用次数: 1
Glycan binding profile of a fucolectin-related protein (FRP) encoded by the SP2159 gene of Streptococcus pneumoniae 肺炎链球菌SP2159基因编码的岩藻胶蛋白相关蛋白(FRP)的聚糖结合谱
Pub Date : 2018-06-01 DOI: 10.1016/j.biopen.2017.12.002
Albert M. Wu , Tanuja Singh , Yung Liang Chen , Kimberly M. Anderson , Su Chen Li , Yu Teh Li

The recombinant fucolectin-related protein (FRP) of unknown function, encoded by the SP2159 gene of Streptococcus pneumoniae, was expressed in E. coli. In this study, its glycan-recognition epitopes and their binding potencies were examined by enzyme-linked lectinosorbent and inhibition assays. The results indicate that FRP reacted strongly with human blood group ABH and l-Fucα1→2-active glycotopes and in their polyvalent (super) forms. When expressed by mass relative potency, the binding affinities of FRP to poly-l-Fucα1→glycotopes were about 5.0 × 105 folds higher than that of the mono-l-Fucα1→glycotope form. This unique binding property of FRP can be used as a special tool to differentiate complex forms of l-Fucα1→2 and other forms of glycotopes.

在大肠杆菌中表达了由肺炎链球菌SP2159基因编码的功能未知的重组岩藻集素相关蛋白(FRP)。在本研究中,通过酶联凝集素吸附和抑制实验检测了其聚糖识别表位及其结合能力。结果表明,FRP与人血型ABH和l-Fucα1→2-活性糖基发生强烈反应,并以多价(超)形式发生反应。当用质量相对效价表示时,FRP与聚l- fuc α1→糖基的结合亲和力比单l- fuc α1→糖基的结合亲和力高5.0 × 105倍。FRP的这种独特的结合特性可以作为区分l-Fucα1→2复合物形式和其他形式的糖基的特殊工具。
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引用次数: 2
Herbal genomics as tools for dissecting new metabolic pathways of unexplored medicinal plants and drug discovery 草药基因组学作为剖析未开发药用植物新代谢途径和药物发现的工具
Pub Date : 2018-06-01 DOI: 10.1016/j.biopen.2017.12.003
Prasanta Chakraborty

Herbal drugs, on which 80% of the world's population rely, are relatively safe over conventional drugs. Conventional drugs are costly, have serious side effects and hence over the past few decades researchers have focused on drug discovery from herbal medicines or botanical sources. The majority of new herbal drugs have been generated from secondary metabolites (alkaloids, terpenoids and phenolic compounds) of plant metabolism. Till date, only a small fraction of the vast diversity of plant metabolism has been explored for the production of new medicines and other products. The emergence of new herbal genomics research, medicinal plant genomics consortium, together with advances in other omics information may help for the speedy discovery of previously unknown metabolic pathways and enzymes. This review highlights the importance of genomics research in the discovery of some previously unknown enzymes/pathways which may make significant contributions in plant metabolic biology and may be used for the future discovery of many new pharmaceutical agents.

世界上80%的人口都依赖草药,与传统药物相比,草药相对安全。传统药物价格昂贵,有严重的副作用,因此在过去的几十年里,研究人员一直专注于从草药或植物来源中发现药物。大多数新草药是由植物代谢的次生代谢物(生物碱、萜类和酚类化合物)生成的。迄今为止,在植物代谢的巨大多样性中,只有一小部分被用于开发新药和其他产品。新的草药基因组学研究、药用植物基因组学联盟的出现,以及其他组学信息的进展,可能有助于快速发现以前未知的代谢途径和酶。这篇综述强调了基因组学研究在发现一些以前未知的酶/途径中的重要性,这些酶/途径可能在植物代谢生物学中做出重大贡献,并可能用于未来发现许多新的药物制剂。
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引用次数: 53
Lack of current observed in HEK293 cells expressing NALCN channels 在表达NALCN通道的HEK293细胞中观察到缺乏电流
Pub Date : 2018-06-01 DOI: 10.1016/j.biopen.2018.01.001
Jennifer M. Egan, Colleen A. Peterson, W. Mark Fry

The sodium leak channel NALCN is poorly understood, but is reported as a Na+-permeable, nonselective cation leak channel which regulates resting membrane potential and electrical excitability. Previous work has indicated that NALCN currents can be stimulated by activation of several G protein coupled receptors, including the M3 muscarinic receptor. We undertook a study using voltage clamp electrophysiology to investigate NALCN currents. We compared currents elicited from untransfected control HEK239 cells in response to M3R agonists muscarine or Oxotremorine M to currents elicited from cells transfected with M3R only or the M3R plus NALCN and cDNA encoding accessory proteins UNC-80 and Src. Currents with similar properties were observed in all three groups of cells in response to muscarine agonists, in similar proportions of cells tested, from all three groups of cells. Our findings do not support previous electrophysiological studies suggesting that heterologously expressed NALCN functions as a Na+ leak channel in HEK293 cells. More research will be required to determine the molecular requirements for successful expression of the NALCN channel.

钠泄漏通道NALCN是一种Na+渗透性的非选择性阳离子泄漏通道,可调节静息膜电位和电兴奋性。先前的研究表明,几种G蛋白偶联受体(包括M3毒蕈碱受体)的激活可以刺激NALCN电流。我们采用电压钳位电生理学研究NALCN电流。我们比较了未转染的对照HEK239细胞对M3R激动剂muscarine或Oxotremorine M产生的电流与仅转染M3R或M3R加NALCN和编码辅助蛋白UNC-80和Src的cDNA的细胞产生的电流。在所有三组细胞对毒蕈碱激动剂的反应中,在所有三组细胞中测试的细胞比例相似,观察到具有相似特性的电流。我们的发现不支持先前的电生理学研究,即异种表达的NALCN在HEK293细胞中作为Na+泄漏通道发挥作用。需要更多的研究来确定NALCN通道成功表达的分子要求。
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引用次数: 5
Chemical composition analysis and in vitro biological activities of ten essential oils in human skin cells 十种精油在人体皮肤细胞中的化学成分分析及体外生物活性
Pub Date : 2017-12-01 DOI: 10.1016/j.biopen.2017.04.001
Xuesheng Han, Cody Beaumont, Nicole Stevens

Research on the biological effects of essential oils on human skin cells is scarce. In the current study, we primarily explored the biological activities of 10 essential oils (nine single and one blend) in a pre-inflamed human dermal fibroblast system that simulated chronic inflammation. We measured levels of proteins critical for inflammation, immune responses, and tissue-remodeling processes. The nine single oils were distilled from Citrus bergamia (bergamot), Coriandrum sativum (cilantro), Pelargonium graveolens (geranium), Helichrysum italicum (helichrysum), Pogostemon cablin (patchouli), Citrus aurantium (petitgrain), Santalum album (sandalwood), Nardostachys jatamansi (spikenard), and Cananga odorata (ylang ylang). The essential oil blend (commercial name Immortelle) is composed of oils from frankincense, Hawaiian sandalwood, lavender, myrrh, helichrysum, and rose. All the studied oils were significantly anti-proliferative against these cells. Furthermore, bergamot, cilantro, and spikenard essential oils primarily inhibited protein molecules related to inflammation, immune responses, and tissue-remodeling processes, suggesting they have anti-inflammatory and wound healing properties. Helichrysum and ylang ylang essential oils, as well as Immortelle primarily inhibited tissue remodeling-related proteins, suggesting a wound healing property. The data are consistent with the results of existing studies examining these oils in other models and suggest that the studied oils may be promising therapeutic candidates. Further research into their biological mechanisms of action is recommended. The differential effects of these essential oils suggest that they exert activities by different mechanisms or pathways, warranting further investigation. The chemical composition of these oils was analyzed using gas chromatography–mass spectrometry.

关于精油对人体皮肤细胞的生物学作用的研究很少。在目前的研究中,我们主要探索了10种精油(9种单一精油和1种混合精油)在模拟慢性炎症的预炎症人类真皮成纤维细胞系统中的生物活性。我们测量了对炎症、免疫反应和组织重塑过程至关重要的蛋白质水平。分别从佛手柑(Citrus bergamia)、芫荽(Coriandrum sativum)、天竺葵(Pelargonium graveolens)、意大利蜡菊(helichryum italicum)、广藿香(Pogostemon cablin)、金柑(Citrus aurantium)、檀香(Santalum album)、香茅(Nardostachys jatamansi)和依兰(Cananga odorata)中提取9种精油。精油混合物(商业名称Immortelle)由乳香、夏威夷檀香、薰衣草、没药、蜡菊和玫瑰的油组成。所研究的所有精油都对这些细胞具有显著的抗增殖作用。此外,佛手柑、香菜和香茅精油主要抑制与炎症、免疫反应和组织重塑过程相关的蛋白质分子,这表明它们具有抗炎和伤口愈合的特性。蜡菊和依兰精油以及永茉莉主要抑制组织重塑相关蛋白,表明其具有伤口愈合特性。这些数据与在其他模型中检验这些油的现有研究结果一致,并表明所研究的油可能是有希望的治疗候选者。建议进一步研究其作用的生物学机制。这些精油的不同作用表明它们通过不同的机制或途径发挥活性,值得进一步研究。采用气相色谱-质谱联用技术对其化学成分进行了分析。
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引用次数: 45
Acknowledgement to Reviewers 审稿人致谢
Pub Date : 2017-12-01 DOI: 10.1016/j.biopen.2017.11.001
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引用次数: 0
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