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Static-gradient NMR imaging for depth-resolved molecular diffusion in amorphous regions in semicrystalline poly(tetrafluoroethylene) film. 半晶聚四氟乙烯薄膜非晶区深度分辨分子扩散的静态梯度核磁共振成像。
Q3 Physics and Astronomy Pub Date : 2025-12-15 eCollection Date: 2025-01-01 DOI: 10.5194/mr-6-317-2025
Natsuki Kawabata, Naoki Asakawa, Teruo Kanki

Understanding spatially heterogeneous molecular diffusion in semicrystalline polymers is critical for elucidating interfacial dynamics in soft materials. This study employs static-gradient nuclear magnetic resonance (NMR) imaging to capture the depth-resolved translational motion of polymer chains in a polytetrafluoroethylene (PTFE) film. By focusing on spin-spin relaxation behavior in amorphous regions near crystalline lamellae, we identify multiple diffusion regimes consistent with Bloch-Torrey analysis. The results reveal that molecular mobility at the substrate interface of PTFE film, immobilized on a glass substrate using epoxy resin, is significantly constrained, likely due to interfacial pinning, while the air-side surface shows signs of enhanced mobility. Our findings highlight the utility of static-gradient field NMR for probing nanoscale dynamical heterogeneity in semicrystalline systems.

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引用次数: 0
Optimized shaped pulses for a 2D single-frequency technique for refocusing (SIFTER). 二维单频重聚焦技术(SIFTER)的优化形状脉冲。
Q3 Physics and Astronomy Pub Date : 2025-12-02 eCollection Date: 2025-01-01 DOI: 10.5194/mr-6-281-2025
Paul A S Trenkler, Burkhard Endeward, Snorri T Sigurdsson, Thomas F Prisner

Fast and accurate arbitrary waveform generators (AWGs) for generating shaped pulses in electron paramagnetic resonance (EPR) have been commercially available for over a decade now. However, while the use of chirp pulses as inversion pulses in pulsed electron double resonance (PELDOR) experiments has become common, their application for generating broadband phase-sensitive transverse magnetization is not widely adopted within the community. Here, we give a detailed insight into optimization procedures and instrumental challenges when using chirped pulses for broadband Fourier transform (FT) detection of electron spin echo signals, particularly the two-dimensional frequency-correlated single-frequency technique for refocusing (SIFTER) experiment. To better understand the influence of chirped pulses on the generation of broadband transverse magnetization, we investigated the phase and amplitude of chirped echoes for different time bandwidth products while varying the number of refocusing pulses, particularly under the influence of B 1 inhomogeneity. Following our optimization procedures, we were able to perform EPR-correlated 2D-SIFTER measurements using rigid nitroxide spin labels on an RNA duplex. Finally, we also demonstrate the first experiments with two novel SIFTER pulse sequences, which could be of interest for the detection of either shorter or longer distances.

用于在电子顺磁共振(EPR)中产生形状脉冲的快速、准确的任意波形发生器(awg)已经商业化了十多年。然而,虽然在脉冲电子双共振(PELDOR)实验中使用啁啾脉冲作为反转脉冲已经很普遍,但它们在产生宽带相敏横向磁化方面的应用并没有被广泛采用。本文详细介绍了利用啁啾脉冲对电子自旋回波信号进行宽带傅里叶变换(FT)检测时的优化程序和仪器挑战,特别是用于重聚焦的二维频率相关单频技术(SIFTER)实验。为了更好地理解啁啾脉冲对宽带横向磁化产生的影响,我们研究了不同时间带宽产物下啁啾回波的相位和幅度,同时改变了重聚焦脉冲的数量,特别是在b1非均匀性的影响下。根据我们的优化程序,我们能够在RNA双工上使用刚性氮氧化物自旋标签进行epr相关的2D-SIFTER测量。最后,我们还演示了两个新型SIFTER脉冲序列的首次实验,这可能对较短或较长的距离的检测感兴趣。
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引用次数: 0
Long-lived states involving a manifold of fluorine-19 spins in fluorinated aliphatic chains. 涉及氟化脂肪链中多种氟-19自旋的长寿命态。
Q3 Physics and Astronomy Pub Date : 2025-11-24 eCollection Date: 2025-01-01 DOI: 10.5194/mr-6-273-2025
Coline Wiame, Sebastiaan Van Dyck, Kirill Sheberstov, Aiky Razanahoera, Geoffrey Bodenhausen

Long-lived states (LLSs) have lifetimes T LLS that exceed longitudinal spin-lattice relaxation times T 1 . In this study, lifetimes T LLS (19F) have been measured in three different achiral per- and polyfluoroalkyl substances (PFAS) containing two or three consecutive CF2 groups. In a static magnetic field B 0 = 11.7 T, the lifetimes T LLS (19F) exceed the longitudinal relaxation times T 1 ( 19 F) by about a factor of 2. The lifetimes T LLS (19F) can be strongly affected by binding to macromolecules, a feature that can be exploited for the screening of fluorinated drugs. Both T LLS (19F) and T 1 (19F) should be longer at lower fields where relaxation due to the chemical shift anisotropy (CSA) of 19F is less effective, which is demonstrated here by running experiments at two fields of 11.7 and 7 T.

长寿命态(LLS)的寿命超过纵向自旋晶格弛豫时间t1。在本研究中,测量了含有两个或三个连续CF2基团的三种不同的单氟烷基和多氟烷基非手性物质(PFAS)的寿命T LLS (19F)。在静态磁场b0 = 11.7 T时,LLS (19F)的寿命约为纵向弛豫时间t1 (19F)的2倍。tlls (19F)的寿命可受到与大分子结合的强烈影响,这一特征可用于氟化药物的筛选。tlls (19F)和t1 (19F)在较低的电场中应该更长,在较低的电场中,由19F的化学位移各向异性(CSA)引起的弛豫效果较差,这里通过在11.7和7t的两个电场中运行实验证明了这一点。
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引用次数: 0
γ effects identify preferentially populated rotamers of CH2F groups: side-chain conformations of fluorinated valine analogues in a protein. γ效应确定优先填充的CH2F基团的旋转体:蛋白质中氟化缬氨酸类似物的侧链构象。
Q3 Physics and Astronomy Pub Date : 2025-11-17 eCollection Date: 2025-01-01 DOI: 10.5194/mr-6-257-2025
Elwy H Abdelkader, Nicholas F Chilton, Ansis Maleckis, Gottfried Otting

Using cell-free protein synthesis, the protein G B1 domain (GB1) was prepared with uniform high-level substitution of valine by (2 S ,3 S )-4-fluorovaline, (2 S ,3 R )-4-fluorovaline or 4,4'-difluorovaline. The 19 F nuclear magnetic resonance (NMR) signals are distributed over a wide spectral range. The fluorinated samples maintain the relative 1 H chemical shifts of the wild-type protein, opening a convenient route to assign the 19 F -NMR signals. For the singly fluorinated residues, the 13 C  chemical shifts of the remaining CH 3 group are subject to a γ effect that depends on the population of different rotameric states of the CH 2 F group and correlates with 3 J FC coupling constants. In addition, the preferentially populated rotamers are reflected by the γ -gauche effect on 19 F chemical shifts, which correlates with 3 J HF couplings. Some of the side-chain conformations determined by these restraints position the fluorine atom near a backbone carbonyl group, a non-intuitive finding that has previously been observed in the high-resolution crystal structure of a different protein. Through-space scalar 19 F - 19 F couplings due to transient fluorine-fluorine contacts are observed between residues 39 and 54.

采用无细胞蛋白合成技术,用(2s, 3s)-4-氟缬氨酸、(2s, 3r)-4-氟缬氨酸或4,4′-二氟缬氨酸统一高水平取代缬氨酸,制备了蛋白GB1结构域(GB1)。19f核磁共振(NMR)信号分布在很宽的光谱范围内。氟化样品保持了野生型蛋白的相对1 H化学位移,为分配19个F -NMR信号开辟了方便的途径。对于单氟化残基,剩余的ch3基团的13c化学位移受γ效应影响,该效应取决于ch2 F基团不同旋转态的居群,并与3j FC耦合常数相关。此外,旋转体的优先填充通过γ -扭扭效应反映在19个F的化学位移上,这与3个jhf耦合有关。由这些约束决定的一些侧链构象将氟原子定位在主羰基附近,这是一个非直觉的发现,以前在不同蛋白质的高分辨率晶体结构中观察到。通过空间标量19f - 19f耦合由于瞬态氟-氟接触的残基39和54之间观察。
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引用次数: 0
Quantifying the carbon footprint of conference travel: the case of NMR meetings. 量化会议旅行的碳足迹:以核磁共振会议为例。
Q3 Physics and Astronomy Pub Date : 2025-11-10 eCollection Date: 2025-01-01 DOI: 10.5194/mr-6-243-2025
Lucky N Kapoor, Natália Ružičková, Predrag Živadinović, Valentin Leitner, Maria Anna Sisak, Cecelia Mweka, Jeroen Dobbelaere, Georgios Katsaros, Paul Schanda

Conference travel contributes to the climate footprint of academic research. Here, we provide a quantitative estimate of the carbon emissions associated with conference attendance by analyzing travel data from participants of 10 international conferences in the field of magnetic resonance, namely EUROMAR, ENC and ICMRBS. We find that attending a EUROMAR conference produces, on average, more than 1 t CO 2 eq . . For the analyzed conferences outside Europe, the corresponding value is about 2-3 times higher, on average, with intercontinental trips amounting to up to 5 t. We compare these conference-related emissions to other activities associated with research and show that conference travel is a substantial portion of the total climate footprint of a researcher in magnetic resonance. We explore several strategies to reduce these emissions, including the impact of selecting conference venues more strategically and the possibility of decentralized conferences. Through a detailed comparison of train versus air travel - accounting for both direct and infrastructure-related emissions - we demonstrate that train travel offers considerable carbon savings. These data may provide a basis for strategic choices of future conferences in the field and for individuals deciding on their conference attendance.

会议旅行增加了学术研究的气候足迹。本文通过分析10个磁共振领域国际会议(EUROMAR、ENC和ICMRBS)参与者的出行数据,对参会相关的碳排放进行了定量估算。我们发现,参加一次EUROMAR会议,平均产生超过1吨二氧化碳当量。对于分析的欧洲以外的会议,相应的值平均高出约2-3倍,洲际旅行高达5吨。我们将这些与会议相关的排放与其他与研究相关的活动进行比较,表明会议旅行是磁共振研究人员总气候足迹的很大一部分。我们探讨了几种减少这些排放的策略,包括更有战略地选择会议场地的影响和分散会议的可能性。通过对火车和航空旅行的详细比较——考虑到直接和基础设施相关的排放——我们证明了火车旅行可以节省大量的碳。这些数据可为今后外地会议的战略选择和个人决定是否出席会议提供依据。
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引用次数: 0
A fast sample shuttle to couple high and low magnetic fields and applications in high-resolution relaxometry. 高、低磁场耦合的快速样品穿梭及其在高分辨率弛豫测量中的应用。
Q3 Physics and Astronomy Pub Date : 2025-09-03 eCollection Date: 2025-01-01 DOI: 10.5194/mr-6-229-2025
Jorge A Villanueva-Garibay, Andreas Tilch, Ana Paula Aguilar Alva, Guillaume Bouvignies, Frank Engelke, Fabien Ferrage, Agnes Glémot, Ulric B le Paige, Giulia Licciardi, Claudio Luchinat, Giacomo Parigi, Philippe Pelupessy, Enrico Ravera, Alessandro Ruda, Lucas Siemons, Olof Stenström, Jean-Max Tyburn

Combining high-resolution high-field nuclear magnetic resonance (NMR) with an evolution of spin systems at a low magnetic field offers many opportunities for the investigation of molecular motions and hyperpolarization and the exploration of field-dependent spin dynamics. Fast and reproducible transfer between high and low fields is required to minimize polarization losses due to longitudinal relaxation. Here, we introduce a new design of a sample shuttle that achieves remarkably high speeds ( v max 27 m s-1). This hybrid pneumatic-mechanical apparatus is compatible with conventional probes at the high-field center. We show applications in water relaxometry in solutions of paramagnetic ions, high-resolution proton relaxometry of a small molecule, and sample shuttling of a solution of a 42 kDa protein. Importantly, this fast sample shuttle (FSS) system is narrow, with a diameter of d = 6 mm for the sample shuttle container based on a standard 5 mm outer diameter glass tube, which should allow near access to the sample for magnetic manipulation at a low field.

高分辨率高场核磁共振(NMR)与低磁场下自旋系统的演化相结合,为分子运动和超极化的研究以及场相关自旋动力学的探索提供了许多机会。为了最大限度地减少由于纵向弛豫造成的极化损失,需要在高场和低场之间进行快速和可重复的转移。在这里,我们介绍了一种新设计的样品穿梭,可以达到非常高的速度(v max ~ 27 m s-1)。这种气动机械混合装置与传统的高场中心探头兼容。我们展示了在顺磁离子溶液中的水弛豫测量,小分子的高分辨率质子弛豫测量以及42 kDa蛋白质溶液的样品穿梭中的应用。重要的是,这种快速样品穿梭(FSS)系统很窄,基于标准外径5mm的玻璃管的样品穿梭容器直径为d = 6 mm,这应该允许在低场下接近样品进行磁操作。
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引用次数: 0
Can label or protein deuteration extend the phase relaxation time of Gd(III) spin labels? 标记或蛋白质氘化是否能延长Gd(III)自旋标记的相弛豫时间?
Q3 Physics and Astronomy Pub Date : 2025-08-12 eCollection Date: 2025-01-01 DOI: 10.5194/mr-6-211-2025
Elena Edinach, Xing Zhang, Chao-Yu Cui, Yin Yang, George Mitrikas, Alexey Bogdanov, Xun-Cheng Su, Daniella Goldfarb
<p><p>Pulse-dipolar electron paramagnetic resonance (PD-EPR) has emerged as an effective tool in structural biology, enabling distance measurements between spin labels attached to biomolecules. The sensitivity and accessible distance range of these measurements are governed by the phase memory time ( <math> <mrow><msub><mi>T</mi> <mi>m</mi></msub> </mrow> </math> ) of the spin labels. Understanding the decoherence mechanisms affecting <math> <mrow><msub><mi>T</mi> <mi>m</mi></msub> </mrow> </math> is crucial for optimizing sample preparation and spin-label design. This study investigates the phase relaxation behavior of two Gd(III) spin-label complexes, Gd-PyMTA and Gd-TPMTA, with various degrees of deuteration. These two complexes have significantly different zero-field-splitting (ZFS) parameters. Hahn echo decay and dynamical decoupling (DD) measurements were performed at W-band (95 GHz) in deuterated solvents (D<sub>2</sub>O <math><mo>/</mo></math> glycerol-d<sub>8</sub>), both for the free complexes and when conjugated to proteins. The impact of temperature, concentration, and field position within the EPR spectrum on <math> <mrow><msub><mi>T</mi> <mi>m</mi></msub> </mrow> </math> was examined. Results indicate that protons within 5 Å of the Gd(III) ion do not contribute to nuclear spin diffusion (NSD), and protein deuteration offers minimal enhancement in <math> <mrow><msub><mi>T</mi> <mi>m</mi></msub> </mrow> </math> . The dominant phase relaxation mechanisms identified at low concentrations were direct spin-lattice relaxation ( <math> <mrow><msub><mi>T</mi> <mn>1</mn></msub> </mrow> </math> ) and transient ZFS (tZFS) fluctuations. Dynamical decoupling (DD) measurements, using the Carr-Purcell sequence with <math><mo>∼</mo></math> 140 refocusing pulses, resolved the presence of two populations: one with a long phase relaxation time, <math> <mrow><msub><mi>T</mi> <mrow><mi>m</mi> <mo>,</mo> <mi>s</mi></mrow> </msub> </mrow> </math> , and the other with a short one, <math> <mrow><msub><mi>T</mi> <mrow><mi>m</mi> <mo>,</mo> <mi>f</mi></mrow> </msub> </mrow> </math> . The dominating mechanism for the slowly relaxing population is direct- <math> <mrow><msub><mi>T</mi> <mn>1</mn></msub> </mrow> </math> . <math> <mrow><msub><mi>T</mi> <mrow><mi>m</mi> <mo>,</mo> <mi>s</mi></mrow> </msub> </mrow> </math> showed no concentration dependence and was longer by a factor of about 2 than <math> <mrow><msub><mi>T</mi> <mi>m</mi></msub> </mrow> </math> for both complexes. We tentatively assign the increase in <math> <mrow><msub><mi>T</mi> <mrow><mi>m</mi> <mo>,</mo> <mi>s</mi></mrow> </msub> </mrow> </math> to full suppression of the residual indirect- <math> <mrow><msub><mi>T</mi> <mn>1</mn></msub> </mrow> </math> -induced spectral diffusion and NSD mechanisms. For the fast-relaxing population, <math> <mrow><msub><mi>T</mi> <mrow><mi>m</mi> <mo>,</mo> <mi>f</mi></mrow> </msub> </mrow> </math> is shorter for Gd-TPMTA; therefore, we assign it to populations
脉冲偶极电子顺磁共振(PD-EPR)已成为结构生物学中的一种有效工具,可以测量附着在生物分子上的自旋标签之间的距离。这些测量的灵敏度和可达距离范围由自旋标签的相记忆时间(T m)决定。了解脱相干机制对优化样品制备和自旋标签设计至关重要。本文研究了两种不同氘化程度的Gd(III)自旋标记配合物Gd- pymta和Gd- tpmta的相弛豫行为。这两种配合物具有明显不同的零场分裂(ZFS)参数。在氘化溶剂(D2O /甘油-d8)中,在w波段(95 GHz)进行了Hahn回波衰减和动态解耦(DD)测量,包括游离配合物和与蛋白质结合的配合物。研究了EPR光谱内温度、浓度和场位对tm的影响。结果表明,Gd(III)离子5 Å内的质子对核自旋扩散(NSD)没有贡献,蛋白质氘化对tm的增强作用最小。在低浓度下发现的主要相弛豫机制是直接自旋-晶格弛豫(t1)和瞬态ZFS (tZFS)波动。动态解耦(DD)测量,使用Carr-Purcell序列与~ 140重聚焦脉冲,解决了两个种群的存在:一个具有长相位松弛时间,T m, s,另一个具有短相位松弛时间,T m, f。缓慢放松人口的主导机制是直接- t1。tm, s没有浓度依赖性,比tm长约2倍。我们暂时将tms的增加归因于残余间接t1诱导的光谱扩散和NSD机制的完全抑制。对于快速放松的人群,T m, f对于Gd-TPMTA来说更短;因此,我们将其分配给tZFS机制占主导地位的种群。由于t1相对较短以及tZFS机制的贡献,蛋白质氘化对t1 m的影响不显著。
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Understanding the decoherence mechanisms affecting &lt;math&gt; &lt;mrow&gt;&lt;msub&gt;&lt;mi&gt;T&lt;/mi&gt; &lt;mi&gt;m&lt;/mi&gt;&lt;/msub&gt; &lt;/mrow&gt; &lt;/math&gt; is crucial for optimizing sample preparation and spin-label design. This study investigates the phase relaxation behavior of two Gd(III) spin-label complexes, Gd-PyMTA and Gd-TPMTA, with various degrees of deuteration. These two complexes have significantly different zero-field-splitting (ZFS) parameters. Hahn echo decay and dynamical decoupling (DD) measurements were performed at W-band (95 GHz) in deuterated solvents (D&lt;sub&gt;2&lt;/sub&gt;O &lt;math&gt;&lt;mo&gt;/&lt;/mo&gt;&lt;/math&gt; glycerol-d&lt;sub&gt;8&lt;/sub&gt;), both for the free complexes and when conjugated to proteins. The impact of temperature, concentration, and field position within the EPR spectrum on &lt;math&gt; &lt;mrow&gt;&lt;msub&gt;&lt;mi&gt;T&lt;/mi&gt; &lt;mi&gt;m&lt;/mi&gt;&lt;/msub&gt; &lt;/mrow&gt; &lt;/math&gt; was examined. Results indicate that protons within 5 Å of the Gd(III) ion do not contribute to nuclear spin diffusion (NSD), and protein deuteration offers minimal enhancement in &lt;math&gt; &lt;mrow&gt;&lt;msub&gt;&lt;mi&gt;T&lt;/mi&gt; &lt;mi&gt;m&lt;/mi&gt;&lt;/msub&gt; &lt;/mrow&gt; &lt;/math&gt; . The dominant phase relaxation mechanisms identified at low concentrations were direct spin-lattice relaxation ( &lt;math&gt; &lt;mrow&gt;&lt;msub&gt;&lt;mi&gt;T&lt;/mi&gt; &lt;mn&gt;1&lt;/mn&gt;&lt;/msub&gt; &lt;/mrow&gt; &lt;/math&gt; ) and transient ZFS (tZFS) fluctuations. Dynamical decoupling (DD) measurements, using the Carr-Purcell sequence with &lt;math&gt;&lt;mo&gt;∼&lt;/mo&gt;&lt;/math&gt; 140 refocusing pulses, resolved the presence of two populations: one with a long phase relaxation time, &lt;math&gt; &lt;mrow&gt;&lt;msub&gt;&lt;mi&gt;T&lt;/mi&gt; &lt;mrow&gt;&lt;mi&gt;m&lt;/mi&gt; &lt;mo&gt;,&lt;/mo&gt; &lt;mi&gt;s&lt;/mi&gt;&lt;/mrow&gt; &lt;/msub&gt; &lt;/mrow&gt; &lt;/math&gt; , and the other with a short one, &lt;math&gt; &lt;mrow&gt;&lt;msub&gt;&lt;mi&gt;T&lt;/mi&gt; &lt;mrow&gt;&lt;mi&gt;m&lt;/mi&gt; &lt;mo&gt;,&lt;/mo&gt; &lt;mi&gt;f&lt;/mi&gt;&lt;/mrow&gt; &lt;/msub&gt; &lt;/mrow&gt; &lt;/math&gt; . The dominating mechanism for the slowly relaxing population is direct- &lt;math&gt; &lt;mrow&gt;&lt;msub&gt;&lt;mi&gt;T&lt;/mi&gt; &lt;mn&gt;1&lt;/mn&gt;&lt;/msub&gt; &lt;/mrow&gt; &lt;/math&gt; . &lt;math&gt; &lt;mrow&gt;&lt;msub&gt;&lt;mi&gt;T&lt;/mi&gt; &lt;mrow&gt;&lt;mi&gt;m&lt;/mi&gt; &lt;mo&gt;,&lt;/mo&gt; &lt;mi&gt;s&lt;/mi&gt;&lt;/mrow&gt; &lt;/msub&gt; &lt;/mrow&gt; &lt;/math&gt; showed no concentration dependence and was longer by a factor of about 2 than &lt;math&gt; &lt;mrow&gt;&lt;msub&gt;&lt;mi&gt;T&lt;/mi&gt; &lt;mi&gt;m&lt;/mi&gt;&lt;/msub&gt; &lt;/mrow&gt; &lt;/math&gt; for both complexes. We tentatively assign the increase in &lt;math&gt; &lt;mrow&gt;&lt;msub&gt;&lt;mi&gt;T&lt;/mi&gt; &lt;mrow&gt;&lt;mi&gt;m&lt;/mi&gt; &lt;mo&gt;,&lt;/mo&gt; &lt;mi&gt;s&lt;/mi&gt;&lt;/mrow&gt; &lt;/msub&gt; &lt;/mrow&gt; &lt;/math&gt; to full suppression of the residual indirect- &lt;math&gt; &lt;mrow&gt;&lt;msub&gt;&lt;mi&gt;T&lt;/mi&gt; &lt;mn&gt;1&lt;/mn&gt;&lt;/msub&gt; &lt;/mrow&gt; &lt;/math&gt; -induced spectral diffusion and NSD mechanisms. For the fast-relaxing population, &lt;math&gt; &lt;mrow&gt;&lt;msub&gt;&lt;mi&gt;T&lt;/mi&gt; &lt;mrow&gt;&lt;mi&gt;m&lt;/mi&gt; &lt;mo&gt;,&lt;/mo&gt; &lt;mi&gt;f&lt;/mi&gt;&lt;/mrow&gt; &lt;/msub&gt; &lt;/mrow&gt; &lt;/math&gt; is shorter for Gd-TPMTA; therefore, we assign it to populations ","PeriodicalId":93333,"journal":{"name":"Magnetic resonance (Gottingen, Germany)","volume":"6 2","pages":"211-228"},"PeriodicalIF":0.0,"publicationDate":"2025-08-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12753153/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145879688","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Automated manufacturing process for sustainable prototyping of nuclear magnetic resonance transceivers. 核磁共振收发器可持续原型的自动化制造过程。
Q3 Physics and Astronomy Pub Date : 2025-07-29 eCollection Date: 2025-01-01 DOI: 10.5194/mr-6-199-2025
Sagar Wadhwa, Nan Wang, Klaus-Martin Reichert, Manuel Butzer, Omar Nassar, Mazin Jouda, Jan G Korvink, Ulrich Gengenbach, Dario Mager, Martin Ungerer

Additive manufacturing has enabled rapid prototyping of components with minimum investment in specific fabrication infrastructure. These tools allow for a fast iteration from design to functional prototypes within days or even hours. Such prototyping technologies exist in many fields, including three-dimensional mechanical components and printed electric circuit boards (PCBs) for electrical connectivity, to mention two. In the case of nuclear magnetic resonance (NMR) spectroscopy, one needs the combination of both fields; we need to fabricate three-dimensional electrically conductive tracks as coils that are wrapped around a sample container. Fabricating such structures is difficult (e.g., six-axis micro-milling) or simply not possible with conventional methods. In this paper, we modified an additive manufacturing method that is based on the extrusion of conductive ink to fast-prototype solenoidal coil designs for NMR. These NMR coils need to be as close to the sample as possible and, by their shape, have specific inductive values. The performance of the designs was first investigated using electromagnetic field simulations and circuit simulations. The coil found to have optimal parameters for NMR was fabricated by extrusion printing, and its performance was tested in a 1.05 T imaging magnet. The objective is to demonstrate reproducible rapid prototyping of complicated designs with high precision that, as a side effect, hardly produces material waste during production.

增材制造能够以最小的特定制造基础设施投资实现组件的快速原型设计。这些工具允许在几天甚至几小时内从设计到功能原型的快速迭代。这种原型技术存在于许多领域,包括用于电气连接的三维机械部件和印刷电路板(pcb),仅举两例。在核磁共振(NMR)光谱学的情况下,需要两个领域的结合;我们需要制造三维导电轨道,像线圈一样缠绕在样品容器上。制造这样的结构是困难的(例如,六轴微铣削),或者根本不可能用传统的方法。在本文中,我们改进了一种基于导电油墨挤压的增材制造方法,以快速原型设计用于核磁共振的电磁线圈。这些核磁共振线圈需要尽可能靠近样品,并且根据它们的形状,具有特定的电感值。首先利用电磁场仿真和电路仿真对设计的性能进行了研究。采用挤压印刷法制备了具有最佳核磁共振参数的线圈,并在1.05 T成像磁体上对其性能进行了测试。目的是展示高精度复杂设计的可重复快速原型,作为副作用,在生产过程中几乎不会产生材料浪费。
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引用次数: 0
Determining large hyperfine interactions of a model flavoprotein in the semiquinone state using pulse EPR (electron paramagnetic resonance) techniques. 利用脉冲电子顺磁共振(EPR)技术测定半醌状态下模型黄蛋白的大超精细相互作用。
Q3 Physics and Astronomy Pub Date : 2025-07-17 eCollection Date: 2025-01-01 DOI: 10.5194/mr-6-183-2025
Jesús I Martínez, Susana Frago, Milagros Medina, Inés García-Rubio
<p><p>Flavoproteins are a versatile class of proteins involved in numerous biological processes, including redox reactions, electron transfer, and signal transduction, often relying on their ability to stabilize different oxidation states of their flavin cofactor. A critical feature of flavin cofactors is their capacity to achieve, within particular protein environments, a semiquinone state that plays a pivotal role in mediating single-electron transfer events and that is key to understanding flavoprotein reactivity. Hyperfine interactions between the unpaired electron and magnetic nuclei in the isoalloxazine ring provide valuable insights into the semiquinone state and its mechanistic roles. This study investigates the hyperfine interactions of isotopically labeled flavodoxin (Fld) with <math> <mrow><msup><mi></mi> <mn>13</mn></msup> <mi>C</mi></mrow> </math> and <math> <mrow><msup><mi></mi> <mn>15</mn></msup> <mi>N</mi></mrow> </math> in specific positions of the flavin mononucleotide (FMN) ring using advanced electron paramagnetic resonance (EPR) techniques. The combination of continuous-wave (CW) EPR at the X-band and ELDOR-detected NMR and HYSCORE at the Q-band revealed a strong and anisotropic hyperfine interaction with the nucleus of <math> <mrow><msup><mi></mi> <mn>13</mn></msup> <mi>C</mi></mrow> </math> at 4a and yielded principal tensor values of 40, <math><mrow><mo>-</mo> <mn>13.5</mn></mrow> </math> , and <math><mrow><mo>-</mo> <mn>9</mn></mrow> </math> MHz, the first of which is associated with the axis perpendicular to the flavin plane. On the other hand, as predicted, the hyperfine interaction with the <math> <mrow><msup><mi></mi> <mn>13</mn></msup> <mi>C</mi></mrow> </math> nucleus in position 2 was minimal. Additionally, HYSCORE experiments on <math> <mrow><msup><mi></mi> <mn>15</mn></msup> <mi>N</mi></mrow> </math> -FMN-labeled Fld provided precise axial hyperfine parameters, i.e., (74, 5.6, 5.6) <math><mrow><mi>MHz</mi></mrow> </math> for <math> <mrow><msup><mi></mi> <mn>15</mn></msup> <mi>N</mi></mrow> </math> (5) and (38, 3.2, 3.2) <math><mrow><mi>MHz</mi></mrow> </math> for <math> <mrow><msup><mi></mi> <mn>15</mn></msup> <mi>N</mi></mrow> </math> (10). These were used to refine quadrupole tensor values for <math> <mrow><msup><mi></mi> <mn>14</mn></msup> <mi>N</mi></mrow> </math> nuclei through isotope-dependent scaling. These results showcase the potential of combining CW EPR, ELDOR-detected NMR, and HYSCORE with isotopic labeling to probe electronic and nuclear interactions in flavoproteins. The new data complete and refine the existing experimental map for the electronic structure of the flavin cofactor and expose systematic divergences between the calculated and experimental values of hyperfine couplings of the atoms that contribute most to the semi-occupied orbital (SOMO). This could indicate a slight but significant shift in the unpaired electron density from position 4a towards the central nitrogens of the pyrazine ri
黄素蛋白是一种多用途的蛋白质,参与许多生物过程,包括氧化还原反应、电子转移和信号转导,通常依赖于它们稳定黄素辅助因子不同氧化状态的能力。黄素辅助因子的一个关键特征是它们能够在特定的蛋白质环境中实现半醌状态,这种状态在介导单电子转移事件中起关键作用,这是理解黄素蛋白反应性的关键。异alloxazine环中未配对电子和磁核之间的超精细相互作用为半醌态及其机制作用提供了有价值的见解。利用先进的电子顺磁共振(EPR)技术研究了同位素标记黄氧还素(Fld)与黄素单核苷酸(FMN)环上特定位置的13c和15n的超精细相互作用。x波段的连续波(CW) EPR和q波段的eldor探测的核磁共振和HYSCORE的组合显示了与13c核在4a处强烈的各向异性超精细相互作用,并产生了40、- 13.5和- 9 MHz的主张量值,其中第一个与垂直于黄素平面的轴相关。另一方面,正如预测的那样,与位置2的13c核的超精细相互作用是最小的。此外,HYSCORE实验在15n - fmn标记的Fld上提供了精确的轴向超精细参数,即15n(5)为(74,5.6,5.6)MHz, 15n(10)为(38,3.2,3.2)MHz。这些被用来细化四极张量值的14个N核通过同位素依赖标度。这些结果显示了将CW EPR、eldor检测NMR和HYSCORE与同位素标记相结合来探测黄蛋白中电子和核相互作用的潜力。新数据完成并完善了黄素辅助因子电子结构的现有实验图,并揭示了对半占据轨道(SOMO)贡献最大的原子的超精细耦合的计算值与实验值之间的系统差异。与计算结果相比,这可能表明未配对电子密度从4a位置向吡嗪环中心氮的轻微但重要的移动。这些结果强调了整合计算和实验方法的重要性,以完善我们对黄素辅助因子反应性的理解。
{"title":"Determining large hyperfine interactions of a model flavoprotein in the semiquinone state using pulse EPR (electron paramagnetic resonance) techniques.","authors":"Jesús I Martínez, Susana Frago, Milagros Medina, Inés García-Rubio","doi":"10.5194/mr-6-183-2025","DOIUrl":"10.5194/mr-6-183-2025","url":null,"abstract":"&lt;p&gt;&lt;p&gt;Flavoproteins are a versatile class of proteins involved in numerous biological processes, including redox reactions, electron transfer, and signal transduction, often relying on their ability to stabilize different oxidation states of their flavin cofactor. A critical feature of flavin cofactors is their capacity to achieve, within particular protein environments, a semiquinone state that plays a pivotal role in mediating single-electron transfer events and that is key to understanding flavoprotein reactivity. Hyperfine interactions between the unpaired electron and magnetic nuclei in the isoalloxazine ring provide valuable insights into the semiquinone state and its mechanistic roles. This study investigates the hyperfine interactions of isotopically labeled flavodoxin (Fld) with &lt;math&gt; &lt;mrow&gt;&lt;msup&gt;&lt;mi&gt;&lt;/mi&gt; &lt;mn&gt;13&lt;/mn&gt;&lt;/msup&gt; &lt;mi&gt;C&lt;/mi&gt;&lt;/mrow&gt; &lt;/math&gt; and &lt;math&gt; &lt;mrow&gt;&lt;msup&gt;&lt;mi&gt;&lt;/mi&gt; &lt;mn&gt;15&lt;/mn&gt;&lt;/msup&gt; &lt;mi&gt;N&lt;/mi&gt;&lt;/mrow&gt; &lt;/math&gt; in specific positions of the flavin mononucleotide (FMN) ring using advanced electron paramagnetic resonance (EPR) techniques. The combination of continuous-wave (CW) EPR at the X-band and ELDOR-detected NMR and HYSCORE at the Q-band revealed a strong and anisotropic hyperfine interaction with the nucleus of &lt;math&gt; &lt;mrow&gt;&lt;msup&gt;&lt;mi&gt;&lt;/mi&gt; &lt;mn&gt;13&lt;/mn&gt;&lt;/msup&gt; &lt;mi&gt;C&lt;/mi&gt;&lt;/mrow&gt; &lt;/math&gt; at 4a and yielded principal tensor values of 40, &lt;math&gt;&lt;mrow&gt;&lt;mo&gt;-&lt;/mo&gt; &lt;mn&gt;13.5&lt;/mn&gt;&lt;/mrow&gt; &lt;/math&gt; , and &lt;math&gt;&lt;mrow&gt;&lt;mo&gt;-&lt;/mo&gt; &lt;mn&gt;9&lt;/mn&gt;&lt;/mrow&gt; &lt;/math&gt; MHz, the first of which is associated with the axis perpendicular to the flavin plane. On the other hand, as predicted, the hyperfine interaction with the &lt;math&gt; &lt;mrow&gt;&lt;msup&gt;&lt;mi&gt;&lt;/mi&gt; &lt;mn&gt;13&lt;/mn&gt;&lt;/msup&gt; &lt;mi&gt;C&lt;/mi&gt;&lt;/mrow&gt; &lt;/math&gt; nucleus in position 2 was minimal. Additionally, HYSCORE experiments on &lt;math&gt; &lt;mrow&gt;&lt;msup&gt;&lt;mi&gt;&lt;/mi&gt; &lt;mn&gt;15&lt;/mn&gt;&lt;/msup&gt; &lt;mi&gt;N&lt;/mi&gt;&lt;/mrow&gt; &lt;/math&gt; -FMN-labeled Fld provided precise axial hyperfine parameters, i.e., (74, 5.6, 5.6) &lt;math&gt;&lt;mrow&gt;&lt;mi&gt;MHz&lt;/mi&gt;&lt;/mrow&gt; &lt;/math&gt; for &lt;math&gt; &lt;mrow&gt;&lt;msup&gt;&lt;mi&gt;&lt;/mi&gt; &lt;mn&gt;15&lt;/mn&gt;&lt;/msup&gt; &lt;mi&gt;N&lt;/mi&gt;&lt;/mrow&gt; &lt;/math&gt; (5) and (38, 3.2, 3.2) &lt;math&gt;&lt;mrow&gt;&lt;mi&gt;MHz&lt;/mi&gt;&lt;/mrow&gt; &lt;/math&gt; for &lt;math&gt; &lt;mrow&gt;&lt;msup&gt;&lt;mi&gt;&lt;/mi&gt; &lt;mn&gt;15&lt;/mn&gt;&lt;/msup&gt; &lt;mi&gt;N&lt;/mi&gt;&lt;/mrow&gt; &lt;/math&gt; (10). These were used to refine quadrupole tensor values for &lt;math&gt; &lt;mrow&gt;&lt;msup&gt;&lt;mi&gt;&lt;/mi&gt; &lt;mn&gt;14&lt;/mn&gt;&lt;/msup&gt; &lt;mi&gt;N&lt;/mi&gt;&lt;/mrow&gt; &lt;/math&gt; nuclei through isotope-dependent scaling. These results showcase the potential of combining CW EPR, ELDOR-detected NMR, and HYSCORE with isotopic labeling to probe electronic and nuclear interactions in flavoproteins. The new data complete and refine the existing experimental map for the electronic structure of the flavin cofactor and expose systematic divergences between the calculated and experimental values of hyperfine couplings of the atoms that contribute most to the semi-occupied orbital (SOMO). This could indicate a slight but significant shift in the unpaired electron density from position 4a towards the central nitrogens of the pyrazine ri","PeriodicalId":93333,"journal":{"name":"Magnetic resonance (Gottingen, Germany)","volume":"6 2","pages":"183-197"},"PeriodicalIF":0.0,"publicationDate":"2025-07-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12326372/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144796350","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Coherence locking in a parallel nuclear magnetic resonance probe defends against gradient field spillover. 平行核磁共振探头的相干锁定防御梯度场溢出。
Q3 Physics and Astronomy Pub Date : 2025-07-17 eCollection Date: 2025-01-01 DOI: 10.5194/mr-6-173-2025
Mengjia He, Neil MacKinnon, Dominique Buyens, Burkhard Luy, Jan G Korvink

The implementation of parallel nuclear magnetic resonance detection aims to enhance measurement throughput in support of high-throughput-screening applications, including, for example, drug discovery. In support of modern pulse sequences and solvent suppression methods, each detection site must have independent pulsed field gradient capabilities. Hereby, a challenge is introduced in which the local gradients applied in parallel detectors introduce field spillover into adjacent channels, leading to spin dephasing and, hence, to signal suppression. This study proposes a compensation scheme employing optimized pulses to achieve coherence locking during gradient pulse periods. The design of coherence-locking pulses utilizes optimal control to address gradient-induced field inhomogeneity. These pulses are applied in a pulsed-gradient spin echo (PGSE) experiment and a parallel heteronuclear single quantum coherence (HSQC) experiment, demonstrating their effectiveness in protecting the desired coherences from gradient field spillover. This compensation scheme presents a valuable solution for magnetic resonance probes equipped with parallel and independently switchable gradient coils.

并行核磁共振检测的实施旨在提高测量吞吐量,以支持高通量筛选应用,包括例如药物发现。为了支持现代脉冲序列和溶剂抑制方法,每个检测位点必须具有独立的脉冲场梯度能力。因此,我们提出了一个挑战,即应用于平行探测器的局部梯度将场溢出引入相邻通道,导致自旋消相,从而导致信号抑制。本研究提出了一种利用优化脉冲实现梯度脉冲周期相干锁定的补偿方案。锁相干脉冲的设计利用最优控制来解决梯度引起的场不均匀性问题。将这些脉冲应用于脉冲梯度自旋回波(PGSE)实验和平行异核单量子相干(HSQC)实验,证明了它们在保护所需相干不受梯度场溢出的影响方面的有效性。该补偿方案为并联和独立可切换梯度线圈的磁共振探头提供了一种有价值的解决方案。
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引用次数: 0
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Magnetic resonance (Gottingen, Germany)
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