Pub Date : 2025-12-15eCollection Date: 2025-01-01DOI: 10.5194/mr-6-317-2025
Natsuki Kawabata, Naoki Asakawa, Teruo Kanki
Understanding spatially heterogeneous molecular diffusion in semicrystalline polymers is critical for elucidating interfacial dynamics in soft materials. This study employs static-gradient nuclear magnetic resonance (NMR) imaging to capture the depth-resolved translational motion of polymer chains in a polytetrafluoroethylene (PTFE) film. By focusing on spin-spin relaxation behavior in amorphous regions near crystalline lamellae, we identify multiple diffusion regimes consistent with Bloch-Torrey analysis. The results reveal that molecular mobility at the substrate interface of PTFE film, immobilized on a glass substrate using epoxy resin, is significantly constrained, likely due to interfacial pinning, while the air-side surface shows signs of enhanced mobility. Our findings highlight the utility of static-gradient field NMR for probing nanoscale dynamical heterogeneity in semicrystalline systems.
{"title":"Static-gradient NMR imaging for depth-resolved molecular diffusion in amorphous regions in semicrystalline poly(tetrafluoroethylene) film.","authors":"Natsuki Kawabata, Naoki Asakawa, Teruo Kanki","doi":"10.5194/mr-6-317-2025","DOIUrl":"https://doi.org/10.5194/mr-6-317-2025","url":null,"abstract":"<p><p>Understanding spatially heterogeneous molecular diffusion in semicrystalline polymers is critical for elucidating interfacial dynamics in soft materials. This study employs static-gradient nuclear magnetic resonance (NMR) imaging to capture the depth-resolved translational motion of polymer chains in a polytetrafluoroethylene (PTFE) film. By focusing on spin-spin relaxation behavior in amorphous regions near crystalline lamellae, we identify multiple diffusion regimes consistent with Bloch-Torrey analysis. The results reveal that molecular mobility at the substrate interface of PTFE film, immobilized on a glass substrate using epoxy resin, is significantly constrained, likely due to interfacial pinning, while the air-side surface shows signs of enhanced mobility. Our findings highlight the utility of static-gradient field NMR for probing nanoscale dynamical heterogeneity in semicrystalline systems.</p>","PeriodicalId":93333,"journal":{"name":"Magnetic resonance (Gottingen, Germany)","volume":"6 2","pages":"317-329"},"PeriodicalIF":0.0,"publicationDate":"2025-12-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12874080/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146144918","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-02eCollection Date: 2025-01-01DOI: 10.5194/mr-6-281-2025
Paul A S Trenkler, Burkhard Endeward, Snorri T Sigurdsson, Thomas F Prisner
Fast and accurate arbitrary waveform generators (AWGs) for generating shaped pulses in electron paramagnetic resonance (EPR) have been commercially available for over a decade now. However, while the use of chirp pulses as inversion pulses in pulsed electron double resonance (PELDOR) experiments has become common, their application for generating broadband phase-sensitive transverse magnetization is not widely adopted within the community. Here, we give a detailed insight into optimization procedures and instrumental challenges when using chirped pulses for broadband Fourier transform (FT) detection of electron spin echo signals, particularly the two-dimensional frequency-correlated single-frequency technique for refocusing (SIFTER) experiment. To better understand the influence of chirped pulses on the generation of broadband transverse magnetization, we investigated the phase and amplitude of chirped echoes for different time bandwidth products while varying the number of refocusing pulses, particularly under the influence of inhomogeneity. Following our optimization procedures, we were able to perform EPR-correlated 2D-SIFTER measurements using rigid nitroxide spin labels on an RNA duplex. Finally, we also demonstrate the first experiments with two novel SIFTER pulse sequences, which could be of interest for the detection of either shorter or longer distances.
{"title":"Optimized shaped pulses for a 2D single-frequency technique for refocusing (SIFTER).","authors":"Paul A S Trenkler, Burkhard Endeward, Snorri T Sigurdsson, Thomas F Prisner","doi":"10.5194/mr-6-281-2025","DOIUrl":"10.5194/mr-6-281-2025","url":null,"abstract":"<p><p>Fast and accurate arbitrary waveform generators (AWGs) for generating shaped pulses in electron paramagnetic resonance (EPR) have been commercially available for over a decade now. However, while the use of chirp pulses as inversion pulses in pulsed electron double resonance (PELDOR) experiments has become common, their application for generating broadband phase-sensitive transverse magnetization is not widely adopted within the community. Here, we give a detailed insight into optimization procedures and instrumental challenges when using chirped pulses for broadband Fourier transform (FT) detection of electron spin echo signals, particularly the two-dimensional frequency-correlated single-frequency technique for refocusing (SIFTER) experiment. To better understand the influence of chirped pulses on the generation of broadband transverse magnetization, we investigated the phase and amplitude of chirped echoes for different time bandwidth products while varying the number of refocusing pulses, particularly under the influence of <math> <mrow><msub><mi>B</mi> <mn>1</mn></msub> </mrow> </math> inhomogeneity. Following our optimization procedures, we were able to perform EPR-correlated 2D-SIFTER measurements using rigid nitroxide spin labels on an RNA duplex. Finally, we also demonstrate the first experiments with two novel SIFTER pulse sequences, which could be of interest for the detection of either shorter or longer distances.</p>","PeriodicalId":93333,"journal":{"name":"Magnetic resonance (Gottingen, Germany)","volume":"6 2","pages":"281-315"},"PeriodicalIF":0.0,"publicationDate":"2025-12-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12765274/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145907469","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Long-lived states (LLSs) have lifetimes that exceed longitudinal spin-lattice relaxation times . In this study, lifetimes (19F) have been measured in three different achiral per- and polyfluoroalkyl substances (PFAS) containing two or three consecutive CF2 groups. In a static magnetic field T, the lifetimes (19F) exceed the longitudinal relaxation times F) by about a factor of 2. The lifetimes (19F) can be strongly affected by binding to macromolecules, a feature that can be exploited for the screening of fluorinated drugs. Both (19F) and (19F) should be longer at lower fields where relaxation due to the chemical shift anisotropy (CSA) of 19F is less effective, which is demonstrated here by running experiments at two fields of 11.7 and 7 T.
{"title":"Long-lived states involving a manifold of fluorine-19 spins in fluorinated aliphatic chains.","authors":"Coline Wiame, Sebastiaan Van Dyck, Kirill Sheberstov, Aiky Razanahoera, Geoffrey Bodenhausen","doi":"10.5194/mr-6-273-2025","DOIUrl":"10.5194/mr-6-273-2025","url":null,"abstract":"<p><p><i>Long-lived states</i> (LLSs) have lifetimes <math> <mrow><msub><mi>T</mi> <mi>LLS</mi></msub> </mrow> </math> that exceed longitudinal spin-lattice relaxation times <math> <mrow><msub><mi>T</mi> <mn>1</mn></msub> </mrow> </math> . In this study, lifetimes <math> <mrow><msub><mi>T</mi> <mi>LLS</mi></msub> </mrow> </math> (<sup>19</sup>F) have been measured in three different achiral per- and polyfluoroalkyl substances (PFAS) containing two or three consecutive CF<sub>2</sub> groups. In a static magnetic field <math> <mrow><msub><mi>B</mi> <mn>0</mn></msub> <mo>=</mo> <mn>11.7</mn></mrow> </math> T, the lifetimes <math> <mrow><msub><mi>T</mi> <mi>LLS</mi></msub> </mrow> </math> (<sup>19</sup>F) exceed the longitudinal relaxation times <math> <mrow><msub><mi>T</mi> <mn>1</mn></msub> <msup><mo>(</mo> <mn>19</mn></msup> </mrow> </math> F) by about a factor of 2. The lifetimes <math> <mrow><msub><mi>T</mi> <mi>LLS</mi></msub> </mrow> </math> (<sup>19</sup>F) can be strongly affected by binding to macromolecules, a feature that can be exploited for the screening of fluorinated drugs. Both <math> <mrow><msub><mi>T</mi> <mi>LLS</mi></msub> </mrow> </math> (<sup>19</sup>F) and <math> <mrow><msub><mi>T</mi> <mn>1</mn></msub> </mrow> </math> (<sup>19</sup>F) should be longer at lower fields where relaxation due to the chemical shift anisotropy (CSA) of <sup>19</sup>F is less effective, which is demonstrated here by running experiments at two fields of 11.7 and 7 T.</p>","PeriodicalId":93333,"journal":{"name":"Magnetic resonance (Gottingen, Germany)","volume":"6 2","pages":"273-279"},"PeriodicalIF":0.0,"publicationDate":"2025-11-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12753152/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145879639","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-11-17eCollection Date: 2025-01-01DOI: 10.5194/mr-6-257-2025
Elwy H Abdelkader, Nicholas F Chilton, Ansis Maleckis, Gottfried Otting
Using cell-free protein synthesis, the protein G B1 domain (GB1) was prepared with uniform high-level substitution of valine by (2 ,3 )-4-fluorovaline, (2 ,3 )-4-fluorovaline or 4,4'-difluorovaline. The nuclear magnetic resonance (NMR) signals are distributed over a wide spectral range. The fluorinated samples maintain the relative chemical shifts of the wild-type protein, opening a convenient route to assign the -NMR signals. For the singly fluorinated residues, the chemical shifts of the remaining group are subject to a effect that depends on the population of different rotameric states of the group and correlates with coupling constants. In addition, the preferentially populated rotamers are reflected by the -gauche effect on chemical shifts, which correlates with couplings. Some of the side-chain conformations determined by these restraints position the fluorine atom near a backbone carbonyl group, a non-intuitive finding that has previously been observed in the high-resolution crystal structure of a different protein. Through-space scalar - couplings due to transient fluorine-fluorine contacts are observed between residues 39 and 54.
{"title":"<i>γ</i> effects identify preferentially populated rotamers of CH<sub>2</sub>F groups: side-chain conformations of fluorinated valine analogues in a protein.","authors":"Elwy H Abdelkader, Nicholas F Chilton, Ansis Maleckis, Gottfried Otting","doi":"10.5194/mr-6-257-2025","DOIUrl":"10.5194/mr-6-257-2025","url":null,"abstract":"<p><p>Using cell-free protein synthesis, the protein G B1 domain (GB1) was prepared with uniform high-level substitution of valine by (2 <math><mi>S</mi></math> ,3 <math><mi>S</mi></math> )-4-fluorovaline, (2 <math><mi>S</mi></math> ,3 <math><mi>R</mi></math> )-4-fluorovaline or 4,4'-difluorovaline. The <math> <mrow><msup><mi></mi> <mn>19</mn></msup> <mi>F</mi></mrow> </math> nuclear magnetic resonance (NMR) signals are distributed over a wide spectral range. The fluorinated samples maintain the relative <math> <mrow><msup><mi></mi> <mn>1</mn></msup> <mi>H</mi></mrow> </math> chemical shifts of the wild-type protein, opening a convenient route to assign the <math> <mrow><msup><mi></mi> <mn>19</mn></msup> <mi>F</mi></mrow> </math> -NMR signals. For the singly fluorinated residues, the <math> <mrow><msup><mi></mi> <mn>13</mn></msup> <mi>C</mi></mrow> </math> chemical shifts of the remaining <math> <mrow><msub><mi>CH</mi> <mn>3</mn></msub> </mrow> </math> group are subject to a <math><mi>γ</mi></math> effect that depends on the population of different rotameric states of the <math> <mrow><msub><mi>CH</mi> <mn>2</mn></msub> <mi>F</mi></mrow> </math> group and correlates with <math> <mrow><msup><mi></mi> <mn>3</mn></msup> <msub><mi>J</mi> <mi>FC</mi></msub> </mrow> </math> coupling constants. In addition, the preferentially populated rotamers are reflected by the <math><mi>γ</mi></math> -gauche effect on <math> <mrow><msup><mi></mi> <mn>19</mn></msup> <mi>F</mi></mrow> </math> chemical shifts, which correlates with <math> <mrow><msup><mi></mi> <mn>3</mn></msup> <msub><mi>J</mi> <mi>HF</mi></msub> </mrow> </math> couplings. Some of the side-chain conformations determined by these restraints position the fluorine atom near a backbone carbonyl group, a non-intuitive finding that has previously been observed in the high-resolution crystal structure of a different protein. Through-space scalar <math> <mrow><msup><mi></mi> <mn>19</mn></msup> <mi>F</mi></mrow> </math> - <math> <mrow><msup><mi></mi> <mn>19</mn></msup> <mi>F</mi></mrow> </math> couplings due to transient fluorine-fluorine contacts are observed between residues 39 and 54.</p>","PeriodicalId":93333,"journal":{"name":"Magnetic resonance (Gottingen, Germany)","volume":"6 2","pages":"257-272"},"PeriodicalIF":0.0,"publicationDate":"2025-11-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12753139/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145879570","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-11-10eCollection Date: 2025-01-01DOI: 10.5194/mr-6-243-2025
Lucky N Kapoor, Natália Ružičková, Predrag Živadinović, Valentin Leitner, Maria Anna Sisak, Cecelia Mweka, Jeroen Dobbelaere, Georgios Katsaros, Paul Schanda
Conference travel contributes to the climate footprint of academic research. Here, we provide a quantitative estimate of the carbon emissions associated with conference attendance by analyzing travel data from participants of 10 international conferences in the field of magnetic resonance, namely EUROMAR, ENC and ICMRBS. We find that attending a EUROMAR conference produces, on average, more than 1 t . For the analyzed conferences outside Europe, the corresponding value is about 2-3 times higher, on average, with intercontinental trips amounting to up to 5 t. We compare these conference-related emissions to other activities associated with research and show that conference travel is a substantial portion of the total climate footprint of a researcher in magnetic resonance. We explore several strategies to reduce these emissions, including the impact of selecting conference venues more strategically and the possibility of decentralized conferences. Through a detailed comparison of train versus air travel - accounting for both direct and infrastructure-related emissions - we demonstrate that train travel offers considerable carbon savings. These data may provide a basis for strategic choices of future conferences in the field and for individuals deciding on their conference attendance.
{"title":"Quantifying the carbon footprint of conference travel: the case of NMR meetings.","authors":"Lucky N Kapoor, Natália Ružičková, Predrag Živadinović, Valentin Leitner, Maria Anna Sisak, Cecelia Mweka, Jeroen Dobbelaere, Georgios Katsaros, Paul Schanda","doi":"10.5194/mr-6-243-2025","DOIUrl":"10.5194/mr-6-243-2025","url":null,"abstract":"<p><p>Conference travel contributes to the climate footprint of academic research. Here, we provide a quantitative estimate of the carbon emissions associated with conference attendance by analyzing travel data from participants of 10 international conferences in the field of magnetic resonance, namely EUROMAR, ENC and ICMRBS. We find that attending a EUROMAR conference produces, on average, more than 1 t <math> <mrow><msub><mi>CO</mi> <mrow><mn>2</mn> <mspace></mspace> <mi>eq</mi> <mo>.</mo></mrow> </msub> </mrow> </math> . For the analyzed conferences outside Europe, the corresponding value is about 2-3 times higher, on average, with intercontinental trips amounting to up to 5 t. We compare these conference-related emissions to other activities associated with research and show that conference travel is a substantial portion of the total climate footprint of a researcher in magnetic resonance. We explore several strategies to reduce these emissions, including the impact of selecting conference venues more strategically and the possibility of decentralized conferences. Through a detailed comparison of train versus air travel - accounting for both direct and infrastructure-related emissions - we demonstrate that train travel offers considerable carbon savings. These data may provide a basis for strategic choices of future conferences in the field and for individuals deciding on their conference attendance.</p>","PeriodicalId":93333,"journal":{"name":"Magnetic resonance (Gottingen, Germany)","volume":"6 2","pages":"243-256"},"PeriodicalIF":0.0,"publicationDate":"2025-11-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12658769/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145650229","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-09-03eCollection Date: 2025-01-01DOI: 10.5194/mr-6-229-2025
Jorge A Villanueva-Garibay, Andreas Tilch, Ana Paula Aguilar Alva, Guillaume Bouvignies, Frank Engelke, Fabien Ferrage, Agnes Glémot, Ulric B le Paige, Giulia Licciardi, Claudio Luchinat, Giacomo Parigi, Philippe Pelupessy, Enrico Ravera, Alessandro Ruda, Lucas Siemons, Olof Stenström, Jean-Max Tyburn
Combining high-resolution high-field nuclear magnetic resonance (NMR) with an evolution of spin systems at a low magnetic field offers many opportunities for the investigation of molecular motions and hyperpolarization and the exploration of field-dependent spin dynamics. Fast and reproducible transfer between high and low fields is required to minimize polarization losses due to longitudinal relaxation. Here, we introduce a new design of a sample shuttle that achieves remarkably high speeds ( 27 m s-1). This hybrid pneumatic-mechanical apparatus is compatible with conventional probes at the high-field center. We show applications in water relaxometry in solutions of paramagnetic ions, high-resolution proton relaxometry of a small molecule, and sample shuttling of a solution of a 42 kDa protein. Importantly, this fast sample shuttle (FSS) system is narrow, with a diameter of 6 mm for the sample shuttle container based on a standard 5 mm outer diameter glass tube, which should allow near access to the sample for magnetic manipulation at a low field.
高分辨率高场核磁共振(NMR)与低磁场下自旋系统的演化相结合,为分子运动和超极化的研究以及场相关自旋动力学的探索提供了许多机会。为了最大限度地减少由于纵向弛豫造成的极化损失,需要在高场和低场之间进行快速和可重复的转移。在这里,我们介绍了一种新设计的样品穿梭,可以达到非常高的速度(v max ~ 27 m s-1)。这种气动机械混合装置与传统的高场中心探头兼容。我们展示了在顺磁离子溶液中的水弛豫测量,小分子的高分辨率质子弛豫测量以及42 kDa蛋白质溶液的样品穿梭中的应用。重要的是,这种快速样品穿梭(FSS)系统很窄,基于标准外径5mm的玻璃管的样品穿梭容器直径为d = 6 mm,这应该允许在低场下接近样品进行磁操作。
{"title":"A fast sample shuttle to couple high and low magnetic fields and applications in high-resolution relaxometry.","authors":"Jorge A Villanueva-Garibay, Andreas Tilch, Ana Paula Aguilar Alva, Guillaume Bouvignies, Frank Engelke, Fabien Ferrage, Agnes Glémot, Ulric B le Paige, Giulia Licciardi, Claudio Luchinat, Giacomo Parigi, Philippe Pelupessy, Enrico Ravera, Alessandro Ruda, Lucas Siemons, Olof Stenström, Jean-Max Tyburn","doi":"10.5194/mr-6-229-2025","DOIUrl":"10.5194/mr-6-229-2025","url":null,"abstract":"<p><p>Combining high-resolution high-field nuclear magnetic resonance (NMR) with an evolution of spin systems at a low magnetic field offers many opportunities for the investigation of molecular motions and hyperpolarization and the exploration of field-dependent spin dynamics. Fast and reproducible transfer between high and low fields is required to minimize polarization losses due to longitudinal relaxation. Here, we introduce a new design of a sample shuttle that achieves remarkably high speeds ( <math> <mrow><msub><mi>v</mi> <mi>max</mi></msub> </mrow> </math> <math><mo>∼</mo></math> 27 m s<sup>-1</sup>). This hybrid pneumatic-mechanical apparatus is compatible with conventional probes at the high-field center. We show applications in water relaxometry in solutions of paramagnetic ions, high-resolution proton relaxometry of a small molecule, and sample shuttling of a solution of a 42 kDa protein. Importantly, this fast sample shuttle (FSS) system is narrow, with a diameter of <math><mi>d</mi></math> <math><mo>=</mo></math> 6 mm for the sample shuttle container based on a standard 5 mm outer diameter glass tube, which should allow near access to the sample for magnetic manipulation at a low field.</p>","PeriodicalId":93333,"journal":{"name":"Magnetic resonance (Gottingen, Germany)","volume":"6 2","pages":"229-241"},"PeriodicalIF":0.0,"publicationDate":"2025-09-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12614101/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145544112","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-08-12eCollection Date: 2025-01-01DOI: 10.5194/mr-6-211-2025
Elena Edinach, Xing Zhang, Chao-Yu Cui, Yin Yang, George Mitrikas, Alexey Bogdanov, Xun-Cheng Su, Daniella Goldfarb
<p><p>Pulse-dipolar electron paramagnetic resonance (PD-EPR) has emerged as an effective tool in structural biology, enabling distance measurements between spin labels attached to biomolecules. The sensitivity and accessible distance range of these measurements are governed by the phase memory time ( <math> <mrow><msub><mi>T</mi> <mi>m</mi></msub> </mrow> </math> ) of the spin labels. Understanding the decoherence mechanisms affecting <math> <mrow><msub><mi>T</mi> <mi>m</mi></msub> </mrow> </math> is crucial for optimizing sample preparation and spin-label design. This study investigates the phase relaxation behavior of two Gd(III) spin-label complexes, Gd-PyMTA and Gd-TPMTA, with various degrees of deuteration. These two complexes have significantly different zero-field-splitting (ZFS) parameters. Hahn echo decay and dynamical decoupling (DD) measurements were performed at W-band (95 GHz) in deuterated solvents (D<sub>2</sub>O <math><mo>/</mo></math> glycerol-d<sub>8</sub>), both for the free complexes and when conjugated to proteins. The impact of temperature, concentration, and field position within the EPR spectrum on <math> <mrow><msub><mi>T</mi> <mi>m</mi></msub> </mrow> </math> was examined. Results indicate that protons within 5 Å of the Gd(III) ion do not contribute to nuclear spin diffusion (NSD), and protein deuteration offers minimal enhancement in <math> <mrow><msub><mi>T</mi> <mi>m</mi></msub> </mrow> </math> . The dominant phase relaxation mechanisms identified at low concentrations were direct spin-lattice relaxation ( <math> <mrow><msub><mi>T</mi> <mn>1</mn></msub> </mrow> </math> ) and transient ZFS (tZFS) fluctuations. Dynamical decoupling (DD) measurements, using the Carr-Purcell sequence with <math><mo>∼</mo></math> 140 refocusing pulses, resolved the presence of two populations: one with a long phase relaxation time, <math> <mrow><msub><mi>T</mi> <mrow><mi>m</mi> <mo>,</mo> <mi>s</mi></mrow> </msub> </mrow> </math> , and the other with a short one, <math> <mrow><msub><mi>T</mi> <mrow><mi>m</mi> <mo>,</mo> <mi>f</mi></mrow> </msub> </mrow> </math> . The dominating mechanism for the slowly relaxing population is direct- <math> <mrow><msub><mi>T</mi> <mn>1</mn></msub> </mrow> </math> . <math> <mrow><msub><mi>T</mi> <mrow><mi>m</mi> <mo>,</mo> <mi>s</mi></mrow> </msub> </mrow> </math> showed no concentration dependence and was longer by a factor of about 2 than <math> <mrow><msub><mi>T</mi> <mi>m</mi></msub> </mrow> </math> for both complexes. We tentatively assign the increase in <math> <mrow><msub><mi>T</mi> <mrow><mi>m</mi> <mo>,</mo> <mi>s</mi></mrow> </msub> </mrow> </math> to full suppression of the residual indirect- <math> <mrow><msub><mi>T</mi> <mn>1</mn></msub> </mrow> </math> -induced spectral diffusion and NSD mechanisms. For the fast-relaxing population, <math> <mrow><msub><mi>T</mi> <mrow><mi>m</mi> <mo>,</mo> <mi>f</mi></mrow> </msub> </mrow> </math> is shorter for Gd-TPMTA; therefore, we assign it to populations
脉冲偶极电子顺磁共振(PD-EPR)已成为结构生物学中的一种有效工具,可以测量附着在生物分子上的自旋标签之间的距离。这些测量的灵敏度和可达距离范围由自旋标签的相记忆时间(T m)决定。了解脱相干机制对优化样品制备和自旋标签设计至关重要。本文研究了两种不同氘化程度的Gd(III)自旋标记配合物Gd- pymta和Gd- tpmta的相弛豫行为。这两种配合物具有明显不同的零场分裂(ZFS)参数。在氘化溶剂(D2O /甘油-d8)中,在w波段(95 GHz)进行了Hahn回波衰减和动态解耦(DD)测量,包括游离配合物和与蛋白质结合的配合物。研究了EPR光谱内温度、浓度和场位对tm的影响。结果表明,Gd(III)离子5 Å内的质子对核自旋扩散(NSD)没有贡献,蛋白质氘化对tm的增强作用最小。在低浓度下发现的主要相弛豫机制是直接自旋-晶格弛豫(t1)和瞬态ZFS (tZFS)波动。动态解耦(DD)测量,使用Carr-Purcell序列与~ 140重聚焦脉冲,解决了两个种群的存在:一个具有长相位松弛时间,T m, s,另一个具有短相位松弛时间,T m, f。缓慢放松人口的主导机制是直接- t1。tm, s没有浓度依赖性,比tm长约2倍。我们暂时将tms的增加归因于残余间接t1诱导的光谱扩散和NSD机制的完全抑制。对于快速放松的人群,T m, f对于Gd-TPMTA来说更短;因此,我们将其分配给tZFS机制占主导地位的种群。由于t1相对较短以及tZFS机制的贡献,蛋白质氘化对t1 m的影响不显著。
{"title":"Can label or protein deuteration extend the phase relaxation time of Gd(III) spin labels?","authors":"Elena Edinach, Xing Zhang, Chao-Yu Cui, Yin Yang, George Mitrikas, Alexey Bogdanov, Xun-Cheng Su, Daniella Goldfarb","doi":"10.5194/mr-6-211-2025","DOIUrl":"10.5194/mr-6-211-2025","url":null,"abstract":"<p><p>Pulse-dipolar electron paramagnetic resonance (PD-EPR) has emerged as an effective tool in structural biology, enabling distance measurements between spin labels attached to biomolecules. The sensitivity and accessible distance range of these measurements are governed by the phase memory time ( <math> <mrow><msub><mi>T</mi> <mi>m</mi></msub> </mrow> </math> ) of the spin labels. Understanding the decoherence mechanisms affecting <math> <mrow><msub><mi>T</mi> <mi>m</mi></msub> </mrow> </math> is crucial for optimizing sample preparation and spin-label design. This study investigates the phase relaxation behavior of two Gd(III) spin-label complexes, Gd-PyMTA and Gd-TPMTA, with various degrees of deuteration. These two complexes have significantly different zero-field-splitting (ZFS) parameters. Hahn echo decay and dynamical decoupling (DD) measurements were performed at W-band (95 GHz) in deuterated solvents (D<sub>2</sub>O <math><mo>/</mo></math> glycerol-d<sub>8</sub>), both for the free complexes and when conjugated to proteins. The impact of temperature, concentration, and field position within the EPR spectrum on <math> <mrow><msub><mi>T</mi> <mi>m</mi></msub> </mrow> </math> was examined. Results indicate that protons within 5 Å of the Gd(III) ion do not contribute to nuclear spin diffusion (NSD), and protein deuteration offers minimal enhancement in <math> <mrow><msub><mi>T</mi> <mi>m</mi></msub> </mrow> </math> . The dominant phase relaxation mechanisms identified at low concentrations were direct spin-lattice relaxation ( <math> <mrow><msub><mi>T</mi> <mn>1</mn></msub> </mrow> </math> ) and transient ZFS (tZFS) fluctuations. Dynamical decoupling (DD) measurements, using the Carr-Purcell sequence with <math><mo>∼</mo></math> 140 refocusing pulses, resolved the presence of two populations: one with a long phase relaxation time, <math> <mrow><msub><mi>T</mi> <mrow><mi>m</mi> <mo>,</mo> <mi>s</mi></mrow> </msub> </mrow> </math> , and the other with a short one, <math> <mrow><msub><mi>T</mi> <mrow><mi>m</mi> <mo>,</mo> <mi>f</mi></mrow> </msub> </mrow> </math> . The dominating mechanism for the slowly relaxing population is direct- <math> <mrow><msub><mi>T</mi> <mn>1</mn></msub> </mrow> </math> . <math> <mrow><msub><mi>T</mi> <mrow><mi>m</mi> <mo>,</mo> <mi>s</mi></mrow> </msub> </mrow> </math> showed no concentration dependence and was longer by a factor of about 2 than <math> <mrow><msub><mi>T</mi> <mi>m</mi></msub> </mrow> </math> for both complexes. We tentatively assign the increase in <math> <mrow><msub><mi>T</mi> <mrow><mi>m</mi> <mo>,</mo> <mi>s</mi></mrow> </msub> </mrow> </math> to full suppression of the residual indirect- <math> <mrow><msub><mi>T</mi> <mn>1</mn></msub> </mrow> </math> -induced spectral diffusion and NSD mechanisms. For the fast-relaxing population, <math> <mrow><msub><mi>T</mi> <mrow><mi>m</mi> <mo>,</mo> <mi>f</mi></mrow> </msub> </mrow> </math> is shorter for Gd-TPMTA; therefore, we assign it to populations ","PeriodicalId":93333,"journal":{"name":"Magnetic resonance (Gottingen, Germany)","volume":"6 2","pages":"211-228"},"PeriodicalIF":0.0,"publicationDate":"2025-08-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12753153/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145879688","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-07-29eCollection Date: 2025-01-01DOI: 10.5194/mr-6-199-2025
Sagar Wadhwa, Nan Wang, Klaus-Martin Reichert, Manuel Butzer, Omar Nassar, Mazin Jouda, Jan G Korvink, Ulrich Gengenbach, Dario Mager, Martin Ungerer
Additive manufacturing has enabled rapid prototyping of components with minimum investment in specific fabrication infrastructure. These tools allow for a fast iteration from design to functional prototypes within days or even hours. Such prototyping technologies exist in many fields, including three-dimensional mechanical components and printed electric circuit boards (PCBs) for electrical connectivity, to mention two. In the case of nuclear magnetic resonance (NMR) spectroscopy, one needs the combination of both fields; we need to fabricate three-dimensional electrically conductive tracks as coils that are wrapped around a sample container. Fabricating such structures is difficult (e.g., six-axis micro-milling) or simply not possible with conventional methods. In this paper, we modified an additive manufacturing method that is based on the extrusion of conductive ink to fast-prototype solenoidal coil designs for NMR. These NMR coils need to be as close to the sample as possible and, by their shape, have specific inductive values. The performance of the designs was first investigated using electromagnetic field simulations and circuit simulations. The coil found to have optimal parameters for NMR was fabricated by extrusion printing, and its performance was tested in a 1.05 imaging magnet. The objective is to demonstrate reproducible rapid prototyping of complicated designs with high precision that, as a side effect, hardly produces material waste during production.
{"title":"Automated manufacturing process for sustainable prototyping of nuclear magnetic resonance transceivers.","authors":"Sagar Wadhwa, Nan Wang, Klaus-Martin Reichert, Manuel Butzer, Omar Nassar, Mazin Jouda, Jan G Korvink, Ulrich Gengenbach, Dario Mager, Martin Ungerer","doi":"10.5194/mr-6-199-2025","DOIUrl":"10.5194/mr-6-199-2025","url":null,"abstract":"<p><p>Additive manufacturing has enabled rapid prototyping of components with minimum investment in specific fabrication infrastructure. These tools allow for a fast iteration from design to functional prototypes within days or even hours. Such prototyping technologies exist in many fields, including three-dimensional mechanical components and printed electric circuit boards (PCBs) for electrical connectivity, to mention two. In the case of nuclear magnetic resonance (NMR) spectroscopy, one needs the combination of both fields; we need to fabricate three-dimensional electrically conductive tracks as coils that are wrapped around a sample container. Fabricating such structures is difficult (e.g., six-axis micro-milling) or simply not possible with conventional methods. In this paper, we modified an additive manufacturing method that is based on the extrusion of conductive ink to fast-prototype solenoidal coil designs for NMR. These NMR coils need to be as close to the sample as possible and, by their shape, have specific inductive values. The performance of the designs was first investigated using electromagnetic field simulations and circuit simulations. The coil found to have optimal parameters for NMR was fabricated by extrusion printing, and its performance was tested in a 1.05 <math><mrow><mi>T</mi></mrow> </math> imaging magnet. The objective is to demonstrate reproducible rapid prototyping of complicated designs with high precision that, as a side effect, hardly produces material waste during production.</p>","PeriodicalId":93333,"journal":{"name":"Magnetic resonance (Gottingen, Germany)","volume":"6 2","pages":"199-210"},"PeriodicalIF":0.0,"publicationDate":"2025-07-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12332885/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144818591","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-07-17eCollection Date: 2025-01-01DOI: 10.5194/mr-6-183-2025
Jesús I Martínez, Susana Frago, Milagros Medina, Inés García-Rubio
<p><p>Flavoproteins are a versatile class of proteins involved in numerous biological processes, including redox reactions, electron transfer, and signal transduction, often relying on their ability to stabilize different oxidation states of their flavin cofactor. A critical feature of flavin cofactors is their capacity to achieve, within particular protein environments, a semiquinone state that plays a pivotal role in mediating single-electron transfer events and that is key to understanding flavoprotein reactivity. Hyperfine interactions between the unpaired electron and magnetic nuclei in the isoalloxazine ring provide valuable insights into the semiquinone state and its mechanistic roles. This study investigates the hyperfine interactions of isotopically labeled flavodoxin (Fld) with <math> <mrow><msup><mi></mi> <mn>13</mn></msup> <mi>C</mi></mrow> </math> and <math> <mrow><msup><mi></mi> <mn>15</mn></msup> <mi>N</mi></mrow> </math> in specific positions of the flavin mononucleotide (FMN) ring using advanced electron paramagnetic resonance (EPR) techniques. The combination of continuous-wave (CW) EPR at the X-band and ELDOR-detected NMR and HYSCORE at the Q-band revealed a strong and anisotropic hyperfine interaction with the nucleus of <math> <mrow><msup><mi></mi> <mn>13</mn></msup> <mi>C</mi></mrow> </math> at 4a and yielded principal tensor values of 40, <math><mrow><mo>-</mo> <mn>13.5</mn></mrow> </math> , and <math><mrow><mo>-</mo> <mn>9</mn></mrow> </math> MHz, the first of which is associated with the axis perpendicular to the flavin plane. On the other hand, as predicted, the hyperfine interaction with the <math> <mrow><msup><mi></mi> <mn>13</mn></msup> <mi>C</mi></mrow> </math> nucleus in position 2 was minimal. Additionally, HYSCORE experiments on <math> <mrow><msup><mi></mi> <mn>15</mn></msup> <mi>N</mi></mrow> </math> -FMN-labeled Fld provided precise axial hyperfine parameters, i.e., (74, 5.6, 5.6) <math><mrow><mi>MHz</mi></mrow> </math> for <math> <mrow><msup><mi></mi> <mn>15</mn></msup> <mi>N</mi></mrow> </math> (5) and (38, 3.2, 3.2) <math><mrow><mi>MHz</mi></mrow> </math> for <math> <mrow><msup><mi></mi> <mn>15</mn></msup> <mi>N</mi></mrow> </math> (10). These were used to refine quadrupole tensor values for <math> <mrow><msup><mi></mi> <mn>14</mn></msup> <mi>N</mi></mrow> </math> nuclei through isotope-dependent scaling. These results showcase the potential of combining CW EPR, ELDOR-detected NMR, and HYSCORE with isotopic labeling to probe electronic and nuclear interactions in flavoproteins. The new data complete and refine the existing experimental map for the electronic structure of the flavin cofactor and expose systematic divergences between the calculated and experimental values of hyperfine couplings of the atoms that contribute most to the semi-occupied orbital (SOMO). This could indicate a slight but significant shift in the unpaired electron density from position 4a towards the central nitrogens of the pyrazine ri
{"title":"Determining large hyperfine interactions of a model flavoprotein in the semiquinone state using pulse EPR (electron paramagnetic resonance) techniques.","authors":"Jesús I Martínez, Susana Frago, Milagros Medina, Inés García-Rubio","doi":"10.5194/mr-6-183-2025","DOIUrl":"10.5194/mr-6-183-2025","url":null,"abstract":"<p><p>Flavoproteins are a versatile class of proteins involved in numerous biological processes, including redox reactions, electron transfer, and signal transduction, often relying on their ability to stabilize different oxidation states of their flavin cofactor. A critical feature of flavin cofactors is their capacity to achieve, within particular protein environments, a semiquinone state that plays a pivotal role in mediating single-electron transfer events and that is key to understanding flavoprotein reactivity. Hyperfine interactions between the unpaired electron and magnetic nuclei in the isoalloxazine ring provide valuable insights into the semiquinone state and its mechanistic roles. This study investigates the hyperfine interactions of isotopically labeled flavodoxin (Fld) with <math> <mrow><msup><mi></mi> <mn>13</mn></msup> <mi>C</mi></mrow> </math> and <math> <mrow><msup><mi></mi> <mn>15</mn></msup> <mi>N</mi></mrow> </math> in specific positions of the flavin mononucleotide (FMN) ring using advanced electron paramagnetic resonance (EPR) techniques. The combination of continuous-wave (CW) EPR at the X-band and ELDOR-detected NMR and HYSCORE at the Q-band revealed a strong and anisotropic hyperfine interaction with the nucleus of <math> <mrow><msup><mi></mi> <mn>13</mn></msup> <mi>C</mi></mrow> </math> at 4a and yielded principal tensor values of 40, <math><mrow><mo>-</mo> <mn>13.5</mn></mrow> </math> , and <math><mrow><mo>-</mo> <mn>9</mn></mrow> </math> MHz, the first of which is associated with the axis perpendicular to the flavin plane. On the other hand, as predicted, the hyperfine interaction with the <math> <mrow><msup><mi></mi> <mn>13</mn></msup> <mi>C</mi></mrow> </math> nucleus in position 2 was minimal. Additionally, HYSCORE experiments on <math> <mrow><msup><mi></mi> <mn>15</mn></msup> <mi>N</mi></mrow> </math> -FMN-labeled Fld provided precise axial hyperfine parameters, i.e., (74, 5.6, 5.6) <math><mrow><mi>MHz</mi></mrow> </math> for <math> <mrow><msup><mi></mi> <mn>15</mn></msup> <mi>N</mi></mrow> </math> (5) and (38, 3.2, 3.2) <math><mrow><mi>MHz</mi></mrow> </math> for <math> <mrow><msup><mi></mi> <mn>15</mn></msup> <mi>N</mi></mrow> </math> (10). These were used to refine quadrupole tensor values for <math> <mrow><msup><mi></mi> <mn>14</mn></msup> <mi>N</mi></mrow> </math> nuclei through isotope-dependent scaling. These results showcase the potential of combining CW EPR, ELDOR-detected NMR, and HYSCORE with isotopic labeling to probe electronic and nuclear interactions in flavoproteins. The new data complete and refine the existing experimental map for the electronic structure of the flavin cofactor and expose systematic divergences between the calculated and experimental values of hyperfine couplings of the atoms that contribute most to the semi-occupied orbital (SOMO). This could indicate a slight but significant shift in the unpaired electron density from position 4a towards the central nitrogens of the pyrazine ri","PeriodicalId":93333,"journal":{"name":"Magnetic resonance (Gottingen, Germany)","volume":"6 2","pages":"183-197"},"PeriodicalIF":0.0,"publicationDate":"2025-07-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12326372/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144796350","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-07-17eCollection Date: 2025-01-01DOI: 10.5194/mr-6-173-2025
Mengjia He, Neil MacKinnon, Dominique Buyens, Burkhard Luy, Jan G Korvink
The implementation of parallel nuclear magnetic resonance detection aims to enhance measurement throughput in support of high-throughput-screening applications, including, for example, drug discovery. In support of modern pulse sequences and solvent suppression methods, each detection site must have independent pulsed field gradient capabilities. Hereby, a challenge is introduced in which the local gradients applied in parallel detectors introduce field spillover into adjacent channels, leading to spin dephasing and, hence, to signal suppression. This study proposes a compensation scheme employing optimized pulses to achieve coherence locking during gradient pulse periods. The design of coherence-locking pulses utilizes optimal control to address gradient-induced field inhomogeneity. These pulses are applied in a pulsed-gradient spin echo (PGSE) experiment and a parallel heteronuclear single quantum coherence (HSQC) experiment, demonstrating their effectiveness in protecting the desired coherences from gradient field spillover. This compensation scheme presents a valuable solution for magnetic resonance probes equipped with parallel and independently switchable gradient coils.
{"title":"Coherence locking in a parallel nuclear magnetic resonance probe defends against gradient field spillover.","authors":"Mengjia He, Neil MacKinnon, Dominique Buyens, Burkhard Luy, Jan G Korvink","doi":"10.5194/mr-6-173-2025","DOIUrl":"10.5194/mr-6-173-2025","url":null,"abstract":"<p><p>The implementation of parallel nuclear magnetic resonance detection aims to enhance measurement throughput in support of high-throughput-screening applications, including, for example, drug discovery. In support of modern pulse sequences and solvent suppression methods, each detection site must have independent pulsed field gradient capabilities. Hereby, a challenge is introduced in which the local gradients applied in parallel detectors introduce field spillover into adjacent channels, leading to spin dephasing and, hence, to signal suppression. This study proposes a compensation scheme employing optimized pulses to achieve coherence locking during gradient pulse periods. The design of coherence-locking pulses utilizes optimal control to address gradient-induced field inhomogeneity. These pulses are applied in a pulsed-gradient spin echo (PGSE) experiment and a parallel heteronuclear single quantum coherence (HSQC) experiment, demonstrating their effectiveness in protecting the desired coherences from gradient field spillover. This compensation scheme presents a valuable solution for magnetic resonance probes equipped with parallel and independently switchable gradient coils.</p>","PeriodicalId":93333,"journal":{"name":"Magnetic resonance (Gottingen, Germany)","volume":"6 2","pages":"173-181"},"PeriodicalIF":0.0,"publicationDate":"2025-07-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12302023/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144736011","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}