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A magnetic field compatible readout circuit for enhanced coincidence time resolution in BGO Cherenkov radiation-based TOF-PET detectors.
Pub Date : 2025-01-29 DOI: 10.1002/mp.17643
Shirin Pourashraf, Joshua W Cates, Craig S Levin

Background: Developing time-of-flight positron emission tomography/magnetic resonance imaging (TOF-PET/MRI) detectors that exploit prompt Cherenkov photons from bismuth germanate (BGO) crystals for estimating 511 keV photon arrival time.

Purpose: To present a low-noise, high-speed electronic readout circuit design for BGO-based TOF-PET detectors that achieves enhanced coincidence time resolution (CTR) in presence of a strong magnetic field.

Methods: The CTR of a BGO-based TOF-PET test detector employing a high-speed, low-noise electronic readout chain was evaluated in a strong magnetic field produced by a permanent magnet placed directly on top of the circuit. For these experiments, which exploit Cherenkov radiation for precise measurement of annihilation photon time arrival time difference, a point source of 22Na was positioned between a pair of 3 × 3 × 15 mm3 polished BGO crystals wrapped in Teflon tape and optically coupled to 3 × 3 mm2 ultra-violet (UV)-sensitive silicon photomultipliers (SiPMs).

Results: By incorporating both Cherenkov (prompt) and standard (slow) luminescence components, 283 ± 8 ps and 275 ± 10 ps full-width-half-maximum (FWHM) CTR were achieved without and with the permanent magnet present, respectfully. These values improved to 236 ± 4 ps and 216 ± 17 ps FWHM when only the Cherenkov components of the timing signal (events with the fastest rise time) were considered.

Conclusions: Results indicate we have designed a high-performance readout circuit that achieves significantly the same CTR in BGO with or without a strong magnetic field present. This further demonstrates that UV SiPMs can effectively operate in a strong magnetic field while remaining highly advantageous for detecting Cherenkov radiation, thus highlighting their potential to be used in BGO-based TOF-PET/MRI scanners.

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引用次数: 0
MR imaging of proton beam-induced oxygen depletion.
Pub Date : 2025-01-28 DOI: 10.1002/mp.17622
Juliane Schieferecke, Aswin Hoffmann, Jörg Pawelke
<p><strong>Background: </strong>Previous studies have shown that in-beam magnetic resonance imaging (MRI) can be used to visualize a proton beam during the irradiation of liquid-filled phantoms. The beam energy- and current-dependent local image contrast observed in water was identified to be predominantly caused by beam-induced buoyant convection and associated flow effects. Besides this flow dependency, the MR signal change was found to be characterized by a change in the <math> <semantics><msub><mi>T</mi> <mn>1</mn></msub> <annotation>${rm T}_{1}$</annotation></semantics> </math> relaxation time of water, hinting at a radiochemical contribution, which was hypothesized to lie in oxygen depletion-evoked <math> <semantics><msub><mi>T</mi> <mn>1</mn></msub> <annotation>${rm T}_{1}$</annotation></semantics> </math> relaxation time lengthening. The elucidation of the underlying contrast mechanism is required to enable the further assessment of the application potential of MRI-based proton beam visualization in tissue.</p><p><strong>Purpose: </strong>The underlying radiochemical cause of the observed local beam-induced change in the <math> <semantics><msub><mi>T</mi> <mn>1</mn></msub> <annotation>${rm T}_{1}$</annotation></semantics> </math> relaxation time of water should be identified in beam visualization experiments testing the hypothesis of beam-induced oxygen depletion-evoked <math> <semantics><msub><mi>T</mi> <mn>1</mn></msub> <annotation>${rm T}_{1}$</annotation></semantics> </math> relaxation time lengthening.</p><p><strong>Methods: </strong>Combined irradiation and imaging experiments were performed using static proton pencil beam irradiation, background-nulled inversion recovery (IR) MRI and a range of flow-restricted phantoms differing in initial oxygen concentration and homogeneity. The similarity of the irradiation-induced MRI contrast to the proton pencil beam dose distribution acquired on radiochromic film, the expected dose dependence and temporal stability, the TR dependence as well as the dependence on the initial oxygen concentration and the oxygen consumption rate were tested. Moreover, the feasibility of oxygen depletion-based beam visualization in tissue-mimicking phantoms was assessed. The levels of irradiation-induced oxygen depletion and <math> <semantics><msub><mi>T</mi> <mn>1</mn></msub> <annotation>${rm T}_{1}$</annotation></semantics> </math> relaxation time lengthening were estimated based on the measured temperatures and initial oxygen concentrations of the phantoms, the experimentally determined inversion times required for phantom background signal nulling and dosimetric measurements.</p><p><strong>Results: </strong>The proton irradiation-induced contrast in background-nulled IR images of well oxygenated phantoms was found similar to the proton pencil beam dose distribution and showed the characteristics expected for oxygen depletion-induced MRI contrast. No beam-induced contrast was observed in the poorly oxygenated
{"title":"MR imaging of proton beam-induced oxygen depletion.","authors":"Juliane Schieferecke, Aswin Hoffmann, Jörg Pawelke","doi":"10.1002/mp.17622","DOIUrl":"https://doi.org/10.1002/mp.17622","url":null,"abstract":"&lt;p&gt;&lt;strong&gt;Background: &lt;/strong&gt;Previous studies have shown that in-beam magnetic resonance imaging (MRI) can be used to visualize a proton beam during the irradiation of liquid-filled phantoms. The beam energy- and current-dependent local image contrast observed in water was identified to be predominantly caused by beam-induced buoyant convection and associated flow effects. Besides this flow dependency, the MR signal change was found to be characterized by a change in the &lt;math&gt; &lt;semantics&gt;&lt;msub&gt;&lt;mi&gt;T&lt;/mi&gt; &lt;mn&gt;1&lt;/mn&gt;&lt;/msub&gt; &lt;annotation&gt;${rm T}_{1}$&lt;/annotation&gt;&lt;/semantics&gt; &lt;/math&gt; relaxation time of water, hinting at a radiochemical contribution, which was hypothesized to lie in oxygen depletion-evoked &lt;math&gt; &lt;semantics&gt;&lt;msub&gt;&lt;mi&gt;T&lt;/mi&gt; &lt;mn&gt;1&lt;/mn&gt;&lt;/msub&gt; &lt;annotation&gt;${rm T}_{1}$&lt;/annotation&gt;&lt;/semantics&gt; &lt;/math&gt; relaxation time lengthening. The elucidation of the underlying contrast mechanism is required to enable the further assessment of the application potential of MRI-based proton beam visualization in tissue.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Purpose: &lt;/strong&gt;The underlying radiochemical cause of the observed local beam-induced change in the &lt;math&gt; &lt;semantics&gt;&lt;msub&gt;&lt;mi&gt;T&lt;/mi&gt; &lt;mn&gt;1&lt;/mn&gt;&lt;/msub&gt; &lt;annotation&gt;${rm T}_{1}$&lt;/annotation&gt;&lt;/semantics&gt; &lt;/math&gt; relaxation time of water should be identified in beam visualization experiments testing the hypothesis of beam-induced oxygen depletion-evoked &lt;math&gt; &lt;semantics&gt;&lt;msub&gt;&lt;mi&gt;T&lt;/mi&gt; &lt;mn&gt;1&lt;/mn&gt;&lt;/msub&gt; &lt;annotation&gt;${rm T}_{1}$&lt;/annotation&gt;&lt;/semantics&gt; &lt;/math&gt; relaxation time lengthening.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Methods: &lt;/strong&gt;Combined irradiation and imaging experiments were performed using static proton pencil beam irradiation, background-nulled inversion recovery (IR) MRI and a range of flow-restricted phantoms differing in initial oxygen concentration and homogeneity. The similarity of the irradiation-induced MRI contrast to the proton pencil beam dose distribution acquired on radiochromic film, the expected dose dependence and temporal stability, the TR dependence as well as the dependence on the initial oxygen concentration and the oxygen consumption rate were tested. Moreover, the feasibility of oxygen depletion-based beam visualization in tissue-mimicking phantoms was assessed. The levels of irradiation-induced oxygen depletion and &lt;math&gt; &lt;semantics&gt;&lt;msub&gt;&lt;mi&gt;T&lt;/mi&gt; &lt;mn&gt;1&lt;/mn&gt;&lt;/msub&gt; &lt;annotation&gt;${rm T}_{1}$&lt;/annotation&gt;&lt;/semantics&gt; &lt;/math&gt; relaxation time lengthening were estimated based on the measured temperatures and initial oxygen concentrations of the phantoms, the experimentally determined inversion times required for phantom background signal nulling and dosimetric measurements.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Results: &lt;/strong&gt;The proton irradiation-induced contrast in background-nulled IR images of well oxygenated phantoms was found similar to the proton pencil beam dose distribution and showed the characteristics expected for oxygen depletion-induced MRI contrast. No beam-induced contrast was observed in the poorly oxygenated","PeriodicalId":94136,"journal":{"name":"Medical physics","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-01-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143054697","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Photon mini-GRID therapy for preoperative breast cancer tumor treatment: A treatment plan study.
Pub Date : 2025-01-28 DOI: 10.1002/mp.17634
Angela Corvino, Tim Schneider, Jeremi Vu-Bezin, Pierre Loap, Youlia Kirova, Yolanda Prezado
<p><strong>Background: </strong>Breast cancer is the leading cause of female cancer mortality worldwide, accounting for 1 in 6 cancer deaths. Surgery, radiation, and systemic therapy are the three pillars of breast cancer treatment, with several strategies developed to combine them. The association of preoperative radiotherapy with immunotherapy may improve breast cancer tumor control by exploiting the tumor radio-induced immune priming. However, this requires the use of hypofractionated radiotherapy (3 × 8 Gy), increasing the risk of toxicity. Mini-GRID therapy (mini-GRT) is an innovative form of spatially fractionated radiation therapy (SFRT) characterized by narrow beam widths between 1 to 2 mm that promises a significant increase in normal tissue dose tolerances and could thereby represent a new alternative for preoperative breast cancer treatment. Mini-GRT has been successfully implemented at the Hospital de Santiago de Compostela (Spain) with a flattening filter-free LINAC (megavoltage x-rays).</p><p><strong>Purpose: </strong>In this dosimetry proof-of-concept study, we evaluate the feasibility of photon mini-GRT for preoperative breast cancer treatment. We also assess the clinical potential of mini-GRT and compare it with the current treatment standard of intensity-modulated radiotherapy (IMRT).</p><p><strong>Methods: </strong>Seven unbiased breast cancer dosimetries of patients treated with stereotactic body radiotherapy (SBRT) (3 × 8 Gy, IMRT) were selected for the study. Photon mini-GRT was compared with SBRT using three main criteria: (i) the dose to organs at risk (OARs), (ii) the dose constraints dictated by normal tissue tolerance, and (iii) the lateral penumbra in OARs. Tumor coverage was evaluated in terms of normalized total dose at 8 Gy-fractions. The optimized SBRT by IMRT was realized at the Institut Curie, Paris, France. The dose in mini-GRT was calculated by means of Monte Carlo simulations based on the mini-GRT implementation realized at the University Hospital in Santiago de Compostela.</p><p><strong>Results: </strong>Compared to SBRT plans, mini-GRT resulted in a reduction of the mean dose to the lungs, heart, chest wall, and lymph nodes in the studied cases by a factor ranging from 50% to 100%. Additionally, valley, mean, and peak doses to normal tissues meet the dose tolerance limits for the considered OARs, the most challenging of all being the skin. The mean dose to the skin was reduced (20%-60% less) for most of the studied cases. Mini-GRT also yielded sharper lateral penumbras in the skin and lungs (size reduced by at least 50%). Similar tumor integral doses were obtained for the two treatment modalities.</p><p><strong>Conclusion: </strong>Mini-GRT with megavoltage x-rays is an innovative treatment approach already implemented in a clinical context. In this proof-of-concept study, we evaluated mini-GRT for partial breast cancer irradiation, demonstrating its potential for preoperative treatment thanks to the high sk
{"title":"Photon mini-GRID therapy for preoperative breast cancer tumor treatment: A treatment plan study.","authors":"Angela Corvino, Tim Schneider, Jeremi Vu-Bezin, Pierre Loap, Youlia Kirova, Yolanda Prezado","doi":"10.1002/mp.17634","DOIUrl":"https://doi.org/10.1002/mp.17634","url":null,"abstract":"&lt;p&gt;&lt;strong&gt;Background: &lt;/strong&gt;Breast cancer is the leading cause of female cancer mortality worldwide, accounting for 1 in 6 cancer deaths. Surgery, radiation, and systemic therapy are the three pillars of breast cancer treatment, with several strategies developed to combine them. The association of preoperative radiotherapy with immunotherapy may improve breast cancer tumor control by exploiting the tumor radio-induced immune priming. However, this requires the use of hypofractionated radiotherapy (3 × 8 Gy), increasing the risk of toxicity. Mini-GRID therapy (mini-GRT) is an innovative form of spatially fractionated radiation therapy (SFRT) characterized by narrow beam widths between 1 to 2 mm that promises a significant increase in normal tissue dose tolerances and could thereby represent a new alternative for preoperative breast cancer treatment. Mini-GRT has been successfully implemented at the Hospital de Santiago de Compostela (Spain) with a flattening filter-free LINAC (megavoltage x-rays).&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Purpose: &lt;/strong&gt;In this dosimetry proof-of-concept study, we evaluate the feasibility of photon mini-GRT for preoperative breast cancer treatment. We also assess the clinical potential of mini-GRT and compare it with the current treatment standard of intensity-modulated radiotherapy (IMRT).&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Methods: &lt;/strong&gt;Seven unbiased breast cancer dosimetries of patients treated with stereotactic body radiotherapy (SBRT) (3 × 8 Gy, IMRT) were selected for the study. Photon mini-GRT was compared with SBRT using three main criteria: (i) the dose to organs at risk (OARs), (ii) the dose constraints dictated by normal tissue tolerance, and (iii) the lateral penumbra in OARs. Tumor coverage was evaluated in terms of normalized total dose at 8 Gy-fractions. The optimized SBRT by IMRT was realized at the Institut Curie, Paris, France. The dose in mini-GRT was calculated by means of Monte Carlo simulations based on the mini-GRT implementation realized at the University Hospital in Santiago de Compostela.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Results: &lt;/strong&gt;Compared to SBRT plans, mini-GRT resulted in a reduction of the mean dose to the lungs, heart, chest wall, and lymph nodes in the studied cases by a factor ranging from 50% to 100%. Additionally, valley, mean, and peak doses to normal tissues meet the dose tolerance limits for the considered OARs, the most challenging of all being the skin. The mean dose to the skin was reduced (20%-60% less) for most of the studied cases. Mini-GRT also yielded sharper lateral penumbras in the skin and lungs (size reduced by at least 50%). Similar tumor integral doses were obtained for the two treatment modalities.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Conclusion: &lt;/strong&gt;Mini-GRT with megavoltage x-rays is an innovative treatment approach already implemented in a clinical context. In this proof-of-concept study, we evaluated mini-GRT for partial breast cancer irradiation, demonstrating its potential for preoperative treatment thanks to the high sk","PeriodicalId":94136,"journal":{"name":"Medical physics","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-01-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143054701","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Scanning K-edge subtraction (SKES) imaging with laser-compton x-ray sources.
Pub Date : 2025-01-28 DOI: 10.1002/mp.17638
Trevor Reutershan, Christine V Nguyen, Haytham H Effarah, Eric C Nelson, Kyle D Chesnut, Christopher P J Barty

Background: K-edge subtraction (KES) imaging is a dual-energy imaging technique that enhances contrast by subtracting images taken with x-rays that are above and below the K-edge energy of a specified contrast agent. The resulting reconstruction spatially identifies where the contrast agent accumulates, even when obscured by complex and heterogeneous distributions of human tissue. This method is most successful when x-ray sources are quasimonoenergetic and tunable, conditions that have traditionally only been met at synchrotrons. Laser-Compton x-ray sources (LCSs) are a compact alternative to synchrotron radiation with a quasimonoenergetic x-ray spectrum. One limitation in the clinical application of KES imaging with LCSs has been the extensive time required to tune the x-ray spectrum to two different energies.

Purpose: We introduce an imaging technique called scanning K-edge subtraction (SKES) that leverages the angle-correlated laser-Compton x-ray spectrum in the setting of mammography. The feasibility and utility of this technique will be evaluated through a series of simulation studies. The goal of SKES imaging is to enable rapid K-edge subtraction imaging using a laser-Compton x-ray source. The technique does not rely on the time-consuming process of tuning laser-Compton interaction parameters.

Methods: Laser-Compton interaction physics are modeled using conditions based on an X-band linear electron accelerator architecture currently under development using a combination of 3D particle tracking software and Mathematica. The resulting angle-correlated laser-Compton x-ray beam is propagated through digitally compressed breast phantoms containing iodine contrast-enhanced inserts and then to a digital flat-panel detector using a Matlab Monte Carlo propagation software. This scanning acquisition technique is compared to the direct energy tuning method (DET), as well as to a clinically available dual-energy contrast-enhanced mammography (CEM) system.

Results: KES imaging in a scanning configuration using an LCS was able to generate a KES image of comparable quality to the direct energy tuning method. SKES was able to detect tumors with iodine contrast concentrations lower than what is clinically available today including lesions that are typically obscured by dense fibroglandular tissue. After normalizing to mean glandular dose, SKES is able to generate a KES image with equal contrast to CEM using only 3% of the dose.

Conclusions: By leveraging the unique quasimonochromatic and angle-correlated x-ray spectrum offered by LCSs, a contrast-enhanced subtraction image can be obtained with significantly more contrast and less dose compared to conventional systems, and improve tumor detection in patients with dense breast tissue. The scanning configuration of this technique could accelerate the clinical translation of this technology.

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引用次数: 0
Harmonic analysis and optimization for closed-loop superconducting shim coils of 7 T MRI magnet.
Pub Date : 2025-01-28 DOI: 10.1002/mp.17641
Zijie Lin, Zhan Zhang, Jiaxin Li, Zhaoyao Gao, Zhenyu Chu, Yongsuo Liu, Panfeng Zhang, Leping Wu, Chao Zhou

Background: High-resolution brain imaging is crucial in clinical diagnosis and neuroscience, with ultra-high field strength MRI systems ( 7 T $ ge 7 {mathrm{T}}$ ) offering significant advantages for imaging neuronal microstructures. However, achieving magnetic field homogeneity is challenging due to engineering faults during the installation of superconducting strip windings and the primary magnet.

Purpose: This study aims to design and optimize active superconducting shim coils for a 7 T animal MRI system, focusing on the impact of safety margin, size, and adjustability of the second-order shim coils on the MRI system's optimization.

Methods: The study employs a nonlinear optimization method to determine the parameters of the shim coils, considering the size of the coil, the level of undesired harmonics, and the whole number approximation of the turns in each coil. The study also conducts a thorough robustness analysis, examining the effects of coil winding accuracy, former processing accuracy, and assembly angle accuracy on the harmonic intensity of each coil.

Results: The optimization design results for the 7 T MRI system's shim coils show that the magnetic field changes are less than 0.5 %. After second-order shimming and the harmonic coupling an, the low-order harmonics are minimized, resulting in an improved magnetic field peak-to-peak uniformity from 254.47 to 8.970 ppm.

Conclusion: The study successfully demonstrates the creation of a set of second-order shim coils for a 7 T animal MRI system through numerical optimization. The design outputs provide essential technological support for the development of a human whole-body 7 T MRI system, ensuring high-quality imaging at the neuronal level. The project also highlights the importance of considering manufacturing and assembly flaws in the shim coil design process to achieve effective shimming in practical engineering scenarios.

{"title":"Harmonic analysis and optimization for closed-loop superconducting shim coils of 7 T MRI magnet.","authors":"Zijie Lin, Zhan Zhang, Jiaxin Li, Zhaoyao Gao, Zhenyu Chu, Yongsuo Liu, Panfeng Zhang, Leping Wu, Chao Zhou","doi":"10.1002/mp.17641","DOIUrl":"https://doi.org/10.1002/mp.17641","url":null,"abstract":"<p><strong>Background: </strong>High-resolution brain imaging is crucial in clinical diagnosis and neuroscience, with ultra-high field strength MRI systems ( <math> <semantics><mrow><mo>≥</mo> <mn>7</mn> <mspace></mspace> <mi>T</mi></mrow> <annotation>$ ge 7 {mathrm{T}}$</annotation></semantics> </math> ) offering significant advantages for imaging neuronal microstructures. However, achieving magnetic field homogeneity is challenging due to engineering faults during the installation of superconducting strip windings and the primary magnet.</p><p><strong>Purpose: </strong>This study aims to design and optimize active superconducting shim coils for a 7 T animal MRI system, focusing on the impact of safety margin, size, and adjustability of the second-order shim coils on the MRI system's optimization.</p><p><strong>Methods: </strong>The study employs a nonlinear optimization method to determine the parameters of the shim coils, considering the size of the coil, the level of undesired harmonics, and the whole number approximation of the turns in each coil. The study also conducts a thorough robustness analysis, examining the effects of coil winding accuracy, former processing accuracy, and assembly angle accuracy on the harmonic intensity of each coil.</p><p><strong>Results: </strong>The optimization design results for the 7 T MRI system's shim coils show that the magnetic field changes are less than 0.5 %. After second-order shimming and the harmonic coupling an, the low-order harmonics are minimized, resulting in an improved magnetic field peak-to-peak uniformity from 254.47 to 8.970 ppm.</p><p><strong>Conclusion: </strong>The study successfully demonstrates the creation of a set of second-order shim coils for a 7 T animal MRI system through numerical optimization. The design outputs provide essential technological support for the development of a human whole-body 7 T MRI system, ensuring high-quality imaging at the neuronal level. The project also highlights the importance of considering manufacturing and assembly flaws in the shim coil design process to achieve effective shimming in practical engineering scenarios.</p>","PeriodicalId":94136,"journal":{"name":"Medical physics","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-01-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143061629","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Model-based perfusion reconstruction with time separation technique in cone-beam CT dynamic liver perfusion imaging.
Pub Date : 2025-01-27 DOI: 10.1002/mp.17652
Hana Haseljić, Robert Frysch, Vojtěch Kulvait, Thomas Werncke, Inga Brüsch, Oliver Speck, Jessica Schulz, Michael Manhart, Georg Rose

Background: The success of embolization, a minimally invasive treatment of liver cancer, could be evaluated in the operational room with cone-beam CT by acquiring a dynamic perfusion scan to inspect the contrast agent flow.

Purpose: The reconstruction algorithm must address the issues of low temporal sampling and higher noise levels inherent in cone-beam CT systems, compared to conventional CT.

Methods: Therefore, a model-based perfusion reconstruction based on the time separation technique (TST) was applied. TST uses basis functions to model time attenuation curves. These functions are either analytical or based on prior knowledge (PK), extracted using singular value decomposition of the classical CT perfusion data of animal subjects. To explore how well the PK can model perfusion dynamics and what the potential limitations are, the dynamic cone-beam CT (CBCT) perfusion scan was simulated from a dynamic CT perfusion scan under different noise levels. The TST method was compared to static reconstruction.

Results: It was demonstrated on this simulated dynamic CBCT perfusion scan that a set consisting of only four basis functions results in perfusion maps that preserve relevant information, denoise the data, and outperform static reconstruction under higher noise levels. TST with PK would not only outperform static reconstruction but also the TST with analytical basis functions. Furthermore, it has been shown that only eight CBCT rotations, unlike previously assumed ten, are sufficient to obtain the perfusion maps comparable to the reference CT perfusion maps. This contributes to saving dose and reconstruction time. The real dynamic CBCT perfusion scan, reconstructed under the same conditions as the simulated scan, shows potential for maintaining the accuracy of the perfusion maps. By visual inspection, the embolized region was matching to that in corresponding CT perfusion maps.

Conclusions: CBCT reconstruction of perfusion scan data using the TST method has shown promising potential, outperforming static reconstructions and potentially saving dose by reducing the necessary number of acquisition sweeps. Further analysis of a larger cohort of patient data is needed to draw final conclusions regarding the expected advantages of the TST.

{"title":"Model-based perfusion reconstruction with time separation technique in cone-beam CT dynamic liver perfusion imaging.","authors":"Hana Haseljić, Robert Frysch, Vojtěch Kulvait, Thomas Werncke, Inga Brüsch, Oliver Speck, Jessica Schulz, Michael Manhart, Georg Rose","doi":"10.1002/mp.17652","DOIUrl":"https://doi.org/10.1002/mp.17652","url":null,"abstract":"<p><strong>Background: </strong>The success of embolization, a minimally invasive treatment of liver cancer, could be evaluated in the operational room with cone-beam CT by acquiring a dynamic perfusion scan to inspect the contrast agent flow.</p><p><strong>Purpose: </strong>The reconstruction algorithm must address the issues of low temporal sampling and higher noise levels inherent in cone-beam CT systems, compared to conventional CT.</p><p><strong>Methods: </strong>Therefore, a model-based perfusion reconstruction based on the time separation technique (TST) was applied. TST uses basis functions to model time attenuation curves. These functions are either analytical or based on prior knowledge (PK), extracted using singular value decomposition of the classical CT perfusion data of animal subjects. To explore how well the PK can model perfusion dynamics and what the potential limitations are, the dynamic cone-beam CT (CBCT) perfusion scan was simulated from a dynamic CT perfusion scan under different noise levels. The TST method was compared to static reconstruction.</p><p><strong>Results: </strong>It was demonstrated on this simulated dynamic CBCT perfusion scan that a set consisting of only four basis functions results in perfusion maps that preserve relevant information, denoise the data, and outperform static reconstruction under higher noise levels. TST with PK would not only outperform static reconstruction but also the TST with analytical basis functions. Furthermore, it has been shown that only eight CBCT rotations, unlike previously assumed ten, are sufficient to obtain the perfusion maps comparable to the reference CT perfusion maps. This contributes to saving dose and reconstruction time. The real dynamic CBCT perfusion scan, reconstructed under the same conditions as the simulated scan, shows potential for maintaining the accuracy of the perfusion maps. By visual inspection, the embolized region was matching to that in corresponding CT perfusion maps.</p><p><strong>Conclusions: </strong>CBCT reconstruction of perfusion scan data using the TST method has shown promising potential, outperforming static reconstructions and potentially saving dose by reducing the necessary number of acquisition sweeps. Further analysis of a larger cohort of patient data is needed to draw final conclusions regarding the expected advantages of the TST.</p>","PeriodicalId":94136,"journal":{"name":"Medical physics","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143054643","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Validity of one-time phantomless patient-specific quality assurance in proton therapy with regard to the reproducibility of beam delivery.
Pub Date : 2025-01-27 DOI: 10.1002/mp.17637
Lukas Cornelius Wolter, Fabian Hennings, Jozef Bokor, Christian Richter, Kristin Stützer
<p><strong>Background: </strong>Patient-specific quality assurance (PSQA) is a crucial yet resource-intensive task in proton therapy, requiring special equipment, expertise and additional beam time. Machine delivery log files contain information about energy, position and monitor units (MU) of all delivered spots, allowing a reconstruction of the applied dose. This raises the prospect of phantomless, log file-based QA (LFQA) as an automated replacement of current phantom-based solutions, provided that such an approach guarantees a comparable level of safety.</p><p><strong>Purpose: </strong>To retrieve a reliable LFQA conclusion from a one-time plan delivery before treatment initiation, deviations between planned and logged parameters must either be persistent over all following treatment fractions or, in case of random fluctuations, must not have a relevant impact on the reconstructed dose distribution. We therefore investigated the reproducibility of log file parameters over multiple patient treatment fractions and compared the reconstructed dose distributions.</p><p><strong>Methods: </strong>Log file variability was examined at both spot parameter and integral dose levels. The log files of 14 patient treatment plans were analyzed retrospectively for a total of 339 delivered fractions. From the recorded x/y position and MU parameters per spot, the respective mean difference to the planned value (accuracy) and the standard deviation (reproducibility) were calculated for 108,610 planned spots. The dose distributions reconstructed from the log files of each fraction were evaluated against the planned fraction dose using 3D gamma index analysis. The dose-based gamma pass rate <math><semantics><mi>Γ</mi> <annotation>$Gamma$</annotation></semantics> </math> was correlated with a new spot-based log file pass rate <math><semantics><mi>Λ</mi> <annotation>${Lambda}$</annotation></semantics> </math> . Beam timing information from the log files was used to quantify the total plan/field delivery time stability after excluding machine interlocks.</p><p><strong>Results: </strong>The mean spot-wise accuracy with respect to distance from planned positions and MUs was (0.6 ± 0.3) mm and (0.0001 ± 0.0023) MU, respectively. The mean reproducibility of the observed single spot deviations was (0.2 ± 0.1) mm and (0.0004 ± 0.0004) MU (mean ± standard deviation). These variations resulted in minimal changes in the reconstructed fraction dose with <math><semantics><mi>Γ</mi> <annotation>${{Gamma}}$</annotation></semantics> </math> (2 mm/2%) > 99% for all studied fractions. Results for more sensitive criteria <math><semantics><mi>Γ</mi> <annotation>${{Gamma}}$</annotation></semantics> </math> (1 mm/1%) were plan-specific, but on average > 92.6% per plan and correlated with <math><semantics><mi>Λ</mi> <annotation>${{Lambda}}$</annotation></semantics> </math> (1 mm) pass rates (0.51 ≤ r<sub>Pearson</sub> ≤ 0.99). Field delivery times were reproducible within ± 4 s (2σ) and
{"title":"Validity of one-time phantomless patient-specific quality assurance in proton therapy with regard to the reproducibility of beam delivery.","authors":"Lukas Cornelius Wolter, Fabian Hennings, Jozef Bokor, Christian Richter, Kristin Stützer","doi":"10.1002/mp.17637","DOIUrl":"https://doi.org/10.1002/mp.17637","url":null,"abstract":"&lt;p&gt;&lt;strong&gt;Background: &lt;/strong&gt;Patient-specific quality assurance (PSQA) is a crucial yet resource-intensive task in proton therapy, requiring special equipment, expertise and additional beam time. Machine delivery log files contain information about energy, position and monitor units (MU) of all delivered spots, allowing a reconstruction of the applied dose. This raises the prospect of phantomless, log file-based QA (LFQA) as an automated replacement of current phantom-based solutions, provided that such an approach guarantees a comparable level of safety.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Purpose: &lt;/strong&gt;To retrieve a reliable LFQA conclusion from a one-time plan delivery before treatment initiation, deviations between planned and logged parameters must either be persistent over all following treatment fractions or, in case of random fluctuations, must not have a relevant impact on the reconstructed dose distribution. We therefore investigated the reproducibility of log file parameters over multiple patient treatment fractions and compared the reconstructed dose distributions.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Methods: &lt;/strong&gt;Log file variability was examined at both spot parameter and integral dose levels. The log files of 14 patient treatment plans were analyzed retrospectively for a total of 339 delivered fractions. From the recorded x/y position and MU parameters per spot, the respective mean difference to the planned value (accuracy) and the standard deviation (reproducibility) were calculated for 108,610 planned spots. The dose distributions reconstructed from the log files of each fraction were evaluated against the planned fraction dose using 3D gamma index analysis. The dose-based gamma pass rate &lt;math&gt;&lt;semantics&gt;&lt;mi&gt;Γ&lt;/mi&gt; &lt;annotation&gt;$Gamma$&lt;/annotation&gt;&lt;/semantics&gt; &lt;/math&gt; was correlated with a new spot-based log file pass rate &lt;math&gt;&lt;semantics&gt;&lt;mi&gt;Λ&lt;/mi&gt; &lt;annotation&gt;${Lambda}$&lt;/annotation&gt;&lt;/semantics&gt; &lt;/math&gt; . Beam timing information from the log files was used to quantify the total plan/field delivery time stability after excluding machine interlocks.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Results: &lt;/strong&gt;The mean spot-wise accuracy with respect to distance from planned positions and MUs was (0.6 ± 0.3) mm and (0.0001 ± 0.0023) MU, respectively. The mean reproducibility of the observed single spot deviations was (0.2 ± 0.1) mm and (0.0004 ± 0.0004) MU (mean ± standard deviation). These variations resulted in minimal changes in the reconstructed fraction dose with &lt;math&gt;&lt;semantics&gt;&lt;mi&gt;Γ&lt;/mi&gt; &lt;annotation&gt;${{Gamma}}$&lt;/annotation&gt;&lt;/semantics&gt; &lt;/math&gt; (2 mm/2%) &gt; 99% for all studied fractions. Results for more sensitive criteria &lt;math&gt;&lt;semantics&gt;&lt;mi&gt;Γ&lt;/mi&gt; &lt;annotation&gt;${{Gamma}}$&lt;/annotation&gt;&lt;/semantics&gt; &lt;/math&gt; (1 mm/1%) were plan-specific, but on average &gt; 92.6% per plan and correlated with &lt;math&gt;&lt;semantics&gt;&lt;mi&gt;Λ&lt;/mi&gt; &lt;annotation&gt;${{Lambda}}$&lt;/annotation&gt;&lt;/semantics&gt; &lt;/math&gt; (1 mm) pass rates (0.51 ≤ r&lt;sub&gt;Pearson&lt;/sub&gt; ≤ 0.99). Field delivery times were reproducible within ± 4 s (2σ) and ","PeriodicalId":94136,"journal":{"name":"Medical physics","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143054705","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Modeling absorbed alpha particle dose from diffusing alpha-emitters radiation therapy in changing tissue volumes.
Pub Date : 2025-01-27 DOI: 10.1002/mp.17646
Irene P Zhang, Guy Heger, Gil'ad N Cohen, Lior Arazi, Antonio L Damato

Background: Diffusing alpha-emitters Radiation Therapy ("Alpha DaRT") is a promising new radiation therapy modality for treating bulky tumors. 224Ra-carrying sources are inserted intratumorally, producing a therapeutic alpha-dose region with a total size of a few millimeter via the diffusive motion of 224Ra's alpha-emitting daughters. Clinical studies of Alpha DaRT have reported 100% positive response (30%-100% shrinkage within several weeks), with post-insertion swelling in close to half of the cases. While dosimetry recommendations informed by the effects of edema are standard in some radiation therapy modalities, the effect of edema and tumor shrinkage on the absorbed dose delivered by Alpha DaRT is still unknown.

Purpose: The aim of this work is to develop a simple model for Alpha-DaRT dose deposition in a time-dependent tissue volume in order to study the effect of geometrical changes in source location due to edema and tumor shrinkage on the delivered alpha particle dose.

Methods: We perform FEM-based dose deposition modeling for a single Alpha-DaRT source inside shrinking and swelling tissues. Gradual volume change models were used for shrinkage and swelling, and an additional immediate volume gain model was also used for "worst case" swelling. Volume change rates were estimated from source location data from serial scans acquired at time of insertion and removal for seven patients treated using Alpha DaRT. We calculate absorbed dose profiles under both the high- and low-diffusion regimes described by the Diffusion-Leakage model.

Results: Changes in tissue volume can lead to over- or underestimation of the calculated absorbed dose. In the low-diffusion regime, gradual tissue shrinkage can result in an increase of 100% and gradual swelling can result in a 35% decrease in absorbed dose compared to a calculation in static tissue. Although immediate post-insertion swelling can reduce the absorbed dose by close to 65% for very closely spaced sources, in all cases analyzed the final absorbed dose continues to exceed the 10 Gy target. These effects are less severe in the high-diffusion regime.

Conclusions: These results indicate that tissue swelling and shrinkage can have a non-negligible effect on the tumor absorbed dose. Further study of tissue dynamics during Alpha-DaRT treatment will be necessary for improvements in dosimetry practice.

{"title":"Modeling absorbed alpha particle dose from diffusing alpha-emitters radiation therapy in changing tissue volumes.","authors":"Irene P Zhang, Guy Heger, Gil'ad N Cohen, Lior Arazi, Antonio L Damato","doi":"10.1002/mp.17646","DOIUrl":"https://doi.org/10.1002/mp.17646","url":null,"abstract":"<p><strong>Background: </strong>Diffusing alpha-emitters Radiation Therapy (\"Alpha DaRT\") is a promising new radiation therapy modality for treating bulky tumors. <sup>224</sup>Ra-carrying sources are inserted intratumorally, producing a therapeutic alpha-dose region with a total size of a few millimeter via the diffusive motion of <sup>224</sup>Ra's alpha-emitting daughters. Clinical studies of Alpha DaRT have reported 100% positive response (30%-100% shrinkage within several weeks), with post-insertion swelling in close to half of the cases. While dosimetry recommendations informed by the effects of edema are standard in some radiation therapy modalities, the effect of edema and tumor shrinkage on the absorbed dose delivered by Alpha DaRT is still unknown.</p><p><strong>Purpose: </strong>The aim of this work is to develop a simple model for Alpha-DaRT dose deposition in a time-dependent tissue volume in order to study the effect of geometrical changes in source location due to edema and tumor shrinkage on the delivered alpha particle dose.</p><p><strong>Methods: </strong>We perform FEM-based dose deposition modeling for a single Alpha-DaRT source inside shrinking and swelling tissues. Gradual volume change models were used for shrinkage and swelling, and an additional immediate volume gain model was also used for \"worst case\" swelling. Volume change rates were estimated from source location data from serial scans acquired at time of insertion and removal for seven patients treated using Alpha DaRT. We calculate absorbed dose profiles under both the high- and low-diffusion regimes described by the Diffusion-Leakage model.</p><p><strong>Results: </strong>Changes in tissue volume can lead to over- or underestimation of the calculated absorbed dose. In the low-diffusion regime, gradual tissue shrinkage can result in an increase of 100% and gradual swelling can result in a 35% decrease in absorbed dose compared to a calculation in static tissue. Although immediate post-insertion swelling can reduce the absorbed dose by close to 65% for very closely spaced sources, in all cases analyzed the final absorbed dose continues to exceed the 10 Gy target. These effects are less severe in the high-diffusion regime.</p><p><strong>Conclusions: </strong>These results indicate that tissue swelling and shrinkage can have a non-negligible effect on the tumor absorbed dose. Further study of tissue dynamics during Alpha-DaRT treatment will be necessary for improvements in dosimetry practice.</p>","PeriodicalId":94136,"journal":{"name":"Medical physics","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143054695","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Optimization of x-ray dark-field CT for human-scale lung imaging.
Pub Date : 2025-01-27 DOI: 10.1002/mp.17630
Peiyuan Guo, Simon Spindler, Michal Rawlik, Jincheng Lu, Longchao Men, Mingzhi Hong, Marco Stampanoni, Hongxia Yin, Yan Xu, Zhenchang Wang, Li Zhang, Zhentian Wang

Background: X-ray grating-based dark-field imaging can sense the small angle scattering caused by object's micro-structures. This technique is sensitive to the porous microstructure of lung alveoli and has the potential to detect lung diseases at an early stage. Up to now, a human-scale dark-field CT (DF-CT) prototype has been built for lung imaging.

Purpose: This study aimed to develop a thorough optimization method for human-scale dark-field lung CT and guide the system design.

Methods: We introduced a task-based metric formulated as the contrast-to-noise ratio (CNR) between normal and lesioned alveoli for system parameter optimization and designed a digital human-thorax phantom to fit the task of lung disease detection. Furthermore, a computational framework was developed to model the signal propagation in DF-CT and established the link between system parameters and the CNR metric.

Results: We showed that for a DF-CT system, its CNR first increases and then decreases with the system auto-correlation length (ACL). The optimal ACL is mostly independent of system's visibility, and is only related to the phantom's properties, that is, its size and absorption. For our phantom, the optimal ACL is about 0.35 µm at the design energy of 60 keV. As for system geometry, increasing source-detector and isocenter-detector distance can extend the system's maximal ACL, making it easier for the system to meet the optimal ACL and relaxing the grating pitches. We proposed a set of parameters for a projective fringe system that can satisfy the simulated optimal ACL.

Conclusion: This study introduced a task-based metric and a process for DF-CT optimization. We demonstrated that for a given phantom, the detection performance of the system is optimized at a specific ACL. The optimization method and design principles are independent from the underlying dark-field imaging method and can be applied to DF-CT system design using different grating-based implementations such as Talbot-Lau interferometer (TLI) or projective fringe method.

{"title":"Optimization of x-ray dark-field CT for human-scale lung imaging.","authors":"Peiyuan Guo, Simon Spindler, Michal Rawlik, Jincheng Lu, Longchao Men, Mingzhi Hong, Marco Stampanoni, Hongxia Yin, Yan Xu, Zhenchang Wang, Li Zhang, Zhentian Wang","doi":"10.1002/mp.17630","DOIUrl":"https://doi.org/10.1002/mp.17630","url":null,"abstract":"<p><strong>Background: </strong>X-ray grating-based dark-field imaging can sense the small angle scattering caused by object's micro-structures. This technique is sensitive to the porous microstructure of lung alveoli and has the potential to detect lung diseases at an early stage. Up to now, a human-scale dark-field CT (DF-CT) prototype has been built for lung imaging.</p><p><strong>Purpose: </strong>This study aimed to develop a thorough optimization method for human-scale dark-field lung CT and guide the system design.</p><p><strong>Methods: </strong>We introduced a task-based metric formulated as the contrast-to-noise ratio (CNR) between normal and lesioned alveoli for system parameter optimization and designed a digital human-thorax phantom to fit the task of lung disease detection. Furthermore, a computational framework was developed to model the signal propagation in DF-CT and established the link between system parameters and the CNR metric.</p><p><strong>Results: </strong>We showed that for a DF-CT system, its CNR first increases and then decreases with the system auto-correlation length (ACL). The optimal ACL is mostly independent of system's visibility, and is only related to the phantom's properties, that is, its size and absorption. For our phantom, the optimal ACL is about 0.35 µm at the design energy of 60 keV. As for system geometry, increasing source-detector and isocenter-detector distance can extend the system's maximal ACL, making it easier for the system to meet the optimal ACL and relaxing the grating pitches. We proposed a set of parameters for a projective fringe system that can satisfy the simulated optimal ACL.</p><p><strong>Conclusion: </strong>This study introduced a task-based metric and a process for DF-CT optimization. We demonstrated that for a given phantom, the detection performance of the system is optimized at a specific ACL. The optimization method and design principles are independent from the underlying dark-field imaging method and can be applied to DF-CT system design using different grating-based implementations such as Talbot-Lau interferometer (TLI) or projective fringe method.</p>","PeriodicalId":94136,"journal":{"name":"Medical physics","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143054699","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Development of a CT radiomics prognostic model for post renal tumor resection overall survival based on transformer enhanced K-means clustering.
Pub Date : 2025-01-27 DOI: 10.1002/mp.17639
Yiren Wang, Yunfei Li, Shouying Chen, Zhongjian Wen, Yiheng Hu, Huaiwen Zhang, Ping Zhou, Haowen Pang

Background: Kidney tumors, common in the urinary system, have widely varying survival rates post-surgery. Current prognostic methods rely on invasive biopsies, highlighting the need for non-invasive, accurate prediction models to assist in clinical decision-making.

Purpose: This study aimed to construct a K-means clustering algorithm enhanced by Transformer-based feature transformation to predict the overall survival rate of patients after kidney tumor resection and provide an interpretability analysis of the model to assist in clinical decision-making.

Methods: This study was based on a publicly available C4KC-KiTS-2019 dataset from the TCIA database, including preoperative computed tomography (CT) images and survival time data of 210 patients. Initially, the radiomics features of the kidney tumor area were extracted using the 3D slicer software. Feature selection was then conducted using ICC, mRMR algorithms, and LASSO regression to calculate radiomics scores. Subsequently, the selected features were input into a pre-trained Transformer model for feature transformation to obtain a higher-dimensional feature set. Then, K-means clustering was performed using this feature set, and the model was evaluated using receiver operating characteristic (ROC) and Kaplan-Meier curves. Finally, the SHAP interpretability algorithm was used for the feature importance analysis of the K-means clustering results.

Results: Eleven important features were selected from 851 radiomics features. The K-means clustering model after Transformer feature transformation showed AUCs of 0.889, 0.841, and 0.926 for predicting 1-, 3-, and 5-year overall survival rates, respectively, thereby outperforming both the K-means model with original feature inputs and the radiomics score method. A clustering analysis revealed survival prognosis differences among different patient groups, and a SHAP analysis provided insights into the features that had the most significant impacts on the model predictions.

Conclusions: The K-means clustering algorithm enhanced by the Transformer feature transformation proposed in this study demonstrates promising accuracy and interpretability in predicting the overall survival rate after kidney tumor resection. This method provides a valuable tool for clinical decision-making and contributes to improved management and treatment strategies for patients with kidney tumors.

{"title":"Development of a CT radiomics prognostic model for post renal tumor resection overall survival based on transformer enhanced K-means clustering.","authors":"Yiren Wang, Yunfei Li, Shouying Chen, Zhongjian Wen, Yiheng Hu, Huaiwen Zhang, Ping Zhou, Haowen Pang","doi":"10.1002/mp.17639","DOIUrl":"https://doi.org/10.1002/mp.17639","url":null,"abstract":"<p><strong>Background: </strong>Kidney tumors, common in the urinary system, have widely varying survival rates post-surgery. Current prognostic methods rely on invasive biopsies, highlighting the need for non-invasive, accurate prediction models to assist in clinical decision-making.</p><p><strong>Purpose: </strong>This study aimed to construct a K-means clustering algorithm enhanced by Transformer-based feature transformation to predict the overall survival rate of patients after kidney tumor resection and provide an interpretability analysis of the model to assist in clinical decision-making.</p><p><strong>Methods: </strong>This study was based on a publicly available C4KC-KiTS-2019 dataset from the TCIA database, including preoperative computed tomography (CT) images and survival time data of 210 patients. Initially, the radiomics features of the kidney tumor area were extracted using the 3D slicer software. Feature selection was then conducted using ICC, mRMR algorithms, and LASSO regression to calculate radiomics scores. Subsequently, the selected features were input into a pre-trained Transformer model for feature transformation to obtain a higher-dimensional feature set. Then, K-means clustering was performed using this feature set, and the model was evaluated using receiver operating characteristic (ROC) and Kaplan-Meier curves. Finally, the SHAP interpretability algorithm was used for the feature importance analysis of the K-means clustering results.</p><p><strong>Results: </strong>Eleven important features were selected from 851 radiomics features. The K-means clustering model after Transformer feature transformation showed AUCs of 0.889, 0.841, and 0.926 for predicting 1-, 3-, and 5-year overall survival rates, respectively, thereby outperforming both the K-means model with original feature inputs and the radiomics score method. A clustering analysis revealed survival prognosis differences among different patient groups, and a SHAP analysis provided insights into the features that had the most significant impacts on the model predictions.</p><p><strong>Conclusions: </strong>The K-means clustering algorithm enhanced by the Transformer feature transformation proposed in this study demonstrates promising accuracy and interpretability in predicting the overall survival rate after kidney tumor resection. This method provides a valuable tool for clinical decision-making and contributes to improved management and treatment strategies for patients with kidney tumors.</p>","PeriodicalId":94136,"journal":{"name":"Medical physics","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143054570","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Medical physics
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