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Synthesis of Glycosylated 3-(3-Amino-3-carboxypropyl)uridine: A Minimum Unit of GlycoRNA. 糖基化3-(3-氨基-3-羧基丙基)尿苷的合成:GlycoRNA的最小单位。
IF 1.5 4区 医学 Q4 CHEMISTRY, MEDICINAL Pub Date : 2025-01-01 DOI: 10.1248/cpb.c25-00091
Kazuyuki Ishii, Hikaru Yarita, Shino Manabe

N-Glycosylated RNA (glycoRNA) has been identified on the cell surface, and 3-(3-amino-3-carboxypropyl)uridine has been reported as a conjugation site of N-glycans on RNA. Although the association of glycoRNAs with various diseases has been reported, their biosynthetic mechanisms and biological roles remain unexplored. Here, we report the preparation of two species of N-glycan-conjugated 3-(3-amino-3-carboxypropyl)uridine as the minimal units of glycoRNA. Our synthesized glycoRNA unit would contribute to future biochemical research on glycoRNAs.

n -糖基化RNA (glycoRNA)已经在细胞表面被鉴定出来,3-(3-氨基-3-羧基丙基)尿苷被报道为n -聚糖在RNA上的结合位点。尽管glycorna与多种疾病的关联已被报道,但其生物合成机制和生物学作用仍未被探索。在这里,我们报道了两种n-聚糖缀合的3-(3-氨基-3-羧基丙基)尿苷作为glycoRNA的最小单位的制备。我们合成的glycoRNA单元将为今后glycoRNA的生化研究做出贡献。
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引用次数: 0
Synthesis of the Tricyclic ABC-Ring System of Veratridine. 缬曲啶三环abc环体系的合成。
IF 1.5 4区 医学 Q4 CHEMISTRY, MEDICINAL Pub Date : 2025-01-01 DOI: 10.1248/cpb.c25-00156
Keita Shiono, Keisuke Fukaya, Ayami Amano, Daisuke Urabe

Veratridine is a neurotoxic compound classified into the cevanine group of the Veratrum alkaloids and is characterized by its highly functionalized hexacyclic structure. Here, we report the synthesis of the ABC-ring system of veratridine from a known cis-decalin. The cis-decalin was synthesized from 1,5-pentanediol by modification of a literature method. A site-selective acylation of the C3-hydroxy group with 3,4-dimethoxybenzoyl chloride, a chemo- and stereoselective (allyl)2Zn-mediated C9-allylation, and ring closing metathesis were employed as key transformations to construct the ABC-ring system of veratridine.

缬曲啶是一种神经毒性化合物,属于缬曲啶类生物碱的切瓦氨酸类,具有高度官能化的六环结构。本文报道了以已知的顺式十氢化萘为原料合成缬草碱的abc环体系。以1,5-戊二醇为原料,对文献方法进行了改进,合成了顺式十氢化萘。以3,4-二甲氧基苯甲酰氯对c3 -羟基的选择性酰基化、化学和立体选择性(烯丙基)2zn介导的c9 -烯丙基化和环闭合复分解为关键转化,构建了缬草碱的abc -环体系。
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引用次数: 0
Synthesis of [1-13C]2-Oxoglutaric Acid and 13C Breath Tests Designed to Assess TCA Cycle Flux. [1-13C]2-氧戊二酸的合成及13C呼吸试验评估TCA循环通量
IF 1.3 4区 医学 Q4 CHEMISTRY, MEDICINAL Pub Date : 2025-01-01 DOI: 10.1248/cpb.c25-00400
Hidemichi Mitome, Kiyoshi Miura, Tomihiro Miyada, Ginjiro Kato, Mieko Takenishi, Kumiko Ono, Nanami Torada, Honoka Kutsuna, Kazuki Akira

Several approaches for synthesizing [1-13C]2-oxoglutaric acid were attempted, and the synthesis was successfully achieved in 4 steps from trimethylsilyl 13C-cyanide. The 13C-breath tests on rats were conducted by orally administering the newly synthesized [1-13C]2-oxoglutaric acid, the previously prepared [1'-13C]citric acid, and [1-13C]acetic acid as a control drug, and the results were compared. The results indicate that [1-13C]2-oxoglutaric acid and [1'-13C]citric acid may serve as potential substrates for assessing the TCA cycle flux.

尝试了几种合成[1-13C]2-氧戊二酸的方法,并以三甲基硅基13c -氰化物为原料,通过4步合成成功。将新合成的[1-13C]2-氧戊二酸、先前制备的[1'-13C]柠檬酸、[1-13C]乙酸作为对照药口服给药,对大鼠进行13c呼吸试验,并比较结果。结果表明,[1-13C]2-氧己二酸和[1'-13C]柠檬酸可作为评价TCA循环通量的潜在底物。
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引用次数: 0
Photo-Enhanced Aqueous Solubilization of Azobenzene-Incorporated Lipids. 偶氮苯脂类的光增强水溶液增溶作用。
IF 1.5 4区 医学 Q4 CHEMISTRY, MEDICINAL Pub Date : 2025-01-01 DOI: 10.1248/cpb.c25-00252
Shusuke Tomoshige, Yushi Kawasaki, Junki Morimoto, Naohiro Sato, Yuichi Hashimoto, Minoru Ishikawa

Lipids, including fatty acids and phospholipids, play crucial roles in biological systems and are widely utilized in pharmaceutical and biomedical applications. However, their inherent hydrophobicity poses significant challenges for formulation and administration. In this study, we aimed to enhance the aqueous solubility of lipidic compounds by leveraging light-responsive molecular design. We synthesized azo-lipids by incorporating azobenzene units into a fatty acid and phosphatidylcholine, hypothesizing that light-induced trans-cis isomerization would improve solubility. The synthesized compounds exhibited reversible photoisomerization upon alternating UV (365 nm) and visible light irradiation, as confirmed by UV-vis spectroscopy and reverse-phase HPLC. The solubilization of these azo-lipids was quantified under UV-unirradiated and irradiated conditions. Azobenzene-incorporated phosphatidylcholine 2 exhibited a drastic increase in solubilization from 2.030 to 1008 µM (496-fold) after UV irradiation. This significant improvement was attributed to efficient photoisomerization and molecular bending in the cis, cis conformation, reducing intermolecular interactions. Our findings suggest that this on-demand aqueous solubilization strategy offers a novel approach for improving the handling, storage, and potential therapeutic administration of lipid-based compounds.

脂类,包括脂肪酸和磷脂,在生物系统中起着至关重要的作用,广泛应用于制药和生物医学领域。然而,它们固有的疏水性给配方和管理带来了重大挑战。在这项研究中,我们旨在通过光响应分子设计来提高脂质化合物的水溶性。我们通过将偶氮苯单元结合到脂肪酸和磷脂酰胆碱中来合成偶氮脂,并假设光诱导的反式顺式异构化会提高溶解度。紫外-可见光谱和反相高效液相色谱证实,在所合成的化合物在紫外(365 nm)和可见光交替照射下表现出可逆的光异构化。测定了这些偶氮脂在紫外辐照和紫外辐照条件下的增溶作用。偶氮苯掺入的磷脂酰胆碱2在紫外照射下的增溶量从2.030µM急剧增加到1008µM(496倍)。这种显著的改善是由于有效的光异构化和顺式、顺式构象中的分子弯曲,减少了分子间的相互作用。我们的研究结果表明,这种按需水溶液增溶策略为改善脂基化合物的处理、储存和潜在的治疗管理提供了一种新的方法。
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引用次数: 0
Bioinspired Total Synthesis of Polycyclic Natural Products. 多环天然产物的生物启发全合成。
IF 1.5 4区 医学 Q4 CHEMISTRY, MEDICINAL Pub Date : 2025-01-01 DOI: 10.1248/cpb.c24-00843
Hayato Ishikawa

Despite the great strides in biopharmaceuticals and monoclonal antibodies today, natural products remain highly attractive as drug candidates. Therefore, building a library of natural products through total synthesis is critically important for drug discovery. This perspective article details the collective total synthesis of polycyclic natural products using "bioinspired reactions" that mimic natural product biosynthesis. It discusses the total syntheses of 20 natural products, including dimeric diketopiperazine alkaloids, monoterpenoid indole alkaloids, and iridoid glycosides, each achieved in fewer than 14 steps starting from commercially available materials.

尽管生物制药和单克隆抗体在今天取得了巨大的进步,但天然产物作为候选药物仍然具有很高的吸引力。因此,通过全合成建立天然产物库对药物发现至关重要。这篇透视文章详细介绍了利用“生物启发反应”模拟天然产物生物合成的多环天然产物的集体全合成。它讨论了20种天然产物的总合成,包括二聚体二酮哌嗪生物碱、单萜类吲哚生物碱和环烯醚萜苷,每一种都从商业上可用的材料开始,在不到14步的时间内完成。
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引用次数: 0
Total Synthesis and Antibacterial Activity of 5-Geranyloxy-7-hydroxycoumarin and Murrayacoumarin A. 5-香叶氧基-7-羟基香豆素和木耳香豆素A的合成及抗菌活性研究
IF 1.5 4区 医学 Q4 CHEMISTRY, MEDICINAL Pub Date : 2025-01-01 DOI: 10.1248/cpb.c25-00127
Takahito Kuribara, Honoka Yuba, Hina Saito, Akiko Takaya, Masami Ishibashi, Tetsuhiro Nemoto

Coumarins are widely found in medicinal plants and exhibit diverse biological properties, including antibacterial activities. Herein, we report the total synthesis of 5-geranyloxy-7-hydroxycoumarin, 5-geranyloxy-7-methoxycoumarin, and Murrayacoumarin A. The asymmetric synthesis of (+)-Murrayacoumarin A was achieved via regioselective asymmetric dihydroxylation, allowing the determination of absolute configuration at the C7'-position. In addition, the antibacterial activities of the synthesized natural products and their derivatives were evaluated.

香豆素广泛存在于药用植物中,具有多种生物学特性,包括抗菌活性。本文报道了5-香叶氧基-7-羟基香豆素、5-香叶氧基-7-甲氧基香豆素和Murrayacoumarin A的全合成。(+)-Murrayacoumarin A的不对称合成是通过区域选择性不对称二羟基化实现的,可以确定C7'-位置的绝对构型。此外,还对合成的天然产物及其衍生物的抗菌活性进行了评价。
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引用次数: 0
Terminalagin, a New Ellagitannin from Kakadu Plum (Terminalia ferdinandiana). 来自Kakadu Plum (Terminalia ferdinandiana)的一种新鞣花单宁。
IF 1.3 4区 医学 Q4 CHEMISTRY, MEDICINAL Pub Date : 2025-01-01 DOI: 10.1248/cpb.c25-00402
Kohei Fujita, Mitsuharu Masuda, Mano Horinaka, Mie Morita, Shoko Mori, Yoshihide Matsuo, Toshiyuki Sakai

Kakadu plum (Terminalia ferdinandiana) reportedly has the highest ascorbic acid levels of all plants worldwide and its juice reactivates functions of the retinoblastoma gene (RB) product, a tumor suppressor gene. In this study, the juice of the Kakadu plum was fractionated to identify the constituent active compounds. A novel ellagitannin, named terminalagin, was isolated from Kakadu plum (Terminalia ferdinandiana) juice via bioassay-guided isolation. The structure was determined using spectroscopic analysis and partial hydrolysis. Terminalagin has a corilagin substructure and a 2,4-(S)-hexahydroxydiphenoyl (HHDP) ester moiety that is not usually found in natural products. The results of this study enrich the structural database of ellagitannins and should provide invaluable aid for their further utilization in cancer prevention.

据报道,卡卡杜梅(Terminalia ferdinandiana)具有世界上所有植物中最高的抗坏血酸水平,其汁液可重新激活视网膜母细胞瘤基因(RB)产物的功能,这是一种肿瘤抑制基因。本研究对Kakadu李子的汁液进行了分离,以鉴定其有效成分。采用生物测定法从卡卡杜梅(Kakadu plum, Terminalia ferdinandiana)果汁中分离到一种新的鞣花单宁,命名为terminalagin。通过光谱分析和部分水解测定了其结构。Terminalagin具有胶原蛋白亚结构和2,4-(S)-六羟基二酚(HHDP)酯部分,这在天然产物中通常不存在。本研究的结果丰富了鞣花单宁的结构数据库,为其在癌症预防中的进一步应用提供了宝贵的帮助。
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引用次数: 0
Development of a Sustainable One-Pot Process for Esomeprazole Production via Enantioselective Iron Catalysis. 对映选择性铁催化可持续一锅法生产埃索美拉唑的研究。
IF 1.3 4区 医学 Q4 CHEMISTRY, MEDICINAL Pub Date : 2025-01-01 DOI: 10.1248/cpb.c25-00470
Shigenobu Nishiguchi, Junpei Sukegawa, Takuma Onai, Takuhiro Izumi, Tatsuya Komori, Satoshi Aoki, Laurean Ilies, Eiichi Nakamura

For the production of active pharmaceutical ingredients through sustainable organic synthesis, the use of inexpensive and non-toxic catalysts is desirable. Recently, homogeneous chiral Fe catalysts have received considerable attention as tools for achieving this goal. However, chiral Fe catalysts often perform poorly when used to synthesize complex molecules, limiting their application to large-scale syntheses. In this study, we developed an asymmetric sulfoxidation reaction for the production of esomeprazole at a pilot-plant scale. The reaction uses a catalytic system generated in situ from an Fe salt, which is abundant, inexpensive, and environmentally friendly, combined with a chiral Schiff ligand and a carboxylate salt, and hydrogen peroxide as the oxidant. Subsequently, the obtained esomeprazole is converted from its K-salt form to an Mg-salt, thereby establishing a manufacturing process that yields high-purity active pharmaceutical ingredients with impurities controlled to less than 0.05%. The enantioselectivity and kinetic resolution of the asymmetric sulfoxidation reaction are dependent on the spatial relationship between the sp3-hybridization center and the sp2 carbon adjacent to the substituent attached to the S atom of the substrate. We also speculate that the carboxylic acid additive plays a critical role in activating hydrogen peroxide through heterolytic cleavage and enabling the formation of both mono- and dinuclear iron oxidants. Furthermore, we propose a catalytic mechanism for this enantioselective oxidation reaction.

为了通过可持续的有机合成生产活性药物成分,使用廉价无毒的催化剂是可取的。近年来,均相手性Fe催化剂作为实现这一目标的工具受到了广泛的关注。然而,手性Fe催化剂在合成复杂分子时往往表现不佳,限制了其在大规模合成中的应用。在这项研究中,我们在中试工厂规模上开发了一种不对称亚砜化反应来生产埃索美拉唑。该反应使用的催化体系是由丰富、廉价、环保的铁盐与手性席夫配体和羧酸盐结合,过氧化氢作为氧化剂原位生成的。随后,将得到的埃索美拉唑从其k盐形式转化为mg盐,从而建立了一种生产工艺,该工艺可生产出杂质控制在0.05%以下的高纯度活性药物成分。不对称亚砜化反应的对映选择性和动力学分辨率取决于sp3杂化中心与底物S原子上取代基相邻的sp2碳之间的空间关系。我们还推测羧酸添加剂在通过异裂裂解激活过氧化氢和形成单核和双核铁氧化剂方面起着关键作用。此外,我们提出了这种对映选择性氧化反应的催化机制。
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引用次数: 0
Development of Biological-Event Manipulators Triggered by Light-Activated Compounds. 光激活化合物触发生物事件操纵器的研制。
IF 1.3 4区 医学 Q4 CHEMISTRY, MEDICINAL Pub Date : 2025-01-01 DOI: 10.1248/cpb.c25-00503
Naoya Ieda

Photoresponsive molecular tools have become powerful platforms for manipulating biological functions with high spatiotemporal precision. In this review, we highlight recent advances in the development of light-activated compounds that interact with key signaling molecules and microenvironments. Inspired by various chemical reactions triggered by light-matter interactions, this review covers three representative systems: photoactivatable peroxynitrite (ONOO-) generators, visible-light-driven nitric oxide (NO) releasers, and optochemical oxygen (O2) scavengers. ONOO-, a reactive nitrogen species formed from NO and superoxide (O2-), plays a critical role in protein nitration and cellular oxidative stress. By designing molecules that generate both NO and O2- upon light exposure, efficient ONOO- release was achieved and used to induce nitration reactions. For NO manipulation, the authors developed a class of photoresponsive releasers that utilize photoinduced electron transfer (PeT) to enable blue-to-red light-triggered NO release. These photoresponsive releasers allowed optical control of vasodilation both ex vivo and in vivo, which forms the basis of a minimally invasive approach to modulate blood flow. In addition, a light-responsive O2 scavenger was developed to induce localized hypoxia in cell cultures. The light-responsive O2 scavenger enabled optical regulation of the hypoxia-responsive pathway and activation of the transient receptor potential ankyrin 1 (TRPA1) calcium channel, which underscores the utility of this approach. Together, these studies illustrate how rational molecular design, combined with precise photochemical control, can create innovative systems for probing and directing biological events. These technologies are valuable as both a basic research tool and for potential future therapeutic applications.

光响应分子工具已成为高时空精度操纵生物功能的有力平台。在这篇综述中,我们重点介绍了与关键信号分子和微环境相互作用的光激活化合物的最新进展。受光-物质相互作用引发的各种化学反应的启发,本文综述了三种具有代表性的系统:光活化过氧亚硝酸盐(ONOO-)发生器、可见光驱动一氧化氮(NO)释放剂和光化学氧(O2)清除剂。ONOO-是一种由NO和超氧化物(O2-)形成的活性氮,在蛋白质硝化和细胞氧化应激中起关键作用。通过设计在光照下同时产生NO和O2-的分子,实现了ONOO-的有效释放,并用于诱导硝化反应。对于NO操纵,作者开发了一类光响应释放剂,利用光诱导电子转移(PeT)来实现蓝光到红光触发的NO释放。这些光反应释放剂允许体外和体内血管舒张的光学控制,这构成了调节血流的微创方法的基础。此外,开发了一种光响应性O2清除剂来诱导细胞培养中的局部缺氧。光响应性O2清除剂实现了缺氧响应途径的光学调节和瞬时受体电位锚蛋白1 (TRPA1)钙通道的激活,这强调了该方法的实用性。总之,这些研究说明了合理的分子设计,结合精确的光化学控制,可以创建探测和指导生物事件的创新系统。这些技术作为基础研究工具和潜在的未来治疗应用都是有价值的。
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引用次数: 0
Crystal Structure and Physical Properties of Loxoprofen Sodium Dihydrate. 洛索洛芬二水合钠的晶体结构和物理性质。
IF 1.3 4区 医学 Q4 CHEMISTRY, MEDICINAL Pub Date : 2025-01-01 DOI: 10.1248/cpb.c25-00443
Masataka Ito, Hironori Suzuki, Shuji Noguchi

The crystal structure and physicochemical properties of loxoprofen sodium dihydrate (LOX-Na 2hyd), a widely used antipyretic analgesic, were investigated. Single crystals were successfully prepared, and their structure was determined via single-crystal X-ray diffraction. The crystals featured alternating hydrophilic and hydrophobic layers: the hydrophilic layer contained water molecules and sodium ions forming coordination and hydrogen bonds, while the hydrophobic layer contained loxoprofen molecules. Thermal analysis revealed that LOX-Na 2hyd desolvated two water molecules at approximately 60°C, dehydrating into an anhydrate without passing through the amorphous state. This anhydrate reabsorbed moisture at approximately 25% relative humidity, reverting to the dihydrate form. Dynamic vapor sorption confirmed the stability of the dihydrate across a wide humidity range. The cyclopentanone ring in the LOX structure exhibited disorder, and crystallographic analysis indicated the coexistence of four stereoisomers (5R, 13R; 5S, 13S; 5R, 13S; 5S, 13R). These findings suggest structural flexibility and potential relevance for optical resolution. Because optical resolution enhances the efficacy of other drugs, such as omeprazole and ofloxacin, this study provides valuable structural insight to support similar applications for LOX. Overall, this work contributes foundational knowledge toward improving the stability and efficacy of LOX formulations through structural and physicochemical understanding.

研究了广泛应用的解热镇痛药洛索洛芬二水合钠(loxoprofen sodium dihydrate, lox - na2hyd)的晶体结构和理化性质。成功制备了单晶,并通过单晶x射线衍射测定了其结构。晶体具有亲疏水层交替存在的特点:亲水性层含有水分子和钠离子形成配位和氢键,疏水性层含有洛索洛芬分子。热分析表明,lox - na2hyd在约60℃的温度下溶解了两个水分子,在不通过无定形状态的情况下脱水成无水化合物。这种无水化合物在大约25%的相对湿度下再吸收水分,恢复为二水化合物的形式。动态水蒸气吸附证实了二水合物在很宽的湿度范围内的稳定性。LOX结构中的环戊酮环表现出无序性,晶体学分析表明存在4种立体异构体(5R, 13R; 5S, 13S; 5R, 13S; 5S, 13R)。这些发现表明了结构的灵活性和光学分辨率的潜在相关性。由于光学分辨率提高了其他药物的疗效,如奥美拉唑和氧氟沙星,本研究为支持LOX的类似应用提供了有价值的结构见解。总的来说,这项工作通过结构和物理化学的理解,为提高LOX配方的稳定性和有效性提供了基础知识。
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引用次数: 0
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