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A procedure for meaningful unsupervised clustering and its application for solvent classification 一种有意义的无监督聚类方法及其在溶剂分类中的应用
Pub Date : 2014-02-21 DOI: 10.2478/s11532-014-0514-6
Yaroslava Pushkarova, Y. Kholin
AbstractArtificial neural networks have proven to be a powerful tool for solving classification problems. Some difficulties still need to be overcome for their successful application to chemical data. The use of supervised neural networks implies the initial distribution of patterns between the pre-determined classes, while attribution of objects to the classes may be uncertain. Unsupervised neural networks are free from this problem, but do not always reveal the real structure of data. Classification algorithms which do not require a priori information about the distribution of patterns between the pre-determined classes and provide meaningful results are of special interest. This paper presents an approach based on the combination of Kohonen and probabilistic networks which enables the determination of the number of classes and the reliable classification of objects. This is illustrated for a set of 76 solvents based on nine characteristics. The resulting classification is chemically interpretable. The approach proved to be also applicable in a different field, namely in examining the solubility of C60 fullerene. The solvents belonging to the same group demonstrate similar abilities to dissolve C60. This makes it possible to estimate the solubility of fullerenes in solvents for which there are no experimental data
摘要人工神经网络已被证明是解决分类问题的有力工具。它们要成功地应用于化学数据,还需要克服一些困难。监督神经网络的使用意味着预先确定的类别之间模式的初始分布,而对象归属于类别可能是不确定的。无监督神经网络不存在这个问题,但并不总能揭示数据的真实结构。不需要预先确定的类之间的模式分布的先验信息并提供有意义的结果的分类算法是特别有趣的。本文提出了一种基于Kohonen和概率网络相结合的方法,可以确定目标的类数和可靠分类。这是基于九种特性的一组76种溶剂的例子。由此产生的分类在化学上是可以解释的。该方法被证明也适用于另一个领域,即检测C60富勒烯的溶解度。同属一类的溶剂溶解C60的能力相似。这使得估计富勒烯在没有实验数据的溶剂中的溶解度成为可能
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引用次数: 8
Surface plasmon resonance imaging biosensors for aromatase based on a potent inhibitor and a specific antibody: Sensor development and application for biological material 基于有效抑制剂和特异性抗体的芳香化酶表面等离子体共振成像生物传感器:生物材料传感器的开发与应用
Pub Date : 2014-02-21 DOI: 10.2478/s11532-014-0512-8
E. Gorodkiewicz, A. Sankiewicz, P. Laudański
AbstractAromatase (ARO) is an enzyme with potential diagnostic significance. Aberrant expression of aromatase in tissues is associated with a number of pathological conditions, including tumor of the breast, ovary, testes, liver, adrenal cortex and uterus, as well as endometriosis.Two methods for the highly selective determination of ARO concentration in human tissues by using of two different biosensors co-operating with the surface plasmon resonance imaging technique (SPRI) have been developed. One of the developed biosensors contains immobilised rabbit polyclonal antibody specific for aromatase (Y-ARO), while the other contains immobilized ARO inhibitor-exemestane (E-ARO). Both biosensors specifically bound ARO from analyzed samples. The analytically useful dynamic response range of both biosensors is between 0.3 and 5.0 ng mL−1. The detection limit (3S.D.) of both biosensors is 90 pg mL−1. Standard deviation of both biosensors is 1%. Recoveries of ARO spikes are between 97 and 108% for both biosensors under model conditions and for real samples. Albumin and alkaline phosphatase are tolerated for both biosensors up to 10,000 fold excess.
摘要:纤维素酶(ARO)是一种具有潜在诊断意义的酶。芳香化酶在组织中的异常表达与许多病理状况有关,包括乳腺、卵巢、睾丸、肝脏、肾上腺皮质和子宫的肿瘤,以及子宫内膜异位症。利用两种不同的生物传感器与表面等离子体共振成像技术(SPRI)合作,开发了两种高选择性测定人体组织中ARO浓度的方法。其中一种生物传感器含有固定化兔特异性芳香化酶多克隆抗体(Y-ARO),另一种生物传感器含有固定化芳香化酶抑制剂依西美坦(E-ARO)。这两种生物传感器都能从分析的样品中特异性地结合ARO。两种生物传感器的分析有用的动态响应范围在0.3和5.0 ng mL−1之间。两种生物传感器的检测限(3sd)均为90 pg mL−1。两种生物传感器的标准偏差均为1%。在模型条件下和实际样品中,生物传感器的ARO峰值回收率在97 - 108%之间。白蛋白和碱性磷酸酶对这两种生物传感器的耐受性高达10,000倍。
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引用次数: 26
Regio- and stereoselectivity of polar [2+3] cycloaddition reactions between (Z)-C-(3,4,5-trimethoxyphenyl)-N-methylnitrone and selected (E)-2-substituted nitroethenes (Z)- c -(3,4,5-三甲氧基苯基)- n -甲基硝酮与(E)-2-取代亚硝基之间极性[2+3]环加成反应的区域选择性和立体选择性
Pub Date : 2014-02-21 DOI: 10.2478/s11532-014-0518-2
R. Jasiński, Magda Ziółkowska, O. Demchuk, Agata Maziarka
Abstract[2+3] Cycloaddition reactions of the highly reactive (Z)-C-(3,4,5-trimethoxyphenyl)-N-methylnitrone with (E)-2-R-nitroethenes proceed under mild conditions and yield mixtures of stereoisomeric 2-methyl-3-(3,4,5-trimethoxyphenyl)-4-nitro-5-R-isoxazolidines. The effect of regiospecificity of the cycloadditions may be accounted for by the theory of electrophilicity indexes. Stereoselectivity, however, is determined by a compilation of steric and secondary orbital effects.
摘要[2+3]高活性(Z)- c -(3,4,5-三甲氧基苯基)- n -甲基硝基酮与(E)-2- r -亚硝基苯基)在温和条件下进行环加成反应,得到立体异构体2-甲基-3-(3,4,5-三甲氧基苯基)-4-硝基-5- r -异恶唑烷的混合物。环加成的区域特异性可以用亲电性指数理论来解释。然而,立体选择性是由空间和次级轨道效应的综合决定的。
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引用次数: 55
Experimental and theoretical studies on the photodegradation of 2-ethylhexyl 4-methoxycinnamate in the presence of reactive oxygen and chlorine species 活性氧和氯存在下2-乙基己基4-甲氧基肉桂酸光降解的实验和理论研究
Pub Date : 2014-02-21 DOI: 10.2478/s11532-014-0522-6
Alicja Gackowska, Maciej Przybyłek, W. Studziński, J. Gaca
Abstract2-Ethylhexyl 4-methoxycinnamate (EHMC) is one of the most commonly used sunscreen ingredient. In this study we investigated photodegradation of EHMC in the presence of such common oxidizing and chlorinating systems as H2O2, H2O2/HCl, H2O2/UV, and H2O2/HCl/UV. Reaction products were detected by gas chromatography with a mass spectrometric detector (GC-MS). As a result of experimental studies chloro-substituted 4-methoxycinnamic acid (4-MCA), 4-methoxybenzaldehyde (4-MBA) and 4-methoxyphenol (4-MP) were identified. Experimental studies were enriched with DFT and MP2 calculations. We found that reactions of 4-MCA, 4-MBA and 4-MP with Cl2 and HOCl were in all cases thermodynamically favorable. However, reactivity indices provide a better explanation of the formation of particular chloroorganic compounds. Generally, those isomeric forms of mono- and dichlorinated compounds which exhibits the highest hardness were identified. Nucleophilicity of the chloroorganic compounds precursors were examined by means of the Fukui function.
摘要乙己基4-甲氧基肉桂酸酯(EHMC)是最常用的防晒成分之一。在这项研究中,我们研究了在H2O2、H2O2/HCl、H2O2/UV和H2O2/HCl/UV等常见氧化和氯化体系存在下EHMC的光降解。反应产物采用气相色谱-质谱检测器(GC-MS)检测。通过实验鉴定了氯取代4-甲氧基肉桂酸(4-MCA)、4-甲氧基苯甲醛(4-MBA)和4-甲氧基苯酚(4-MP)。DFT和MP2计算丰富了实验研究。我们发现4-MCA, 4-MBA和4-MP与Cl2和HOCl的反应在热力学上都是有利的。然而,反应性指数对特定氯有机化合物的形成提供了更好的解释。一般来说,鉴定出硬度最高的单氯和二氯化合物的同分异构体。用福井函数法研究了含氯有机化合物前体的亲核性。
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引用次数: 32
TOF-SIMS surface analysis of L-Tryptophan self assembled monolayer l -色氨酸自组装单层的TOF-SIMS表面分析
Pub Date : 2014-02-21 DOI: 10.2478/s11532-014-0515-5
M. Petrovic, I. Talian, Lenka Škantárová, A. Oriňak, D. Velic
AbstractThis paper dealt with the preparation and characterization of self — assembled monolayersSAM-s of 1-hexadecanethiole and mercapto acetic acid on the silver nanostructure and subsequently the immobilization with amino acid L-Tryptophane. In order to achieve it, we used the electrodeposition of silver onto nanostructured surface of paraffin impregnated graphite electrode (PIGE). Subsequently, we assembled SAM by choosing the 1-hexadecanethiole and mercaptoacetic acid. These two kinds of SAM underwent the functionalization by L-Tryptophan. The observations of silver on PIGE surfaces were performed by scanning electron microscope (SEM). For surface analysis of the SAM functionalized by L-tryphophan, the TOF-SIMS technique was chosen. Finally, the fragmented ions of the immobilized-L-Tryptophan SAM were determined on the basis of suggested residues and three-dimensional structure. The residues show that the ability of L-Tryptophan to build homogeneous structure is better by mercaptoacetic acid SAM structure than by 1-hexadecanethiol. It was observed that L-Tryptophan built compact surface, which, due its chemical properties, can represent very interesting side regarding biocompatibility, homochirality and robustness in the area of life science.
摘要本文研究了银纳米结构上1-十六硫醇和巯基乙酸自组装单分子膜sam -s的制备和表征,并利用l -色氨酸进行了固定。为此,我们采用了在石蜡浸渍石墨电极(PIGE)的纳米结构表面电沉积银的方法。随后,我们通过选择1-十六烷硫醇和巯基乙酸来组装SAM。这两种SAM均被l -色氨酸功能化。用扫描电镜(SEM)观察了银在PIGE表面的分布。采用TOF-SIMS技术对l -色氨酸功能化的SAM进行表面分析。最后,根据建议残基和三维结构确定了固定化l -色氨酸SAM的碎片离子。残基分析表明,巯基乙酸对l -色氨酸形成均一结构的作用优于对1-十六烷硫醇的作用。l -色氨酸构建了致密表面,由于其化学性质,它在生物相容性、同手性和鲁棒性等方面在生命科学领域具有非常重要的意义。
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引用次数: 0
50 years of superbases made from organolithium compounds and heavier alkali metal alkoxides 50年来由有机锂化合物和较重的碱金属醇氧化物制成的超碱
Pub Date : 2014-02-21 DOI: 10.2478/s11532-014-0528-0
L. Lochmann, M. Janata
AbstractA review of reactions of organolithium compounds (RLi) with alkali metal alkoxides is presented. On the one hand, simple lithium alkoxides form adducts with RLi the reactivity of which differs only slightly from that of RLi. On the other hand, after mixing heavier alkali metal alkoxides (R’OM, M = Na, K, Rb, Cs) with RLi, a new system is formed, which has reactivity that dramatically exceeds that of the parent RLi. A metal interchange, according to the equation RLi + R’OM = RM + R’OLi, occurs in this system, giving rise to a superbase. This reaction is frequently used for the preparation of heavier alkali metal organometallic compounds. Similar metal interchange takes place between R’OM and compounds such as lithium amides and lithium enolates of ketones or esters, thus demonstrating the general nature of this procedure. Superbases react easily with many types of organic compounds (substrates), resulting in the formation of a heavier alkali metal derivative of the substrate (metalation). The metalated substrate can react in situ with an electrophile to yield the substituted substrate, a procedure that is frequently used in synthetic and polymer chemistry. An improved mechanism of metal interchange and reaction of superbases with substrates is proposed.
摘要综述了有机锂化合物(RLi)与碱金属烷氧化物的反应。一方面,简单的锂烷氧化物与RLi形成加合物,其反应活性与RLi仅略有不同。另一方面,较重的碱金属烷氧化物(R 'OM, M = Na, K, Rb, Cs)与RLi混合后,形成新的体系,其反应活性大大超过母体RLi。根据方程RLi + R 'OM = RM + R 'OLi,在该体系中发生了金属交换,产生了超碱。该反应常用于制备较重的碱金属有机金属化合物。类似的金属交换也发生在R 'OM和化合物之间,如锂酰胺和锂烯醇化酮或酯,从而证明了该过程的一般性质。超碱很容易与许多类型的有机化合物(底物)反应,导致底物形成较重的碱金属衍生物(金属化)。金属化底物可以在原位与亲电试剂反应生成取代底物,这一过程经常用于合成和聚合物化学。提出了一种改进的金属交换和超碱与底物反应机理。
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引用次数: 44
Microwave assisted extraction of essential oils from enzymatically pretreated lavender (Lavandula angustifolia Miller) 微波辅助萃取酶处理薰衣草精油的研究
Pub Date : 2014-02-20 DOI: 10.2478/s11532-014-0532-4
I. Călinescu, A. Gavrila, M. Ivopol, G. Ivopol, M. Popescu, Nectara Mircioaga
In this study, microwave assisted a hydrodistillation process (MWHD) of essential oils from lavender (Lavandula angustifolia Miller) was investigated. In order to examine any potential differences in essential oil extraction, the lavender flowers underwent enzymatic pretreatment.A 23 factorial design of experiments, combined with statistical methods of data analysis were used to optimize enzymatic pretreatment and to evaluate the influence of major variables (enzyme concentration, temperature and pH) on the performance of the microwave assisted extraction.Under optimal conditions, an extraction yield of 24 mg oil g−1 substrate was achieved (an increase by approximately 25% in comparison with the classic extraction conditions of conventional hydrodistillation).The main compounds of the essential oils obtained were analyzed and identified by gas chromatography coupled to mass spectrometry (GC-MS). Analyzing the data obtained indicated that the content of main compounds (linalool and linalyl acetate − 73%) was greater than that obtained by conventional extraction (67%).
研究了微波辅助加氢蒸馏法提取薰衣草精油的工艺条件。为了检查精油提取的任何潜在差异,薰衣草花进行了酶预处理。采用23因子实验设计,结合数据分析的统计方法,优化酶解预处理,评价酶浓度、温度、pH等主要变量对微波辅助提取效果的影响。在最佳条件下,油的提取率达到24 mg g - 1底物(与传统加氢蒸馏的经典提取条件相比,提高了约25%)。采用气相色谱-质谱联用技术(GC-MS)对所得精油的主要成分进行了分析鉴定。分析结果表明,其主要成分(芳樟醇和乙酸芳樟醇)的含量(- 73%)高于常规提取法(67%)。
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引用次数: 25
Obtaining and characterizing modified tannins by physical-chemical methods 用物理化学方法制备改性单宁并对其进行表征
Pub Date : 2014-02-08 DOI: 10.2478/s11532-014-0505-7
A. Gonţa, T. Lupascu, N. Timbaliuc, A. Meghea
AbstractAfter oxidation of tannins (Tannins 1–3) extracted from grape seeds, Tanoxil compounds with increased solubility and enhanced antioxidant activities were synthesized. In this research, ABTS+· assay and a chemiluminescence method were used for antioxidant measurement of hydrophilic compounds (Tanoxils 1–3).It was observed that the antioxidant activity (AA, %) is very similar for the three samples, while at the same time AA is quite high (93.16%–96.48%). The percentage of inhibition by ABTS+· is higher for Tanoxil 2 (96.4%) as compared to Tannin 2 compound (14.34%). Moreover, the total content (TCF) of carboxyl and phenolic groups was investigated. TCF values, determined for Tanoxil products, revealed a double (Tanoxil 1) or triple (Tanoxil 2) increase as compared to the value of the TCF of Tannin 1. Tanoxil products represent an interest for future research as they have a high AA (96.4%) and the content of acidic groups is significant (TCF, 0.191 meq g−1).
摘要从葡萄籽中提取的单宁(tannins 1-3)经氧化后,合成了具有提高溶解度和增强抗氧化活性的Tanoxil类化合物。本研究采用ABTS+·法和化学发光法测定亲水性化合物(Tanoxils 1-3)的抗氧化性。结果表明,三种样品的抗氧化活性(AA, %)非常接近,但AA含量都很高(93.16% ~ 96.48%)。ABTS+·对Tanoxil 2的抑制率(96.4%)高于单宁2(14.34%)。此外,还测定了其羧基和酚基的总含量。Tanoxil产品的TCF值显示,与单宁1的TCF值相比,TCF值增加了一倍(Tanoxil 1)或三倍(Tanoxil 2)。Tanoxil产品具有较高的AA(96.4%)和显著的酸性基团含量(TCF, 0.191 meq g−1),因此具有未来研究的兴趣。
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引用次数: 2
Influence of temperature on the reduction kinetics of Bi(III) ion in the presence of cystine in chlorate (VII) solutions of decreased water activity 温度对水活度降低的氯酸盐(VII)溶液中胱氨酸存在下Bi(III)离子还原动力学的影响
Pub Date : 2014-02-01 DOI: 10.2478/s11532-013-0376-3
A. Nosal-Wiercińska
AbstractThe results of the kinetic measurements of Bi(III) electroreduction on a mercury electrode in 1–8 mol dm−3 chlorate (VII) solutions and in the presence of cystine demonstrate a dependence of the process on the temperature. The applied electrochemical techniques (DC polarography, cyclic and SWV voltammetry) allowed for the determination of the kinetic and thermodynamic parameters and their correlation with water activity. The catalytic activity of cystine was confirmed by the decrease in overall enthalpies of activation. The changes in the values of ΔH≠ and ΔS0 for Bi(III) electroreduction in the presence of cystine with the increase of chlorate (VII) concentration showed that the mechanism is different in solutions with low water activity as compared to those with high water activity. Probably it is connected with a different structure of the activated complexes (Bi-Hg(SR)2), mediating electron transfer.
摘要在1-8 mol dm−3氯酸盐(VII)溶液和胱氨酸存在下,在汞电极上电还原Bi(III)的动力学测量结果表明,该过程与温度有关。应用电化学技术(直流极谱法、循环伏安法和SWV伏安法)可以确定动力学和热力学参数及其与水活度的关系。胱氨酸的催化活性通过总活化焓的降低得到证实。胱氨酸存在下Bi(III)电还原的ΔH≠和ΔS0值随氯酸盐(VII)浓度的增加而变化,表明低水活度溶液与高水活度溶液的电还原机理不同。它可能与活化配合物(Bi-Hg(SR)2)的另一种结构相连接,介导电子转移。
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引用次数: 2
DFT calculation and assignment of vibrational spectra of aryl and alkyl chlorophosphates 芳基和烷基氯磷酸盐振动谱的DFT计算和赋值
Pub Date : 2014-02-01 DOI: 10.2478/s11532-013-0359-4
V. Anishchenko, V. I. Rybachenko, K. Chotiy, A. Redko
AbstractDFT calculations of vibrational spectra of chlorophosphates using wide range of basis sets and hybrid functionals were performed. Good agreement between calculated and experimental vibrational spectra was reached by the combination of non-empirical functional PBE0 with both middle and large basis sets. The frequencies of the stretching vibrations of the phosphate group calculated using semi-empirical functional B3LYP for all basis sets deviate significantly from the experimental values. The number of polarization functions on heavy atoms was shown to be a key factor for the calculation of vibrational frequencies of organophosphates. The importance of consideration of all the stable rotamers for a complete assignment of fundamental modes was shown.
摘要采用大范围基集和杂化泛函对磷酸氯盐的振动谱进行了dft计算。将非经验泛函PBE0与中基集和大基集相结合,得到了计算谱与实验谱较好的一致性。使用半经验泛函B3LYP对所有基集计算的磷酸基团的拉伸振动频率与实验值有明显偏差。重原子上的极化函数数是计算有机磷酸盐振动频率的关键因素。说明了考虑所有稳定转子对于基本模态完整分配的重要性。
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引用次数: 0
期刊
Central European Journal of Chemistry
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