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Role of lamin A/C on dendritic cell function in antiviral immunity 片层蛋白 A/C在抗病毒免疫中对树突状细胞功能的作用
IF 8 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-12 DOI: 10.1007/s00018-024-05423-9
Beatriz Herrero-Fernández, Marina Ortega-Zapero, Raquel Gómez-Bris, Angela Sáez, Salvador Iborra, Virginia Zorita, Ana Quintas, Enrique Vázquez, Ana Dopazo, Francisco Sánchez-Madrid, Silvia Magdalena Arribas, Jose Maria González-Granado

Dendritic cells (DCs) play a crucial role in orchestrating immune responses, particularly in promoting IFNγ-producing-CD8 cytotoxic T lymphocytes (CTLs) and IFNγ-producing-CD4 T helper 1 (Th1) cells, which are essential for defending against viral infections. Additionally, the nuclear envelope protein lamin A/C has been implicated in T cell immunity. Nevertheless, the intricate interplay between innate and adaptive immunity in response to viral infections, particularly the role of lamin A/C in DC functions within this context, remains poorly understood. In this study, we demonstrate that mice lacking lamin A/C in myeloid LysM promoter-expressing cells exhibit a reduced capacity to induce Th1 and CD8 CTL responses, leading to impaired clearance of acute primary Vaccinia virus (VACV) infection. Remarkably, in vitro-generated granulocyte macrophage colony-stimulating factor bone marrow-derived DCs (GM-CSF BMDCs) show high levels of lamin A/C. Lamin A/C absence on GM-CSF BMDCs does not affect the expression of costimulatory molecules on the cell membrane but it reduces the cellular ability to form immunological synapses with naïve CD4 T cells. Lamin A/C deletion induces alterations in NFκB nuclear localization, thereby influencing NF-κB-dependent transcription. Furthermore, lamin A/C ablation modifies the gene accessibility of BMDCs, predisposing these cells to mount a less effective antiviral response upon TLR stimulation. This study highlights the critical role of DCs in interacting with CD4 T cells during antiviral responses and proposes some mechanisms through which lamin A/C may modulate DC function via gene accessibility and transcriptional regulation.

树突状细胞(DC)在协调免疫反应中发挥着至关重要的作用,特别是在促进产生 IFNγ-CD8 的细胞毒性 T 淋巴细胞(CTL)和产生 IFNγ-CD4 的 T 辅助 1(Th1)细胞方面。此外,核包膜蛋白 Lamin A/C 也与 T 细胞免疫有关。然而,人们对先天性免疫和适应性免疫在应对病毒感染时错综复杂的相互作用,尤其是层蛋白 A/C在直流电功能中的作用仍然知之甚少。在这项研究中,我们证明了骨髓LysM启动子表达细胞中缺乏lamin A/C的小鼠诱导Th1和CD8 CTL反应的能力下降,导致急性原发性卷尾病毒(VACV)感染的清除能力受损。值得注意的是,体外生成的粒细胞巨噬细胞集落刺激因子骨髓源性直流细胞(GM-CSF BMDCs)显示出高水平的板层蛋白 A/C。GM-CSF BMDCs 上的 Lamin A/C 缺失不会影响细胞膜上成本刺激分子的表达,但会降低细胞与幼稚 CD4 T 细胞形成免疫突触的能力。片层 A/C缺失会引起 NFκB 核定位的改变,从而影响 NF-κB 依赖性转录。此外,片层蛋白 A/C缺失改变了 BMDCs 的基因可及性,使这些细胞在 TLR 刺激下做出的抗病毒反应不那么有效。这项研究强调了DC在抗病毒反应过程中与CD4 T细胞相互作用的关键作用,并提出了片层A/C通过基因可及性和转录调控调节DC功能的一些机制。
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引用次数: 0
Phenotypic profiling of human induced regulatory T cells at early differentiation: insights into distinct immunosuppressive potential 人类诱导调节性 T 细胞早期分化的表型分析:洞察不同的免疫抑制潜力
IF 8 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-12 DOI: 10.1007/s00018-024-05429-3
Roosa Kattelus, Inna Starskaia, Markus Lindén, Kedar Batkulwar, Sami Pietilä, Robert Moulder, Alexander Marson, Omid Rasool, Tomi Suomi, Laura L. Elo, Riitta Lahesmaa, Tanja Buchacher

Regulatory T cells (Tregs) play a key role in suppressing systemic effector immune responses, thereby preventing autoimmune diseases but also potentially contributing to tumor progression. Thus, there is great interest in clinically manipulating Tregs, but the precise mechanisms governing in vitro-induced Treg (iTreg) differentiation are not yet fully understood. Here, we used multiparametric mass cytometry to phenotypically profile human iTregs during the early stages of in vitro differentiation at single-cell level. A panel of 25 metal-conjugated antibodies specific to markers associated with human Tregs was used to characterize these immunomodulatory cells. We found that iTregs highly express the transcription factor FOXP3, as well as characteristic Treg-associated surface markers (e.g. CD25, PD1, CD137, CCR4, CCR7, CXCR3, and CD103). Expression of co-inhibitory factors (e.g. TIM3, LAG3, and TIGIT) increased slightly at late stages of iTreg differentiation. Further, CD103 was upregulated on a subpopulation of iTregs with greater suppressive capacity than their CD103 counterparts. Using mass-spectrometry-based proteomics, we showed that sorted CD103+ iTregs express factors associated with immunosuppression. Overall, our study highlights that during early stages of differentiation, iTregs resemble memory-like Treg features with immunosuppressive activity, and provides opportunities for further investigation into the molecular mechanisms underlying Treg function.

调节性 T 细胞(Tregs)在抑制全身效应免疫反应中发挥着关键作用,从而预防自身免疫性疾病,但也有可能导致肿瘤进展。因此,人们对在临床上操纵 Tregs 产生了浓厚的兴趣,但体外诱导 Treg(iTreg)分化的确切机制尚未完全明了。在这里,我们使用多参数质谱仪在单细胞水平上对体外分化早期阶段的人类 iTregs 进行了表型分析。我们使用了25种与人Tregs相关标记物特异的金属结合抗体来表征这些免疫调节细胞。我们发现,iTregs 高度表达转录因子 FOXP3 以及 Treg 相关的特征性表面标记(如 CD25、PD1、CD137、CCR4、CCR7、CXCR3 和 CD103)。在 iTreg 分化的晚期,协同抑制因子(如 TIM3、LAG3 和 TIGIT)的表达略有增加。此外,CD103在iTregs亚群中上调,与CD103-对应物相比,其抑制能力更强。通过基于质谱的蛋白质组学研究,我们发现分选的 CD103+ iTregs 表达与免疫抑制相关的因子。总之,我们的研究强调了在分化的早期阶段,iTregs 类似于具有免疫抑制活性的记忆型 Treg 特征,并为进一步研究 Treg 功能的分子机制提供了机会。
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引用次数: 0
Vitamin B12 ameliorates gut epithelial injury via modulating the HIF-1 pathway and gut microbiota 维生素 B12 通过调节 HIF-1 通路和肠道微生物群改善肠道上皮损伤
IF 8 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-11 DOI: 10.1007/s00018-024-05435-5
Chenxi Feng, Jinhua Yan, Ting Luo, Hong Zhang, Hu Zhang, Yu Yuan, Yi Chen, Haiyang Chen

Inflammatory bowel diseases (IBDs) are immune chronic diseases characterized by recurrent episodes, resulting in continuous intestinal barrier damage and intestinal microbiota dysbiosis. Safe strategies aimed at stabilizing and reducing IBDs recurrence have been vigorously pursued. Here, we constructed a recurrent intestinal injury Drosophila model and found that vitamin B12 (VB12), an essential co-factor for organism physiological functions, could effectively protect the intestine and reduce dextran sulfate sodium-induced intestinal barrier disruption. VB12 also alleviated microbial dysbiosis in the Drosophila model and inhibited the growth of gram-negative bacteria. We demonstrated that VB12 could mitigate intestinal damage by activating the hypoxia-inducible factor-1 signaling pathway in injured conditions, which was achieved by regulating the intestinal oxidation. In addition, we also validated the protective effect of VB12 in a murine acute colitis model. In summary, we offer new insights and implications for the potential supportive role of VB12 in the management of recurrent IBDs flare-ups.

炎症性肠病(IBD)是一种免疫性慢性疾病,其特点是反复发作,导致肠道屏障持续受损和肠道微生物群失调。旨在稳定和减少 IBD 复发的安全策略一直受到人们的大力关注。在这里,我们构建了一个复发性肠道损伤果蝇模型,并发现维生素 B12(VB12)作为机体生理功能所必需的辅助因子,能有效保护肠道,减少葡聚糖硫酸钠诱导的肠屏障破坏。VB12 还能缓解果蝇模型中的微生物菌群失调,抑制革兰氏阴性菌的生长。我们证明,VB12 可在损伤条件下通过激活缺氧诱导因子-1 信号通路来减轻肠道损伤,而这是通过调节肠道氧化作用实现的。此外,我们还在小鼠急性结肠炎模型中验证了 VB12 的保护作用。总之,我们为 VB12 在治疗 IBD 复发中的潜在支持作用提供了新的见解和意义。
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引用次数: 0
MicroRNA-411-5p alleviates lipid deposition in metabolic dysfunction-associated steatotic liver disease by targeting the EIF4G2/FOXO3 axis MicroRNA-411-5p通过靶向EIF4G2/FOXO3轴缓解代谢功能障碍相关脂肪性肝病的脂质沉积
IF 8 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-11 DOI: 10.1007/s00018-024-05434-6
Zhiping Wan, Xiaoquan Liu, Xiaoan Yang, Zexuan Huang, Xiaoman Chen, Qingqing Feng, Hong Cao, Hong Deng

Background

Abnormal lipid deposition is an important driver of the progression of metabolic dysfunction-associated steatotic liver disease (MASLD). MicroRNA-411-5p (miR-411-5p) and eukaryotic translation initiation factor 4γ2 (EIF4G2) are related to abnormal lipid deposition, but the specific mechanism is unknown.

Methods

A high-fat, high-cholesterol diet (HFHCD) and a choline-deficient, L-amino acid-defined, high-fat diet (CDAHFD) and a high-fructose diet (HFrD) were used to establish MASLD rat and mouse models, respectively. MiR-411-5p agomir and mimic were used to upregulate the miR-411-5p in vivo and in vitro, respectively. Adeno-associated virus type 8 (AAV8) carrying EIF4G2 short hairpin RNA (shRNA) and small interfering RNA (siRNA) were used to downregulate the EIF4G2 expression in vivo and in vitro, respectively. Liver histopathological analysis, Biochemical analysis and other experiments were used to explore the functions of miR-411-5p and EIF4G2.

Results

MiR-411-5p was decreased in both MASLD rats and mice, and was negatively correlated with liver triglycerides and serum alanine transaminase (ALT) and aspartate transaminase (AST) levels. Upregulation of miR-411-5p alleviated liver lipid deposition and hepatocellular steatosis. Moreover, miR-411-5p targeted and downregulated EIF4G2. Downregulation of EIF4G2 not only reduced liver triglycerides and serum ALT and AST levels in MASLD model, but also alleviated lipid deposition. Notably, upregulation of miR-411-5p and downregulation of EIF4G2 led to the reduction of forkhead box class O3 (FOXO3) and inhibited the expression of sterol regulatory-element binding protein 1 (SREBP1), acetyl-CoA carboxylase 1 (ACC1) and fatty acid synthase (FASN), thereby reducing fatty acid synthesis.

Conclusions

Upregulation of miR-411-5p inhibits EIF4G2 to reduce the FOXO3 expression, thereby reducing fatty acid synthesis and alleviating abnormal lipid deposition in MASLD.

背景异常脂质沉积是代谢功能障碍相关性脂肪性肝病(MASLD)进展的重要驱动因素。方法分别用高脂肪、高胆固醇饮食(HFHCD)、胆碱缺乏、L-氨基酸定义的高脂肪饮食(CDAHFD)和高果糖饮食(HFrD)建立 MASLD 大鼠和小鼠模型。MiR-411-5p agomir 和模拟物分别用于在体内和体外上调 miR-411-5p。携带 EIF4G2 短发夹 RNA(shRNA)和小干扰 RNA(siRNA)的腺相关病毒 8 型(AAV8)分别用于下调 EIF4G2 在体内和体外的表达。结果 miR-411-5p在MASLD大鼠和小鼠中均下降,且与肝脏甘油三酯、血清丙氨酸转氨酶(ALT)和天冬氨酸转氨酶(AST)水平呈负相关。上调 miR-411-5p 可减轻肝脏脂质沉积和肝细胞脂肪变性。此外,miR-411-5p 还能靶向下调 EIF4G2。下调 EIF4G2 不仅能降低 MASLD 模型的肝脏甘油三酯、血清谷丙转氨酶和谷草转氨酶水平,还能缓解脂质沉积。值得注意的是,miR-411-5p 的上调和 EIF4G2 的下调导致叉头盒类 O3(FOXO3)的减少,并抑制了固醇调节元素结合蛋白 1(SREBP1)、乙酰-CoA 羧化酶 1(ACC1)和脂肪酸合成酶(FASN)的表达,从而减少了脂肪酸的合成。结论上调 miR-411-5p 可抑制 EIF4G2 以减少 FOXO3 的表达,从而减少脂肪酸的合成,缓解 MASLD 的异常脂质沉积。
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引用次数: 0
High sugar diet promotes tumor progression paradoxically through aberrant upregulation of pepck1 高糖饮食通过 pepck1 的异常上调自相矛盾地促进肿瘤进展
IF 8 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-11 DOI: 10.1007/s00018-024-05438-2
Che-Wei Chang, Yu-Hshun Chin, Meng-Syuan Liu, Yu-Chia Shen, Shian-Jang Yan

High dietary sugar (HDS), a contemporary dietary concern due to excessive intake of added sugars and carbohydrates, escalates the risk of metabolic disorders and concomitant cancers. However, the molecular mechanisms underlying HDS-induced cancer progression are not completely understood. We found that phosphoenolpyruvate carboxykinase 1 (PEPCK1), a pivotal enzyme in gluconeogenesis, is paradoxically upregulated in tumors by HDS, but not by normal dietary sugar (NDS), during tumor progression. Targeted knockdown of pepck1, but not pepck2, specifically in tumor tissue in Drosophila in vivo, not only attenuates HDS-induced tumor growth but also significantly improves the survival of Ras/Src tumor-bearing animals fed HDS. Interestingly, HP1a-mediated heterochromatin interacts directly with the pepck1 gene and downregulates pepck1 gene expression in wild-type Drosophila. Mechanistically, we demonstrated that, under HDS conditions, pepck1 knockdown reduces both wingless and TOR signaling, decreases evasion of apoptosis, reduces genome instability, and suppresses glucose uptake and trehalose levels in tumor cells in vivo. Moreover, rational pharmacological inhibition of PEPCK1, using hydrazinium sulfate, greatly improves the survival of tumor-bearing animals with pepck1 knockdown under HDS. This study is the first to show that elevated levels of dietary sugar induce aberrant upregulation of PEPCK1, which promotes tumor progression through altered cell signaling, evasion of apoptosis, genome instability, and reprogramming of carbohydrate metabolism. These findings contribute to our understanding of the complex relationship between diet and cancer at the molecular, cellular, and organismal levels and reveal PEPCK1 as a potential target for the prevention and treatment of cancers associated with metabolic disorders.

高膳食糖(HDS)是由于过量摄入添加糖和碳水化合物而引起的当代饮食问题,会增加代谢紊乱和并发癌症的风险。然而,HDS 诱导癌症进展的分子机制尚未完全明了。我们发现,磷酸烯醇丙酮酸羧激酶 1(PEPCK1)是葡萄糖生成过程中的一个关键酶,在肿瘤进展过程中,HDS 会上调肿瘤中的磷酸烯醇丙酮酸羧激酶 1(PEPCK1),而正常膳食糖(NDS)不会上调磷酸烯醇丙酮酸羧激酶 1(PEPCK1)。在果蝇体内的肿瘤组织中靶向敲除 pepck1(而非 pepck2),不仅能减轻 HDS 诱导的肿瘤生长,还能显著提高喂食 HDS 的 Ras/Src 肿瘤动物的存活率。有趣的是,HP1a 介导的异染色质直接与 pepck1 基因相互作用,并下调野生型果蝇中 pepck1 基因的表达。从机理上讲,我们证明了在 HDS 条件下,pepck1 基因敲除会减少无翅和 TOR 信号传导,减少对细胞凋亡的逃避,降低基因组不稳定性,并抑制体内肿瘤细胞的葡萄糖摄取和三卤糖水平。此外,利用硫酸肼对 PEPCK1 进行合理的药理抑制,可大大提高在 HDS 条件下 PEPCK1 基因敲除的肿瘤动物的存活率。这项研究首次表明,膳食糖分水平的升高会诱导 PEPCK1 的异常上调,而 PEPCK1 会通过改变细胞信号、逃避凋亡、基因组不稳定性和碳水化合物代谢的重编程来促进肿瘤的进展。这些发现有助于我们从分子、细胞和机体层面了解饮食与癌症之间的复杂关系,并揭示了 PEPCK1 是预防和治疗与代谢紊乱有关的癌症的潜在靶点。
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引用次数: 0
LncRNA ACVR2B-as1 interacts with ALDOA to regulate the self-renewal and apoptosis of human spermatogonial stem cells by controlling glycolysis activity LncRNA ACVR2B-as1与ALDOA相互作用,通过控制糖酵解活性调节人类精原干细胞的自我更新和凋亡
IF 8 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-10 DOI: 10.1007/s00018-024-05414-w
Zhipeng Xu, Cai Lv, Jun Gao, Yinghong Cui, Wei Liu, Zuping He, Leye He

Human spermatogonial stem cells (SSCs) have significant applications in reproductive medicine and regenerative medicine because of their great plasticity. Nevertheless, it remains unknown about the functions and mechanisms of long non-coding RNA (LncRNA) in regulating the fate determinations of human SSCs. Here we have demonstrated that LncRNA ACVR2B-as1 (activin A receptor type 2B antisense RNA 1) controls the self-renewal and apoptosis of human SSCs by interaction with ALDOA via glycolysis activity. LncRNA ACVR2B-as1 is highly expressed in human SSCs. LncRNA ACVR2B-as1 silencing suppresses the proliferation and DNA synthesis and enhances the apoptosis of human SSCs. Mechanistically, our ChIRP-MS and RIP assays revealed that ACVR2B-as1 interacted with ALDOA in human SSCs. High expression of ACVR2B-as1 enhanced the proliferation, DNA synthesis, and glycolysis of human SSCs but inhibited their apoptosis through up-regulation of ALDOA. Importantly, overexpression of ALDOA counteracted the effect of ACVR2B-as1 knockdown on the aforementioned biological processes. Collectively, these results indicate that ACVR2B-as1 interacts with ALDOA to control the self-renewal and apoptosis of human SSCs by enhancing glycolysis activity. This study is of great significance because it sheds a novel insight into molecular mechanisms underlying the fate decisions of human SSCs and it may offer innovative approaches to address the etiology of male infertility.

人类精原干细胞(SSCs)具有极大的可塑性,因此在生殖医学和再生医学领域有着重要的应用。然而,长非编码RNA(LncRNA)在调控人类精原干细胞命运决定中的功能和机制仍然未知。在这里,我们证实了 LncRNA ACVR2B-as1 (激活素 A 受体 2B 型反义 RNA 1)通过糖酵解活性与 ALDOA 相互作用,从而控制人 SSCs 的自我更新和凋亡。LncRNA ACVR2B-as1 在人 SSCs 中高表达。沉默LncRNA ACVR2B-as1可抑制人SSCs的增殖和DNA合成,并增强其凋亡。从机理上讲,我们的 ChIRP-MS 和 RIP 检测发现 ACVR2B-as1 与人 SSCs 中的 ALDOA 相互作用。高表达 ACVR2B-as1 可增强人 SSCs 的增殖、DNA 合成和糖酵解,但通过上调 ALDOA 可抑制其凋亡。重要的是,ALDOA 的过表达抵消了 ACVR2B-as1 敲除对上述生物过程的影响。总之,这些结果表明 ACVR2B-as1 与 ALDOA 相互作用,通过增强糖酵解活性来控制人 SSCs 的自我更新和凋亡。这项研究意义重大,因为它揭示了人类造血干细胞命运决定的分子机制,并可能为解决男性不育症的病因提供创新方法。
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引用次数: 0
Correction: Genome wide inherited modifications of the tomato epigenome by trans-activated bacterial CG methyltransferase. 更正:反式活化细菌 CG 甲基转移酶对番茄表观基因组的全基因组遗传修饰。
IF 6.2 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-10 DOI: 10.1007/s00018-024-05387-w
Bapatla Kesava Pavan Kumar, Sébastien Beaubiat, Chandra Bhan Yadav, Ravit Eshed, Tzahi Arazi, Amir Sherman, Nicolas Bouché
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引用次数: 0
Correction: Novel CDKL5 targets identified in human iPSC-derived neurons. 更正:在人类 iPSC 衍生神经元中发现新的 CDKL5 靶点。
IF 6.2 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-10 DOI: 10.1007/s00018-024-05421-x
Sean Massey, Ching-Seng Ang, Nadia M Davidson, Anita Quigley, Ben Rollo, Alexander R Harris, Robert M I Kapsa, John Christodoulou, Nicole J Van Bergen
{"title":"Correction: Novel CDKL5 targets identified in human iPSC-derived neurons.","authors":"Sean Massey, Ching-Seng Ang, Nadia M Davidson, Anita Quigley, Ben Rollo, Alexander R Harris, Robert M I Kapsa, John Christodoulou, Nicole J Van Bergen","doi":"10.1007/s00018-024-05421-x","DOIUrl":"https://doi.org/10.1007/s00018-024-05421-x","url":null,"abstract":"","PeriodicalId":10007,"journal":{"name":"Cellular and Molecular Life Sciences","volume":"81 1","pages":"392"},"PeriodicalIF":6.2,"publicationDate":"2024-09-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11387276/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142281147","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Correction: Calcium-sensing receptor and NF-κB pathways in TN breast cancer contribute to cancer-induced cardiomyocyte damage via activating neutrophil extracellular traps formation 更正:TN 乳腺癌中的钙传感受体和 NF-κB 通路通过激活中性粒细胞胞外陷阱的形成,导致癌症诱发的心肌细胞损伤
IF 8 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-10 DOI: 10.1007/s00018-024-05346-5
Jingya Zeng, Yangyang Cheng, Wanlin Xie, Xin Lin, Chenglong Ding, Huimin Xu, Baohong Cui, Yixin Chen, Song Gao, Siwen Zhang, Kaiyue Liu, Yue Lu, Jialing Zhou, Zhongxiang Shi, Yihua Sun
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引用次数: 0
Proteomics profiling and machine learning in nusinersen-treated patients with spinal muscular atrophy 对接受过纽西奈森治疗的脊髓性肌萎缩症患者进行蛋白质组学分析和机器学习
IF 8 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-10 DOI: 10.1007/s00018-024-05426-6
Chiara Panicucci, Eray Sahin, Martina Bartolucci, Sara Casalini, Noemi Brolatti, Marina Pedemonte, Serena Baratto, Sara Pintus, Elisa Principi, Adele D’Amico, Marika Pane, Marina Sframeli, Sonia Messina, Emilio Albamonte, Valeria A. Sansone, Eugenio Mercuri, Enrico Bertini, Ugur Sezerman, Andrea Petretto, Claudio Bruno

Aim

The availability of disease-modifying therapies and newborn screening programs for spinal muscular atrophy (SMA) has generated an urgent need for reliable prognostic biomarkers to classify patients according to disease severity. We aim to identify cerebrospinal fluid (CSF) prognostic protein biomarkers in CSF samples of SMA patients collected at baseline (T0), and to describe proteomic profile changes and biological pathways influenced by nusinersen before the sixth nusinersen infusion (T302).

Methods

In this multicenter retrospective longitudinal study, we employed an untargeted liquid chromatography mass spectrometry (LC-MS)-based proteomic approach on CSF samples collected from 61 SMA patients treated with nusinersen (SMA1 n=19, SMA2 n=19, SMA3 n=23) at T0 at T302. The Random Forest (RF) machine learning algorithm and pathway enrichment analysis were applied for analysis.

Results

The RF algorithm, applied to the protein expression profile of naïve patients, revealed several proteins that could classify the different types of SMA according to their differential abundance at T0. Analysis of changes in proteomic profiles identified a total of 147 differentially expressed proteins after nusinersen treatment in SMA1, 135 in SMA2, and 289 in SMA3.

Overall, nusinersen-induced changes on proteomic profile were consistent with i) common effects observed in allSMA types (i.e. regulation of axonogenesis), and ii) disease severity-specific changes, namely regulation of glucose metabolism in SMA1, of coagulation processes in SMA2, and of complement cascade in SMA3.

Conclusions

This untargeted LC-MS proteomic profiling in the CSF of SMA patients revealed differences in protein expression in naïve patients and showed nusinersen-related modulation in several biological processes after 10 months of treatment. Further confirmatory studies are needed to validate these results in larger number of patients and over abroader timeframe.

目的脊髓性肌萎缩症(SMA)疾病改变疗法和新生儿筛查计划的出现,迫切需要可靠的预后生物标志物来根据疾病严重程度对患者进行分类。我们的目的是在基线(T0)收集的 SMA 患者 CSF 样本中鉴定脑脊液(CSF)预后蛋白生物标志物,并在第六次输注奴西那生(T302)之前描述蛋白质组谱变化和受奴西那生影响的生物通路。方法在这项多中心回顾性纵向研究中,我们采用了一种基于非靶向液相色谱质谱法(LC-MS)的蛋白质组学方法,对61名接受奴西奈森治疗的SMA患者(SMA1 n=19, SMA2 n=19, SMA3 n=23 )在T0和T302时采集的CSF样本进行了分析。应用随机森林(RF)机器学习算法和通路富集分析进行了分析。结果应用RF算法分析天真患者的蛋白质表达谱时,发现有几种蛋白质可根据其在T0时的丰度差异对不同类型的SMA进行分类。对蛋白质组图谱变化的分析发现,纽西奈森治疗后,SMA1 共有 147 个表达不同的蛋白质,SMA2 有 135 个,SMA3 有 289 个。结论这项对 SMA 患者脑脊液进行的非靶向 LC-MS 蛋白质组学分析揭示了新患者蛋白质表达的差异,并显示了治疗 10 个月后努西奈森对多个生物过程的相关调节。要在更多患者和更长的时间框架内验证这些结果,还需要进一步的确证研究。
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引用次数: 0
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Cellular and Molecular Life Sciences
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