Thomas Juhasz-Dora, Colin Hannon, Luke Harman, Julie Maguire, Thomas K. Doyle, Laura Buijse, Stein-Kato Lindberg
Sea cucumber ranching has been proposed as a sustainable, low-trophic source of seafood while remediating organic aquaculture waste. This exploratory study investigates the bioaccumulation and depuration of two finfish veterinary therapeutants, emamectin benzoate (EB) and oxytetracycline (OTC), in the European black sea cucumber (Holothuria forskali) within controlled conditions. Sea cucumbers (n = 80) were fed medicated aquafeed for 7 days, followed by tissue sampling at intervals up to 33 days. Mean initial tissue concentrations were 12.18 ± 0.99 ng/g for EB and 3.45 ± 2.90 µg/g for OTC. The elimination half-lives (t1/2) were 10.7 days for EB and 23.1 days for OTC. Notably, 78% of sea cucumbers eviscerated their internal organs after exposure, and seven mortalities occurred. The sampled control animals (n = 20) were intact, indicating potential physiological stress from ingesting therapeutants. This exploratory study provides critical initial data on therapeutant impacts after ingestion by H. forskali, highlighting the need for further field validation to establish appropriate withdrawal periods for sea cucumber ranching within aquaculture systems using veterinary therapeutants.
{"title":"Bioaccumulation and Depuration of Emamectin Benzoate and Oxytetracycline in the European Black Sea Cucumber (Holothuria forskali): Implications for Aquaculture Integration","authors":"Thomas Juhasz-Dora, Colin Hannon, Luke Harman, Julie Maguire, Thomas K. Doyle, Laura Buijse, Stein-Kato Lindberg","doi":"10.1002/aff2.70132","DOIUrl":"https://doi.org/10.1002/aff2.70132","url":null,"abstract":"<p>Sea cucumber ranching has been proposed as a sustainable, low-trophic source of seafood while remediating organic aquaculture waste. This exploratory study investigates the bioaccumulation and depuration of two finfish veterinary therapeutants, emamectin benzoate (EB) and oxytetracycline (OTC), in the European black sea cucumber (<i>Holothuria forskali</i>) within controlled conditions. Sea cucumbers (<i>n</i> = 80) were fed medicated aquafeed for 7 days, followed by tissue sampling at intervals up to 33 days. Mean initial tissue concentrations were 12.18 ± 0.99 ng/g for EB and 3.45 ± 2.90 µg/g for OTC. The elimination half-lives (<i>t</i><sub>1/2</sub>) were 10.7 days for EB and 23.1 days for OTC. Notably, 78% of sea cucumbers eviscerated their internal organs after exposure, and seven mortalities occurred. The sampled control animals (<i>n</i> = 20) were intact, indicating potential physiological stress from ingesting therapeutants. This exploratory study provides critical initial data on therapeutant impacts after ingestion by <i>H. forskali</i>, highlighting the need for further field validation to establish appropriate withdrawal periods for sea cucumber ranching within aquaculture systems using veterinary therapeutants.</p>","PeriodicalId":100114,"journal":{"name":"Aquaculture, Fish and Fisheries","volume":"5 6","pages":""},"PeriodicalIF":1.9,"publicationDate":"2025-10-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/aff2.70132","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145407169","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Marco Aurelio Nuño-Maganda, Gerardo Amador-Cano, Yahir Hernández-Mier, Yessil Varinka Saenz-Aguilar, Said Polanco-Martagón
The Nannochloropsis oceanica microalgae contain a high content of polyunsaturated fatty acids, amino acids, and proteins, which are essential in diets intended for the cultivation of mollusks, crustaceans, and fish to ensure good larval growth and better survival. Counting any microalgae is fundamental to maintaining the good health of mollusks and other species that base their diet on this organism. Currently, in different aquaponics processes, counting is done manually, which is tedious for the technician and prone to errors. This study proposes an automatic counting system based on computer vision and machine learning. We describe the development of two applications. The first one allows the technician to manually count the microalgae, marking them manually to build a microalgae dataset. Once we generated the dataset, we trained classical machine learning models and compared them against a convolutional neural network (CNN). Finally, we integrated these models into a second desktop application in which the technician selects the region of interest within the microscopy image, and the app counts the microalgae based on the previously trained models. We report 91% accuracy in the CNN-based model we trained, which is an adequate percentage given the noise and variable lighting conditions of the microalgae dataset.
{"title":"Automatic Detection and Counting of Nannochloropsis oceanica Microalgae: A Comparative Study of Classical Machine Learning Versus Deep Learning–Based Approaches","authors":"Marco Aurelio Nuño-Maganda, Gerardo Amador-Cano, Yahir Hernández-Mier, Yessil Varinka Saenz-Aguilar, Said Polanco-Martagón","doi":"10.1002/aff2.70129","DOIUrl":"https://doi.org/10.1002/aff2.70129","url":null,"abstract":"<p>The <i>Nannochloropsis oceanica</i> microalgae contain a high content of polyunsaturated fatty acids, amino acids, and proteins, which are essential in diets intended for the cultivation of mollusks, crustaceans, and fish to ensure good larval growth and better survival. Counting any microalgae is fundamental to maintaining the good health of mollusks and other species that base their diet on this organism. Currently, in different aquaponics processes, counting is done manually, which is tedious for the technician and prone to errors. This study proposes an automatic counting system based on computer vision and machine learning. We describe the development of two applications. The first one allows the technician to manually count the microalgae, marking them manually to build a microalgae dataset. Once we generated the dataset, we trained classical machine learning models and compared them against a convolutional neural network (CNN). Finally, we integrated these models into a second desktop application in which the technician selects the region of interest within the microscopy image, and the app counts the microalgae based on the previously trained models. We report 91% accuracy in the CNN-based model we trained, which is an adequate percentage given the noise and variable lighting conditions of the microalgae dataset.</p>","PeriodicalId":100114,"journal":{"name":"Aquaculture, Fish and Fisheries","volume":"5 6","pages":""},"PeriodicalIF":1.9,"publicationDate":"2025-10-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/aff2.70129","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145375326","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Benjamin H. Crowe, James O. Harris, Todd J. McWhorter, Matthew S. Bansemer, David A. J. Stone
Protein sparing is an established practice in feed manufacturing where relatively inexpensive ingredients, such as lipids, are incorporated to reduce or ‘spare’ expensive protein ingredients. In this 84-day study, Yellowtail Kingfish, Seriola lalandi (2.13 ± 0.23 kg, mean body mass ± SD; 504 ± 19 mm, fork length ± SD), were fed six different diets formulated on a digestible basis that contained highly palatable and digestible ingredients at realistic commercial inclusion levels to evaluate lipid digestion and storage. Diets were formulated to graded crude protein (CP) levels (40%, 44% and 48%) and either 25% or 30% crude lipid (CL). Lipid and glycogen storage were not significantly affected by CP or CL level. However, a negative relationship between increased CP and hepatocyte vacuolisation was indicated. Crude protein did not influence the bile acid concentrations in digestive tissues, whereas diets with a 30% CL level decreased the total bile acid concentration of gallbladder content compared to that of fish fed diets with a 25% CL level, but no other digestive parameters were affected. Fish fed a dietary CL level of 25% had elevated taurine concentrations in the liver compared with fish fed diets containing a 30% CL level. Liver 3-hydroxy-3-methylglutaryl-CoA reductase (HMGCR) concentration of fish fed diets containing 40% CP level was reduced compared to fish fed diets containing 48% CP levels. Total bilirubin of fish fed 48% CP was less than that of fish fed 44% CP but not fish fed 40% CP, which was similar to that of fish fed both 44% CP and 48% CP. At the water temperatures recorded in this study, Yellowtail Kingfish can be fed diets with up to 30% CL and 48% CP without affecting total bile acid synthesis, storage and liver lipid storage.
{"title":"Investigating Liver Structure and Function in Yellowtail Kingfish, Seriola lalandi, in Response to Diet Protein and Lipid Level Manipulation","authors":"Benjamin H. Crowe, James O. Harris, Todd J. McWhorter, Matthew S. Bansemer, David A. J. Stone","doi":"10.1002/aff2.70130","DOIUrl":"https://doi.org/10.1002/aff2.70130","url":null,"abstract":"<p>Protein sparing is an established practice in feed manufacturing where relatively inexpensive ingredients, such as lipids, are incorporated to reduce or ‘spare’ expensive protein ingredients. In this 84-day study, Yellowtail Kingfish, <i>Seriola lalandi</i> (2.13 ± 0.23 kg, mean body mass ± SD; 504 ± 19 mm, fork length ± SD), were fed six different diets formulated on a digestible basis that contained highly palatable and digestible ingredients at realistic commercial inclusion levels to evaluate lipid digestion and storage. Diets were formulated to graded crude protein (CP) levels (40%, 44% and 48%) and either 25% or 30% crude lipid (CL). Lipid and glycogen storage were not significantly affected by CP or CL level. However, a negative relationship between increased CP and hepatocyte vacuolisation was indicated. Crude protein did not influence the bile acid concentrations in digestive tissues, whereas diets with a 30% CL level decreased the total bile acid concentration of gallbladder content compared to that of fish fed diets with a 25% CL level, but no other digestive parameters were affected. Fish fed a dietary CL level of 25% had elevated taurine concentrations in the liver compared with fish fed diets containing a 30% CL level. Liver 3-hydroxy-3-methylglutaryl-CoA reductase (HMGCR) concentration of fish fed diets containing 40% CP level was reduced compared to fish fed diets containing 48% CP levels. Total bilirubin of fish fed 48% CP was less than that of fish fed 44% CP but not fish fed 40% CP, which was similar to that of fish fed both 44% CP and 48% CP. At the water temperatures recorded in this study, Yellowtail Kingfish can be fed diets with up to 30% CL and 48% CP without affecting total bile acid synthesis, storage and liver lipid storage.</p>","PeriodicalId":100114,"journal":{"name":"Aquaculture, Fish and Fisheries","volume":"5 5","pages":""},"PeriodicalIF":1.9,"publicationDate":"2025-10-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/aff2.70130","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145366387","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Rodrigo Pantoni, João Alberto Farinelli Pantaleão, Fernando Luis Mantelatto
In Brazil, a large quantity of shrimps captured through commercial fishing is marketed as labelled frozen packages following current legislation (Normative Instruction No. 23, of 20 August 2019). This study tested the possibility of errors in species identification (forensic analysis) listed on the labels of packages sold in the country by using mitochondrial molecular marker. Labelled samples (packages) were acquired in supermarkets in different states of Brazil, and specimens were selected on the basis of apparent morphological differences for analysis. DNA was extracted from each specimen selected from packages, with 16S marker amplification, DNA purification and sequencing. Generated sequences were compared with those available in GenBank using BLAST and grouped by neighbour-joining method. Mislabelling was detected regarding species identification. Specimens of Pleoticus muelleri (Solenoceridae) were labelled as ‘pink shrimp’, which should be some species from the genus Penaeus (Penaeidae). Furthermore, representatives of Artemesia longinaris and P. muelleri were found under the label ‘seabob shrimp’ (i.e., Xiphopenaeus spp.). On the other hand, most of the samples were in accordance with the regulations regarding species identification. Our results indicated that some packages (8.8%) do not comply with the regulations. This finding means lack of precision about what is being commercialized and suggests the necessity to propose adjustments in-line with consumer rights and species conservation.
{"title":"Forensic Genetics Into Taxonomic Protocols Finds Misidentifications in Marine Shrimp Packages Commercialized in Brazil","authors":"Rodrigo Pantoni, João Alberto Farinelli Pantaleão, Fernando Luis Mantelatto","doi":"10.1002/aff2.70128","DOIUrl":"https://doi.org/10.1002/aff2.70128","url":null,"abstract":"<p>In Brazil, a large quantity of shrimps captured through commercial fishing is marketed as labelled frozen packages following current legislation (Normative Instruction No. 23, of 20 August 2019). This study tested the possibility of errors in species identification (forensic analysis) listed on the labels of packages sold in the country by using mitochondrial molecular marker. Labelled samples (packages) were acquired in supermarkets in different states of Brazil, and specimens were selected on the basis of apparent morphological differences for analysis. DNA was extracted from each specimen selected from packages, with 16S marker amplification, DNA purification and sequencing. Generated sequences were compared with those available in GenBank using BLAST and grouped by neighbour-joining method. Mislabelling was detected regarding species identification. Specimens of <i>Pleoticus muelleri</i> (Solenoceridae) were labelled as ‘pink shrimp’, which should be some species from the genus <i>Penaeus</i> (Penaeidae). Furthermore, representatives of <i>Artemesia longinaris</i> and <i>P. muelleri</i> were found under the label ‘seabob shrimp’ (i.e., <i>Xiphopenaeus</i> spp.). On the other hand, most of the samples were in accordance with the regulations regarding species identification. Our results indicated that some packages (8.8%) do not comply with the regulations. This finding means lack of precision about what is being commercialized and suggests the necessity to propose adjustments in-line with consumer rights and species conservation.</p>","PeriodicalId":100114,"journal":{"name":"Aquaculture, Fish and Fisheries","volume":"5 5","pages":""},"PeriodicalIF":1.9,"publicationDate":"2025-10-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/aff2.70128","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145366422","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
This study evaluates the performance of an integrated aquaponic system combining gravel bed and NFT modules within a recirculating loop, focusing on nutrient dynamics, plant growth and sensory quality. Conducted in a semi-controlled greenhouse, the system utilized Nile tilapia (Oreochromis niloticus) and cultivated lettuce, Swiss chard and pepper. Water quality analysis showed reduced nitrate levels after the NFT module (0.792 mg/L) compared to source RAS water (1.04 mg/L), while the gravel bed demonstrated superior phosphate removal (0.052 mg/L) and the lowest ammonia concentration (0.074 mg/L). Lettuce grown in NFT exhibited significantly greater shoot biomass (187.00 ± 15.53 g) than gravel-grown plants (105.33 ± 11.79 g), with similar differences observed in root biomass. Plant performance was significantly influenced by the cultivation system, plant variety and their interaction. Pepper plants in NFT produced more fruits (9.00 ± 1.47 vs. 5.50 ± 0.96) and longer fruits, while gravel-grown fruits had ∼8% greater average mass, although this difference was not statistically significant. Sensory evaluation indicated a general preference for NFT-grown lettuce in appearance, aroma, texture, flavour and overall acceptability, though these differences were not statistically significant. Economically, the NFT system yielded higher returns and lower media costs, resulting in a net financial benefit of 11,804.52 ETB. Overall, the NFT system outperformed the gravel bed in plant productivity, nutrient efficiency and economic viability, while gravel beds may offer advantages in contexts requiring greater phosphate or ammonia retention.
{"title":"Evaluation of Nutrient Flow Through and Media-Bed Aquaponic Systems","authors":"Belay Abdissa, Melkamu Gete, Esubalew Muluneh","doi":"10.1002/aff2.70122","DOIUrl":"https://doi.org/10.1002/aff2.70122","url":null,"abstract":"<p>This study evaluates the performance of an integrated aquaponic system combining gravel bed and NFT modules within a recirculating loop, focusing on nutrient dynamics, plant growth and sensory quality. Conducted in a semi-controlled greenhouse, the system utilized Nile tilapia (<i>Oreochromis niloticus</i>) and cultivated lettuce, Swiss chard and pepper. Water quality analysis showed reduced nitrate levels after the NFT module (0.792 mg/L) compared to source RAS water (1.04 mg/L), while the gravel bed demonstrated superior phosphate removal (0.052 mg/L) and the lowest ammonia concentration (0.074 mg/L). Lettuce grown in NFT exhibited significantly greater shoot biomass (187.00 ± 15.53 g) than gravel-grown plants (105.33 ± 11.79 g), with similar differences observed in root biomass. Plant performance was significantly influenced by the cultivation system, plant variety and their interaction. Pepper plants in NFT produced more fruits (9.00 ± 1.47 vs. 5.50 ± 0.96) and longer fruits, while gravel-grown fruits had ∼8% greater average mass, although this difference was not statistically significant. Sensory evaluation indicated a general preference for NFT-grown lettuce in appearance, aroma, texture, flavour and overall acceptability, though these differences were not statistically significant. Economically, the NFT system yielded higher returns and lower media costs, resulting in a net financial benefit of 11,804.52 ETB. Overall, the NFT system outperformed the gravel bed in plant productivity, nutrient efficiency and economic viability, while gravel beds may offer advantages in contexts requiring greater phosphate or ammonia retention.</p>","PeriodicalId":100114,"journal":{"name":"Aquaculture, Fish and Fisheries","volume":"5 5","pages":""},"PeriodicalIF":1.9,"publicationDate":"2025-10-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/aff2.70122","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145317382","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Alene Santos Souza, Adriano Carvalho Costa, Moacyr Antonio Serafini, Rafael Vilhena Reis Neto, Ivan Bezerra Allaman, Rilke Tadeu Fonseca de Freitas, Marília Parreira Fernandes, Rafaella Machado dos Santos de Medeiros, Matheus Barp Pierozan, Liege Dauny Horn, Hortência Aparecida Botelho, Isabel Rodrigues de Rezende, Joel Jorge Nuvunga
Genetic selection for carcass traits has always presented difficulties, because it is necessary to slaughter the animals to collect direct measurements of these traits. So, we evaluate, by path analysis, the cause-and-effect relationship between morphometric measurements and carcass traits on pacu Piaractus mesopotamicus, a very important species for aquaculture in Latin America. A total of 120 fish, at different ages, were anaesthetized, measured in standard length (SL), head length (HL), body height (BH) and body width (BW), slaughtered and processed to obtain the weights and yields of carcass, head, fillet, rib and residue. Path analysis was employed to estimate direct and indirect effects, with body part weight and yields as dependent variables and morphometric measurements and relationships as explanatory variables. Body and rib weights, as well as head yield, are strongly influenced by morphometric variables; HL/BH ration and SL can be used efficiently to determine and indirectly select these traits. With less efficiency, it is possible to indirectly select animals with higher weights and fillet yields and lower residual weights using BH, BW and SL, respectively.
{"title":"Causes and effects between economically important phenotypic traits in pacu Piaractus mesopotamicus","authors":"Alene Santos Souza, Adriano Carvalho Costa, Moacyr Antonio Serafini, Rafael Vilhena Reis Neto, Ivan Bezerra Allaman, Rilke Tadeu Fonseca de Freitas, Marília Parreira Fernandes, Rafaella Machado dos Santos de Medeiros, Matheus Barp Pierozan, Liege Dauny Horn, Hortência Aparecida Botelho, Isabel Rodrigues de Rezende, Joel Jorge Nuvunga","doi":"10.1002/aff2.198","DOIUrl":"https://doi.org/10.1002/aff2.198","url":null,"abstract":"<p>Genetic selection for carcass traits has always presented difficulties, because it is necessary to slaughter the animals to collect direct measurements of these traits. So, we evaluate, by path analysis, the cause-and-effect relationship between morphometric measurements and carcass traits on pacu <i>Piaractus mesopotamicus</i>, a very important species for aquaculture in Latin America. A total of 120 fish, at different ages, were anaesthetized, measured in standard length (SL), head length (HL), body height (BH) and body width (BW), slaughtered and processed to obtain the weights and yields of carcass, head, fillet, rib and residue. Path analysis was employed to estimate direct and indirect effects, with body part weight and yields as dependent variables and morphometric measurements and relationships as explanatory variables. Body and rib weights, as well as head yield, are strongly influenced by morphometric variables; HL/BH ration and SL can be used efficiently to determine and indirectly select these traits. With less efficiency, it is possible to indirectly select animals with higher weights and fillet yields and lower residual weights using BH, BW and SL, respectively.</p>","PeriodicalId":100114,"journal":{"name":"Aquaculture, Fish and Fisheries","volume":"5 5","pages":""},"PeriodicalIF":1.9,"publicationDate":"2025-10-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/aff2.198","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145317370","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The cover image is based on the Original Article by Evaluation of Nutrient Flow Through and Media-Bed Aquaponic Systems by Belay Abdissa et al., https://doi.org/10.1002/aff2.70122.