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Endoscopic fluorescence imaging of tissue selective lanthanide chelates 组织选择性镧系螯合物的内镜荧光成像
Pub Date : 1998-06-01 DOI: 10.1002/1361-6374(199806)6:2<63::AID-BIO1>3.0.CO;2-O
D. S. Hubbard, M. Houlne, G. Kiefer, K. Mcmillan, D. Bornhop
Endoscopic probes have been incorporated into a fluorescent imaging system for the remote quantitation of tissue selective markers. Resolution at the level of 114 line pairs/mm allows visualization of regions that are approximately 6 mm wide. Tissue selective markers, based on polyazamacrocyclic chelates of terbium increase contrast and can be quantified in tissues at the sub-picomole level. Minimally invasive in vivo fluorescence imaging is demonstrated. The potential for application of the system to disease diagnosis and bone graft morphology quantitation is discussed.
内窥镜探针已纳入荧光成像系统的远程定量组织选择性标记。114线对/毫米的分辨率允许可视化大约6毫米宽的区域。基于铽的多氮杂环螯合物的组织选择性标记物增加了对比度,并且可以在亚皮摩尔水平上对组织进行量化。微创体内荧光成像证明。讨论了该系统在疾病诊断和骨移植形态学定量方面的应用潜力。
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引用次数: 12
Axial resolution in the fibre-optical confocal microscope 光纤共聚焦显微镜的轴向分辨率
Pub Date : 1998-06-01 DOI: 10.1002/1361-6374(199806)6:2<98::AID-BIO5>3.0.CO;2-V
M. Sharma, C. Sheppard
The axial resolution in a confocal microscope of high aperture using a single-mode optical fibre for illumination and collection is investigated. This information, together with results previously published regarding signal levels, allows the characterization of the instrument and adjustment of the system parameters to achieve desired imaging properties.
研究了采用单模光纤进行照明和采集的高孔径共聚焦显微镜的轴向分辨率。这些信息与先前发布的有关信号电平的结果一起,允许表征仪器和调整系统参数以实现所需的成像特性。
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引用次数: 10
Surface‐enhanced Raman scattering (SERS)—a new tool for single molecule detection and identification 表面增强拉曼散射(SERS)是单分子检测和鉴定的新工具
Pub Date : 1998-06-01 DOI: 10.1002/1361-6374(199806)6:2<104::AID-BIO6>3.0.CO;2-T
K. Kneipp, H. Kneipp, R. Manoharan, I. Itzkan, R. Dasari, M. Feld
This report describes surface-enhanced Stokes and anti-Stokes Raman scattering of molecules in aqueous colloidal silver solution using non-resonant near-infrared excitation. We demonstrate that extremely large surface-enhanced Raman cross sections of the order of 10−16 cm2 per molecule can be combined with favorable conditions for excitation and collection of Raman scattered light provided by a Raman microscope to achieve single molecule sensitivity. Surface-enhanced Raman spectroscopy will be compared with fluorescence spectroscopy as a tool for single molecule detection.
本文描述了用非共振近红外激发在胶体银水溶液中分子的表面增强斯托克斯和反斯托克斯拉曼散射。我们证明了每分子10−16 cm2量级的极大表面增强拉曼截面可以与拉曼显微镜提供的激发和收集拉曼散射光的有利条件相结合,以实现单分子灵敏度。表面增强拉曼光谱将与荧光光谱作为单分子检测的工具进行比较。
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引用次数: 65
Systematic detection of subtle spatio‐temporal patterns in time‐lapse imaging: II. Particle migrations 延时成像中细微时空模式的系统检测:2。粒子迁移
Pub Date : 1998-06-01 DOI: 10.1002/1361-6374(199806)6:2<71::AID-BIO2>3.0.CO;2-Q
R. Valdés-Pérez, Christopher A. Stone
A recent article introduced a method for detecting subtle spatio-temporal patterns within a dataset of mitotic processes. The method is based on permutation tests, and involves (1) permuting process parameters (e.g., division angle in the earlier case of mitosis), (2) calculating the effects, and (3) checking for distributional changes in a set of measures based on simple considerations of geometry. This paper examines the method’s application to a more common dataset: particles that undergo migration in three or fewer dimensions. The method is further extended in another direction: multiple types of particle are allowed. Exploiting these distinct types significantly enlarges the set of detectable patterns. Monte Carlo simulations are performed to illustrate the new capabilities. The resulting contribution is an increasingly systematic basis for the inference of patterned behavior from imaging datasets.
最近的一篇文章介绍了一种在有丝分裂过程数据集中检测细微时空模式的方法。该方法基于排列测试,涉及(1)排列过程参数(例如,有丝分裂早期情况下的分裂角度),(2)计算影响,以及(3)基于简单的几何考虑检查一组测量中的分布变化。本文研究了该方法在一个更常见的数据集上的应用:在三维或更少的维度上进行迁移的粒子。该方法在另一个方向上进一步扩展:允许多种类型的粒子。利用这些不同的类型大大扩大了可检测模式的集合。通过蒙特卡罗模拟来演示新功能。由此产生的贡献是为从成像数据集推断模式行为提供了越来越系统的基础。
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引用次数: 5
An electromagnetic theory of imaging in fluorescence microscopy, and imaging in polarization fluorescence microscopy 荧光显微镜成像的电磁理论,以及偏振荧光显微镜成像
Pub Date : 1997-12-01 DOI: 10.1002/1361-6374(199712)5:4<205::AID-BIO4>3.3.CO;2-V
C. Sheppard, P. Török
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引用次数: 49
Spatial arrangement of homologous chromosomes during anaphase in early embryos of Drosophila melanogaster studied by three-dimensional fluorescence microscopy 三维荧光显微镜研究黑腹果蝇早期胚胎后期同源染色体的空间排列
Pub Date : 1997-12-01 DOI: 10.1002/1361-6374(199712)5:4<183::AID-BIO2>3.3.CO;2-1
Y. Hiraoka, D. Agard, J. Sedat
Using a computer-controlled fluorescence microscope system, spatial arrangement of homologous chromosomes was analyzed in fixed and living embryos of Drosophila melanogaster at the syncytial blastoderm stage. In fixed embryos, chromosomes were stained with a DNA-specific fluorescent dye, 4′,6-diamidino-2-phenylindole; the arrangement of anaphase chromosomes was determined with their identification by high-resolution analysis. In living embryos, the behavior of chromosomes during anaphase was examined by the use of a strain carrying a long translocated chromosome as a cytological marker to identify the chromosome while the chromosomes were stained by microinjection of rhodamine-conjugated histones into the embryos. Chromosome arrangement was also examined in nuclei that had swollen artificially under anoxic conditions for better spatial separation of individual chromosomes in such nuclei. All these experiments consistently showed that homologous chromosomes were not associated with each other in syncytial blastoderm embryos of Drosophila melanogaster. Our studies also demonstrated that cytological tools greatly facilitate the dissection of nuclear structures when used in combination with imaging technology.
利用计算机控制的荧光显微镜系统,对黑腹果蝇囊胚合胞期固定胚胎和活胚胎同源染色体的空间排列进行了分析。在固定胚胎中,染色体用dna特异性荧光染料4′,6-二氨基-2-苯基吲哚染色;通过高分辨率分析确定了后期染色体的排列。在活胚胎中,染色体在后期的行为是通过使用携带长易位染色体的菌株作为细胞学标记来鉴定染色体,而染色体通过罗丹明结合组蛋白微注射到胚胎中进行染色。在缺氧条件下人为膨胀的细胞核中,染色体排列也被检查,以使细胞核中的单个染色体更好地空间分离。这些实验一致表明,在黑腹果蝇的合胞胚胚中,同源染色体不相互关联。我们的研究还表明,当与成像技术结合使用时,细胞学工具极大地促进了核结构的解剖。
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引用次数: 1
Multiparameter image cytometry: From confocal micrographs to subcellular fluorograms 多参数图像细胞术:从共聚焦显微图到亚细胞荧光图
Pub Date : 1997-09-01 DOI: 10.1002/1361-6374(199709)5:3<159::AID-BIO10>3.3.CO;2-X
D. Demandolx, J. Davoust
Multifluorescence labeling is routinely performed to detect the spatial coincidence between several markers within biological specimens. We have recently developed image correlation methods to identify double fluorescent structures by virtue of local similarities between fluorescence distributions. We extend this approach here to analyze statistically the fluorescence distribution of structures of interest on micrographs. This digital cytometry relies mainly on the segmentation of multifluorescence images. Once identified, all objects are analyzed through a range of attributes estimating size, morphology, fluorescence content and mean colocalization level between fluorescence channels. The data sets which are saved in flow cytometry standard (FCS) files, allow multiparameter classification of objects and subpopulation counting. The combination of fluorescence, morphometric and local image correlation attributes has been applied here to compare the frequency of single- and multiple-labeled structures at the subcellular level.
多荧光标记通常用于检测生物标本中几个标记之间的空间重合。我们最近开发了图像相关方法,利用荧光分布之间的局部相似性来识别双荧光结构。我们在这里扩展了这种方法,以统计分析显微照片上感兴趣的结构的荧光分布。这种数字细胞术主要依赖于多荧光图像的分割。一旦被识别,所有的物体通过一系列属性来分析,估计大小、形态、荧光含量和荧光通道之间的平均共定位水平。数据集保存在流式细胞术标准(FCS)文件中,允许对对象进行多参数分类和亚群计数。结合荧光、形态计量学和局部图像相关属性,在亚细胞水平上比较了单标记和多标记结构的频率。
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引用次数: 22
Steps towards spatially resolved single molecule detection in solution 在溶液中实现空间分辨单分子检测的步骤
Pub Date : 1997-09-01 DOI: 10.1002/1361-6374(199709)5:3<116::AID-BIO5>3.3.CO;2-A
H. Mathis, G. Kalusche, B. Wagner, J. McCaskill
Spatially resolved single molecule detection in solution is a prerequisite for molecule tracking and provides new opportunities in single molecule manipulation, for example in a sample flow. A detector with fast timing properties and high spatial resolution is required for these purposes. We introduce a concept for spatially resolved optical single molecule detection in an epi-illuminated microscope using a novel kind of detector and a new algorithm in configurable hardware for intelligent data processing. The analysis is performed on a parallel hardware interface and includes burst detection. It can be extended to on-line spatial and temporal data analysis. This detector will be used in combination with a molecular sorter where molecules are sorted in a microstructured flow device made of silicon. In a first step towards such sorting in these microstructures, we show that a reliable detection of single molecules in silicon microstructures is possible in zero-dimensional detection volumes. The noise structure of the data is analysed in terms of Poissonian statistics and it is shown that in the smallest structure used (depth 20 μm) a signal-to-noise ratio of 40 is achieved.
溶液中的空间分辨单分子检测是分子跟踪的先决条件,并为单分子操作提供了新的机会,例如在样品流中。为此,需要一种具有快速定时特性和高空间分辨率的探测器。我们提出了一种利用新型检测器和可配置硬件进行智能数据处理的新算法在外延发光显微镜中进行空间分辨光学单分子检测的概念。分析是在并行硬件接口上进行的,包括突发检测。它可以扩展到在线时空数据分析。该探测器将与分子分选器结合使用,分子在硅制成的微结构流动装置中进行分选。在这些微结构中进行这种分选的第一步,我们表明可以在零维检测体积中可靠地检测硅微结构中的单分子。根据泊松统计分析了数据的噪声结构,结果表明,在最小的结构(深度为20 μm)中,信噪比达到40。
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引用次数: 10
Strategy for room temperature spectroscopy of single molecules 单分子室温光谱分析策略
Pub Date : 1997-09-01 DOI: 10.1002/1361-6374(199709)5:3<99::AID-BIO3>3.3.CO;2-N
T. Ha, D. Chemla, T. Enderle, S. Weiss
Laser-induced fluorescence (LIF) from single molecules at room temperature displays rich dynamics of reversible and irreversible transitions within the photodestruction lifetime of the molecule. In contrast to ensemble studies, these transitions are directly resolved when the fluorescence signal is monitored in time. We present a strategy and describe the instrumentation needed for spectroscopic studies on a large number of individual molecules. It is based on a computer controlled optical system which automatically and rapidly positions single molecules in the excitation volume of a confocal microscope and subsequently performs spectroscopic measurements. Examples for such spectroscopies are presented.
室温下单分子的激光诱导荧光(LIF)在分子的光破坏寿命内表现出丰富的可逆和不可逆转变动力学。与系综研究相反,当荧光信号被及时监测时,这些跃迁可以直接解决。我们提出了一种策略,并描述了对大量单个分子进行光谱研究所需的仪器。它是基于一个计算机控制的光学系统,该系统自动和快速地定位单个分子在共聚焦显微镜的激发体积,并随后进行光谱测量。给出了这种光谱的例子。
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引用次数: 4
Techniques for single molecule sequencing 单分子测序技术
Pub Date : 1997-09-01 DOI: 10.1002/1361-6374(199709)5:3<139::AID-BIO8>3.3.CO;2-R
K. Dörre, S. Brakmann, M. Brinkmeier, Kyung-Tae Han, K. Riebeseel, P. Schwille, J. Stephan, T. Wetzel, M. Lapczyna, M. Stuke, R. Bader, M. Hinz, H. Seliger, J. Holm, M. Eigen, R. Rigler
A method is described that demonstrates a new technique for rapid and high-throughput single molecule sequencing. This sequencing technique is based on the successive enzymatic degradation of fluorescently labeled single DNA molecules, and the detection and identification of the released monomer molecules according to their sequential order in a microstructured channel. The detection technique is evolved from confocal fluorescence microscopy, with two different laser sources to excite the individual mononucleotides that are either labeled with tetramethylrhodamine (TMR) or Cyanine5 (Cy5). The handling of DNA which is immobilized on carrier beads, and the detection of the cleaved monomers is performed in optically transparent and biochemically inert microstructures (glass or PMMA) with detection channels of 7 μ × 10 μm. The projected rate of sequencing is ≈100 bases min−1, dependent solely on the rate of the enzymatic DNA cleavage.
介绍了一种快速、高通量单分子测序的新方法。这种测序技术是基于连续的酶降解荧光标记的单个DNA分子,并根据其在微结构通道中的顺序检测和鉴定释放的单体分子。检测技术是从共聚焦荧光显微镜发展而来的,用两种不同的激光源来激发用四甲基罗丹明(TMR)或氰胺5 (Cy5)标记的单个单核苷酸。固定在载体珠上的DNA的处理和裂解单体的检测是在光学透明和生物化学惰性的微结构(玻璃或PMMA)中进行的,检测通道为7 μ × 10 μm。预计测序率为≈100个碱基min - 1,仅取决于酶促DNA切割的速率。
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引用次数: 60
期刊
Bioimaging
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