Pub Date : 2022-08-01DOI: 10.1063/1674-0068/cjcp2112246
Q. Wen, Haoxiang Xu, Yang Nan, Yuan Xie, D. Cheng
Our recent theoretical studies have screened out CuCs-doped Ag-based promising catalysts for ethylene epoxidation [ACS Catal. 11, 3371 (2021)]. The theoretical results were based on surface modeling, while in the actual reaction process Ag catalysts are particle shaped. In this work, we combine density functional theory (DFT), Wulff construction theory, and micro kinetic analysis to study the catalytic performance of Ag catalysts at the particle model. It demonstrates that the CuCs-doped Ag catalysts are superior to pure Ag catalysts in terms of selectivity and activity, which is further proved by experimental validation. The characterization analysis finds that both Cu and Cs dopant promote particle growth as well as particle dispersion, resulting in a grain boundary-rich Ag particle. Besides, CuCs also facilitate electrophilic atomic oxygen formation on catalyst surface, which is benefitial for ethylene oxide formation and desorption. Our work provides a case study for catalyst design by combining theory and experiment.
{"title":"Design of CuCs-doped Ag-based catalyst for ethylene epoxidation","authors":"Q. Wen, Haoxiang Xu, Yang Nan, Yuan Xie, D. Cheng","doi":"10.1063/1674-0068/cjcp2112246","DOIUrl":"https://doi.org/10.1063/1674-0068/cjcp2112246","url":null,"abstract":"Our recent theoretical studies have screened out CuCs-doped Ag-based promising catalysts for ethylene epoxidation [ACS Catal. 11, 3371 (2021)]. The theoretical results were based on surface modeling, while in the actual reaction process Ag catalysts are particle shaped. In this work, we combine density functional theory (DFT), Wulff construction theory, and micro kinetic analysis to study the catalytic performance of Ag catalysts at the particle model. It demonstrates that the CuCs-doped Ag catalysts are superior to pure Ag catalysts in terms of selectivity and activity, which is further proved by experimental validation. The characterization analysis finds that both Cu and Cs dopant promote particle growth as well as particle dispersion, resulting in a grain boundary-rich Ag particle. Besides, CuCs also facilitate electrophilic atomic oxygen formation on catalyst surface, which is benefitial for ethylene oxide formation and desorption. Our work provides a case study for catalyst design by combining theory and experiment.","PeriodicalId":10036,"journal":{"name":"Chinese Journal of Chemical Physics","volume":" ","pages":""},"PeriodicalIF":1.0,"publicationDate":"2022-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47515521","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-06-01DOI: 10.1063/1674-0068/cjcp2203053
Xueying Luo, Tiantian Xu, Xin Gao, Lu Zhang
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) relies on the central molecular machine RNA-dependent RNA polymerase (RdRp) for the viral replication and transcription. Remdesivir at the template strand has been shown to effectively inhibit the RNA synthesis in SARS-CoV-2 RdRp by deactivating not only the complementary UTP incorporation but also the next nucleotide addition. How-ever, the underlying molecular mechanism of the second inhibitory point remains unclear. In this work, we have performed molecular dynamics simulations and demonstrated that such inhibition has not directly acted on the nucleotide addition at the active site. Instead, the translocation of Remdesivir from + 1 to − 1 site is hindered thermodynamically as the post-translocation state is less stable than the pre-translocation state due to the motif B residue G683. Moreover, another conserved residue S682 on motif B further hinders the dynamic translocation of Remdesivir due to the steric clash with the 1′-cyano substitution. Overall, our study has unveiled an alternative role of motif B in mediating the translocation when Remdesivir is present in the template strand and complemented our understanding about the inhibitory mechanisms exerted by Remdesivir on the RNA synthesis in SARS-CoV-2 RdRp.
{"title":"Alternative role of motif B in template dependent polymerase inhibition","authors":"Xueying Luo, Tiantian Xu, Xin Gao, Lu Zhang","doi":"10.1063/1674-0068/cjcp2203053","DOIUrl":"https://doi.org/10.1063/1674-0068/cjcp2203053","url":null,"abstract":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) relies on the central molecular machine RNA-dependent RNA polymerase (RdRp) for the viral replication and transcription. Remdesivir at the template strand has been shown to effectively inhibit the RNA synthesis in SARS-CoV-2 RdRp by deactivating not only the complementary UTP incorporation but also the next nucleotide addition. How-ever, the underlying molecular mechanism of the second inhibitory point remains unclear. In this work, we have performed molecular dynamics simulations and demonstrated that such inhibition has not directly acted on the nucleotide addition at the active site. Instead, the translocation of Remdesivir from + 1 to − 1 site is hindered thermodynamically as the post-translocation state is less stable than the pre-translocation state due to the motif B residue G683. Moreover, another conserved residue S682 on motif B further hinders the dynamic translocation of Remdesivir due to the steric clash with the 1′-cyano substitution. Overall, our study has unveiled an alternative role of motif B in mediating the translocation when Remdesivir is present in the template strand and complemented our understanding about the inhibitory mechanisms exerted by Remdesivir on the RNA synthesis in SARS-CoV-2 RdRp.","PeriodicalId":10036,"journal":{"name":"Chinese Journal of Chemical Physics","volume":" ","pages":""},"PeriodicalIF":1.0,"publicationDate":"2022-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45036427","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-06-01DOI: 10.1063/1674-0068/cjcp2205090
Zhongfeng Li, Tuo Liu, Chunkai Xu, Xiangjun Chen
In this work, electron energy spectroscopic mapping of surface plasmon of Ag nanostructures on highly oriented pyrolytic graphite is reported. Benefitting from the angular dispersive feature of the present scanning probe electron energy spectrometer, a multi-channel detection mode is developed. By scanning along one direction, the two-dimensional intensity distribution of Ag surface plasmon excitation due to the collision of electron emitted from the tip can be obtained in parallel. The spectroscopic spatial resolution is determined to be around 80 nm.
{"title":"Electron energy spectroscopic mapping of surface plasmon by parallel scanning method","authors":"Zhongfeng Li, Tuo Liu, Chunkai Xu, Xiangjun Chen","doi":"10.1063/1674-0068/cjcp2205090","DOIUrl":"https://doi.org/10.1063/1674-0068/cjcp2205090","url":null,"abstract":"In this work, electron energy spectroscopic mapping of surface plasmon of Ag nanostructures on highly oriented pyrolytic graphite is reported. Benefitting from the angular dispersive feature of the present scanning probe electron energy spectrometer, a multi-channel detection mode is developed. By scanning along one direction, the two-dimensional intensity distribution of Ag surface plasmon excitation due to the collision of electron emitted from the tip can be obtained in parallel. The spectroscopic spatial resolution is determined to be around 80 nm.","PeriodicalId":10036,"journal":{"name":"Chinese Journal of Chemical Physics","volume":" ","pages":""},"PeriodicalIF":1.0,"publicationDate":"2022-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43141752","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-06-01DOI: 10.1063/1674-0068/cjcp2203038
Hongfeng Yu, Qiang Zhang, W. Zhuang
Antifreeze proteins (AFPs) inhibit ice re-crystallization by a mechanism remaining largely elusive. Dynamics of AFPs’ hydration water and its involvement in the antifreeze activity have not been identified conclusively. We herein, by simulation and theory, examined the water reorientation dynamics in the first hydration layer of an AFP from the spruce budworm, Choristoneura fumiferana, compared with a protein cytochrome P450 (CYP). The increase of potential acceptor water molecules around donor water molecules leads to the acceleration of hydrogen bond exchange between water molecules. Therefore, the jump reorientation of water molecules around the AFP active region is accelerated. Due to the mutual coupling and excitation of hydrogen bond exchange, with the acceleration of hydrogen bond exchange, the rearrangement of the hydrogen bond network and the frame reorientation of water are accelerated. Therefore, the water reorientation dynamics of AFP is faster than that of CYP. The results of this study provide a new physical image of antifreeze protein and a new understanding of the antifreeze mechanism of antifreeze proteins.
{"title":"Comparative analysis of hydration layer reorientation dynamics of antifreeze protein and protein cytochrome P450","authors":"Hongfeng Yu, Qiang Zhang, W. Zhuang","doi":"10.1063/1674-0068/cjcp2203038","DOIUrl":"https://doi.org/10.1063/1674-0068/cjcp2203038","url":null,"abstract":"Antifreeze proteins (AFPs) inhibit ice re-crystallization by a mechanism remaining largely elusive. Dynamics of AFPs’ hydration water and its involvement in the antifreeze activity have not been identified conclusively. We herein, by simulation and theory, examined the water reorientation dynamics in the first hydration layer of an AFP from the spruce budworm, Choristoneura fumiferana, compared with a protein cytochrome P450 (CYP). The increase of potential acceptor water molecules around donor water molecules leads to the acceleration of hydrogen bond exchange between water molecules. Therefore, the jump reorientation of water molecules around the AFP active region is accelerated. Due to the mutual coupling and excitation of hydrogen bond exchange, with the acceleration of hydrogen bond exchange, the rearrangement of the hydrogen bond network and the frame reorientation of water are accelerated. Therefore, the water reorientation dynamics of AFP is faster than that of CYP. The results of this study provide a new physical image of antifreeze protein and a new understanding of the antifreeze mechanism of antifreeze proteins.","PeriodicalId":10036,"journal":{"name":"Chinese Journal of Chemical Physics","volume":" ","pages":""},"PeriodicalIF":1.0,"publicationDate":"2022-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43987517","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-06-01DOI: 10.1063/1674-0068/cjcp2205089
Cong Wang, Lihan Zhang, Jian Liu, J. Shao
The imaginary time path integral formalism offers a powerful numerical tool for simulating thermodynamic properties of realistic systems. We show that, when second-order and fourth-order decompositions are employed, they share a remarkable unified analytic form for the partition function of the harmonic oscillator. We are then able to obtain the expression of the thermodynamic property and the leading error terms as well. In order to obtain reasonably optimal values of the free parameters in the generalized symmetric fourth-order decomposition scheme, we eliminate the leading error terms to achieve the accuracy of desired order for the thermodynamic property of the harmonic system. Such a strategy leads to an efficient fourth-order decomposition that produces third-order accurate thermodynamic properties for general systems.
{"title":"Generalized fourth-order decompositions of imaginary time path integral: Implications of the harmonic oscillator","authors":"Cong Wang, Lihan Zhang, Jian Liu, J. Shao","doi":"10.1063/1674-0068/cjcp2205089","DOIUrl":"https://doi.org/10.1063/1674-0068/cjcp2205089","url":null,"abstract":"The imaginary time path integral formalism offers a powerful numerical tool for simulating thermodynamic properties of realistic systems. We show that, when second-order and fourth-order decompositions are employed, they share a remarkable unified analytic form for the partition function of the harmonic oscillator. We are then able to obtain the expression of the thermodynamic property and the leading error terms as well. In order to obtain reasonably optimal values of the free parameters in the generalized symmetric fourth-order decomposition scheme, we eliminate the leading error terms to achieve the accuracy of desired order for the thermodynamic property of the harmonic system. Such a strategy leads to an efficient fourth-order decomposition that produces third-order accurate thermodynamic properties for general systems.","PeriodicalId":10036,"journal":{"name":"Chinese Journal of Chemical Physics","volume":" ","pages":""},"PeriodicalIF":1.0,"publicationDate":"2022-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48021392","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-06-01DOI: 10.1063/1674-0068/cjcp2109163
Binbin Xie, Ke Wang, Pei-Ke Jia, Xiangxuan Liu, G. Cui
Excited-state double proton transfer (ESDPT) is a controversial issue which has long been plagued with theoretical and experimental communities. Herein, we took 1,8-dihydroxy-2-naphthaldehyde (DHNA) as a prototype and used combined complete active space self-consistent field (CASSCF) and multi-state complete active-space second-order perturbation (MS-CASPT2) methods to investigate ES-DPT and excited-state deactivation pathways of DHNA. Three different tautomer minima of S1-ENOL, S1-KETO-1, and S1-KETO-2 and two crucial conical intersections of S1S0-KETO-1 and S1S0-KETO-2 in.and between the S0 and S1 states were obtained. S1-KETO-1 and S1-KETO-2 should take responsibility for experimentally observing dual-emission bands. In addition, two-dimensional potential energy surfaces (2D-PESs) and linear interpolated internal coordinate paths connecting relevant structures were calculated at the MS-CASPT2//CASSCF level and confirmed a stepwise ESDPT mechanism. Specifically, the first proton transfer from S1-ENOL to S1-KETO-1 is barrierless, whereas the second one from S1-KETO-1 to S1-KETO-2 demands a barrier of ca. 6.0 kcal/mol. The linear interpolated internal coordinate path connecting S1-KETO-1 (S1-KETO-2) and S1S0-KETO-1 (S1S0-KETO-2) is uphill with a barrier of ca. 12.0 kcal/mol, which will trap DHNA in the S1 state while therefore enabling dual-emission bands. On the other hand, the S1/S0 conical intersections would also prompt the S1 system to decay to the S0 state, which could be to certain extent suppressed by locking the rotation of the C5−C8−C9−O10 dihedral angle. These mechanistic insights are not only helpful for understanding ESDPT but also useful for designing novel molecular materials with excellent photoluminescent performances.
{"title":"Excited-state double proton transfer of 1,8-dihydroxy-2-naphthaldehyde: A MS-CASPT2//CASSCF study","authors":"Binbin Xie, Ke Wang, Pei-Ke Jia, Xiangxuan Liu, G. Cui","doi":"10.1063/1674-0068/cjcp2109163","DOIUrl":"https://doi.org/10.1063/1674-0068/cjcp2109163","url":null,"abstract":"Excited-state double proton transfer (ESDPT) is a controversial issue which has long been plagued with theoretical and experimental communities. Herein, we took 1,8-dihydroxy-2-naphthaldehyde (DHNA) as a prototype and used combined complete active space self-consistent field (CASSCF) and multi-state complete active-space second-order perturbation (MS-CASPT2) methods to investigate ES-DPT and excited-state deactivation pathways of DHNA. Three different tautomer minima of S1-ENOL, S1-KETO-1, and S1-KETO-2 and two crucial conical intersections of S1S0-KETO-1 and S1S0-KETO-2 in.and between the S0 and S1 states were obtained. S1-KETO-1 and S1-KETO-2 should take responsibility for experimentally observing dual-emission bands. In addition, two-dimensional potential energy surfaces (2D-PESs) and linear interpolated internal coordinate paths connecting relevant structures were calculated at the MS-CASPT2//CASSCF level and confirmed a stepwise ESDPT mechanism. Specifically, the first proton transfer from S1-ENOL to S1-KETO-1 is barrierless, whereas the second one from S1-KETO-1 to S1-KETO-2 demands a barrier of ca. 6.0 kcal/mol. The linear interpolated internal coordinate path connecting S1-KETO-1 (S1-KETO-2) and S1S0-KETO-1 (S1S0-KETO-2) is uphill with a barrier of ca. 12.0 kcal/mol, which will trap DHNA in the S1 state while therefore enabling dual-emission bands. On the other hand, the S1/S0 conical intersections would also prompt the S1 system to decay to the S0 state, which could be to certain extent suppressed by locking the rotation of the C5−C8−C9−O10 dihedral angle. These mechanistic insights are not only helpful for understanding ESDPT but also useful for designing novel molecular materials with excellent photoluminescent performances.","PeriodicalId":10036,"journal":{"name":"Chinese Journal of Chemical Physics","volume":"1 1","pages":""},"PeriodicalIF":1.0,"publicationDate":"2022-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"58525722","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-06-01DOI: 10.1063/1674-0068/cjcp2203039
Yanfang Ji, Quansong Li
Based on the boron-containing thermally activated delayed fluorescence (TADF) compound p-AC (AC: acridine) 5,9-dioxa-13b-boranaphtho [3,2,1-de] anthracene (a), a series of new TADF molecules b1−b4 were designed via adding two nitrogen atoms at the AC donor part. Density functional theory and time-dependent density functional theory calculations were performed on the frontier orbital energy levels, emission spectra, singlet-triplet states energy gaps (Δ EST), reverse intersystem crossing (RISC) rate constant ( kRISC) for compounds a and b1−b4. Our calculation results show that the maximum emission wavelengths of b1−b4 are significantly blue-shifted by 47−125 nm compared with that of a. Molecules b1 and b3 exhibit dark-blue emission, while molecules b2 and b4 display light-blue emission, indicating that these four derivatives could be potential organic light-emitting diode (OLED) candidates with blue-light emitting. Moreover, we found the RISC processes in a, b2, and b4 can occur not only from T1 state to S1 state, but also from T2 state to S1 state significantly, while the RISC processes in b1 and b3 mainly take place via the T2→S1 hot exciton way. Importantly, the T1→S1 kRISC values of b2 and b4 are predicted to be two to three times of that of a, indicating enhanced TADF property. Our results not only provide two promising boron-based TADF candidates (b2 and b4), but also offer useful theoretical basis for the design of blue OLED materials.
{"title":"Boron-containing thermally activated delayed blue fluorescence materials via donor tuning: A theoretical study","authors":"Yanfang Ji, Quansong Li","doi":"10.1063/1674-0068/cjcp2203039","DOIUrl":"https://doi.org/10.1063/1674-0068/cjcp2203039","url":null,"abstract":"Based on the boron-containing thermally activated delayed fluorescence (TADF) compound p-AC (AC: acridine) 5,9-dioxa-13b-boranaphtho [3,2,1-de] anthracene (a), a series of new TADF molecules b1−b4 were designed via adding two nitrogen atoms at the AC donor part. Density functional theory and time-dependent density functional theory calculations were performed on the frontier orbital energy levels, emission spectra, singlet-triplet states energy gaps (Δ EST), reverse intersystem crossing (RISC) rate constant ( kRISC) for compounds a and b1−b4. Our calculation results show that the maximum emission wavelengths of b1−b4 are significantly blue-shifted by 47−125 nm compared with that of a. Molecules b1 and b3 exhibit dark-blue emission, while molecules b2 and b4 display light-blue emission, indicating that these four derivatives could be potential organic light-emitting diode (OLED) candidates with blue-light emitting. Moreover, we found the RISC processes in a, b2, and b4 can occur not only from T1 state to S1 state, but also from T2 state to S1 state significantly, while the RISC processes in b1 and b3 mainly take place via the T2→S1 hot exciton way. Importantly, the T1→S1 kRISC values of b2 and b4 are predicted to be two to three times of that of a, indicating enhanced TADF property. Our results not only provide two promising boron-based TADF candidates (b2 and b4), but also offer useful theoretical basis for the design of blue OLED materials.","PeriodicalId":10036,"journal":{"name":"Chinese Journal of Chemical Physics","volume":" ","pages":""},"PeriodicalIF":1.0,"publicationDate":"2022-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47838231","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-04-28DOI: 10.1007/s11274-022-03281-w
María Celina Zabaloy, Marco Allegrini, Keren Hernandez Guijarro, Filipe Behrends Kraemer, Héctor Morrás, Leonardo Erijman
Glyphosate (N-(phosphonomethyl)glycine) has emerged as the top-selling herbicide worldwide because of its versatility in controlling annual and perennial weeds and the extensive use of glyphosate-resistant crops. Concerns related to the widespread use of glyphosate and its ubiquitous presence in the environment has led to a large number of studies and reviews, which examined the toxicity and fate of glyphosate and its major metabolite, aminomethylphosphonic acid (AMPA) in the environment. Because the biological breakdown of glyphosate is most likely the main elimination process, the biodegradation of glyphosate has also been the object of abundant experimental work. Importantly, glyphosate biodegradation in aquatic and soil ecosystems is affected not only by the composition and the activity of microbial communities, but also by the physical environment. However, the interplay between microbiomes and glyphosate biodegradation in edaphic and aquatic environments has rarely been considered before. The proposed minireview aims at filling this gap. We summarize the most recent work exploring glyphosate biodegradation in natural aquatic biofilms, the biological, chemical and physical factors and processes playing on the adsorption, transport and biodegradation of glyphosate at different levels of soil organization and under different agricultural managements, and its impact on soil microbial communities.
{"title":"Microbiomes and glyphosate biodegradation in edaphic and aquatic environments: recent issues and trends.","authors":"María Celina Zabaloy, Marco Allegrini, Keren Hernandez Guijarro, Filipe Behrends Kraemer, Héctor Morrás, Leonardo Erijman","doi":"10.1007/s11274-022-03281-w","DOIUrl":"10.1007/s11274-022-03281-w","url":null,"abstract":"<p><p>Glyphosate (N-(phosphonomethyl)glycine) has emerged as the top-selling herbicide worldwide because of its versatility in controlling annual and perennial weeds and the extensive use of glyphosate-resistant crops. Concerns related to the widespread use of glyphosate and its ubiquitous presence in the environment has led to a large number of studies and reviews, which examined the toxicity and fate of glyphosate and its major metabolite, aminomethylphosphonic acid (AMPA) in the environment. Because the biological breakdown of glyphosate is most likely the main elimination process, the biodegradation of glyphosate has also been the object of abundant experimental work. Importantly, glyphosate biodegradation in aquatic and soil ecosystems is affected not only by the composition and the activity of microbial communities, but also by the physical environment. However, the interplay between microbiomes and glyphosate biodegradation in edaphic and aquatic environments has rarely been considered before. The proposed minireview aims at filling this gap. We summarize the most recent work exploring glyphosate biodegradation in natural aquatic biofilms, the biological, chemical and physical factors and processes playing on the adsorption, transport and biodegradation of glyphosate at different levels of soil organization and under different agricultural managements, and its impact on soil microbial communities.</p>","PeriodicalId":10036,"journal":{"name":"Chinese Journal of Chemical Physics","volume":"22 1","pages":"98"},"PeriodicalIF":0.0,"publicationDate":"2022-04-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"82963383","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-04-01DOI: 10.1063/1674-0068/cjcp2111230
A. Zhou, Zhiqiang Fu, X.-M. Cao, Yufen Zhao, Yong Wang
The divergent behavior of C−H bond oxidations of aliphatic substrates compared to those of aromatic substrates shown in Gupta's experiment was mechanistically studied herein by means of density functional theory calculations. Our calculations reveal that such difference is caused by different reaction mechanisms between two kinds of substrates (the aliphatic cyclohexane, 2,3-dimethylbutane and the aromatic toluene, ethylbenzene and cumene). For the aliphatic substrates, C−H oxidation by the oxidant FeV(O)(TAML) is a hydrogen atom transfer process; whereas for the aromatic substrates, C−H oxidation is a proton-coupled electron transfer (PCET) process with a proton transfer character on the transition state, that is, a proton-coupled electron transfer process holding a proton transfer-like transition state (PCET(PT)). This difference is caused by the strong π− π interactions between the tetra-anionic TAML ring and the phenyl ring of the aromatic substrates, which has a “pull” effect to make the electron transfer from substrates to the Fe=O moiety inefficient.
{"title":"A mechanistic switch in C−H bond activation by elusive FeV(O)(TAML) reaction intermediate: A theoretical study","authors":"A. Zhou, Zhiqiang Fu, X.-M. Cao, Yufen Zhao, Yong Wang","doi":"10.1063/1674-0068/cjcp2111230","DOIUrl":"https://doi.org/10.1063/1674-0068/cjcp2111230","url":null,"abstract":"The divergent behavior of C−H bond oxidations of aliphatic substrates compared to those of aromatic substrates shown in Gupta's experiment was mechanistically studied herein by means of density functional theory calculations. Our calculations reveal that such difference is caused by different reaction mechanisms between two kinds of substrates (the aliphatic cyclohexane, 2,3-dimethylbutane and the aromatic toluene, ethylbenzene and cumene). For the aliphatic substrates, C−H oxidation by the oxidant FeV(O)(TAML) is a hydrogen atom transfer process; whereas for the aromatic substrates, C−H oxidation is a proton-coupled electron transfer (PCET) process with a proton transfer character on the transition state, that is, a proton-coupled electron transfer process holding a proton transfer-like transition state (PCET(PT)). This difference is caused by the strong π− π interactions between the tetra-anionic TAML ring and the phenyl ring of the aromatic substrates, which has a “pull” effect to make the electron transfer from substrates to the Fe=O moiety inefficient.","PeriodicalId":10036,"journal":{"name":"Chinese Journal of Chemical Physics","volume":" ","pages":""},"PeriodicalIF":1.0,"publicationDate":"2022-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43874591","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-04-01DOI: 10.1063/1674-0068/cjcp2110182
Sujun Ji, Zhiling Ding, Hang Yin, Daoyuan Zheng, Jin-feng Zhao
The interactions of complexes of XeOF2 and XeO3 with a series of different hybridization N-containing donors are studied by means of DFT and MP2 calculations. The aerogen bonding interaction energies range from 6.5 kcal/mol to 19.9 kcal/mol between XeO3 or XeOF2 and typical N-containing donors. The sequence of interaction for N-containing hybridization is sp3>sp2>sp, and XeO3 is higher than XeOF2. For some donors of sp2 and sp3 hybridization, the steric effect plays a minor role in the interaction with the evidence of reduced density gradient plots. The dominant stable part is the electrostatic interaction. In complex of XeO3, the weight of polarization is larger than dispersion, while the situation is opposite for XeOF2 complexes. Except for the sum of the maximum value of molecular electrostatic potential on Xe atom and minimum value of molecular electrostatic potential on N atom, the otherfive interaction parameters including the potential energy density at bond critical point, the equilibrium distances, interaction energies with the basis set superposition error correction, localized molecular orbital energy decomposition analysis interaction energies, and the electron charge density, show great linear correlation coefficients with each other.
{"title":"Theoretical study on Xe⋯N non-covalent interactions: Three hybridization N with XeO3 and XeOF2","authors":"Sujun Ji, Zhiling Ding, Hang Yin, Daoyuan Zheng, Jin-feng Zhao","doi":"10.1063/1674-0068/cjcp2110182","DOIUrl":"https://doi.org/10.1063/1674-0068/cjcp2110182","url":null,"abstract":"The interactions of complexes of XeOF2 and XeO3 with a series of different hybridization N-containing donors are studied by means of DFT and MP2 calculations. The aerogen bonding interaction energies range from 6.5 kcal/mol to 19.9 kcal/mol between XeO3 or XeOF2 and typical N-containing donors. The sequence of interaction for N-containing hybridization is sp3>sp2>sp, and XeO3 is higher than XeOF2. For some donors of sp2 and sp3 hybridization, the steric effect plays a minor role in the interaction with the evidence of reduced density gradient plots. The dominant stable part is the electrostatic interaction. In complex of XeO3, the weight of polarization is larger than dispersion, while the situation is opposite for XeOF2 complexes. Except for the sum of the maximum value of molecular electrostatic potential on Xe atom and minimum value of molecular electrostatic potential on N atom, the otherfive interaction parameters including the potential energy density at bond critical point, the equilibrium distances, interaction energies with the basis set superposition error correction, localized molecular orbital energy decomposition analysis interaction energies, and the electron charge density, show great linear correlation coefficients with each other.","PeriodicalId":10036,"journal":{"name":"Chinese Journal of Chemical Physics","volume":" ","pages":""},"PeriodicalIF":1.0,"publicationDate":"2022-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48891928","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
京公网安备 11010802042870号
京ICP备2023020795号-1
扫码关注我们
求助内容：
应助结果提醒方式：