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The parameter inversion in coupled geomechanics and flow simulations using Bayesian inference 基于贝叶斯推理的地质力学与渗流耦合模拟中的参数反演
Pub Date : 2023-08-24 DOI: 10.1016/j.jcmds.2023.100083
Juarez S. Azevedo , Jarbas A. Fernandes

In many situations, uncertainty about the mechanical properties of surrounding soils due to the lack of data and spatial variations requires tools that involve the study of parameters by means of random variables or random functions. Usually only a few measurements of parameters, such as permeability or porosity, are available to build a model, and some measurements of the geomechanical behavior, such as displacements, stresses, and strains are needed to check/calibrate the model. In order to introduce this type of modeling in geomechanical analysis, taking into account the random nature of soil parameters, Bayesian inference techniques are implemented in highly heterogeneous porous media. Within the framework of a coupling algorithm, these are incorporated into the inverse poroelasticity problem, with porosity, permeability and Young modulus treated as stationary random fields obtained by the moving average (MA) method. To this end, the Metropolis–Hasting (MH) algorithm was chosen to seek the geomechanical parameters that yield the lowest misfit. Numerical simulations related to injection problems and fluid withdrawal in a 3D domain are performed to compare the performance of this methodology. We conclude with some remarks about numerical experiments.

在许多情况下,由于缺乏数据和空间变化,周围土壤的力学性质存在不确定性,需要使用通过随机变量或随机函数研究参数的工具。通常只有一些参数的测量值,如渗透率或孔隙度,可用于建立模型,并且需要一些地质力学行为的测量值(如位移、应力和应变)来检查/校准模型。为了在地质力学分析中引入这种类型的建模,考虑到土壤参数的随机性,在高度不均匀的多孔介质中实现了贝叶斯推理技术。在耦合算法的框架内,这些被纳入反孔弹性问题中,孔隙度、渗透率和杨氏模量被视为通过移动平均(MA)方法获得的平稳随机场。为此,选择Metropolis–Hasting(MH)算法来寻找产生最低失配的地质力学参数。在三维域中进行了与注入问题和流体抽取相关的数值模拟,以比较该方法的性能。最后,我们对数值实验做了一些评论。
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引用次数: 0
Fast discrete Laplace transforms 快速离散拉普拉斯变换
Pub Date : 2023-08-01 DOI: 10.1016/j.jcmds.2023.100082
Yen Lee Loh

The discrete Laplace transform (DLT) with M inputs and N outputs has a nominal computational cost of O(MN). There are approximate DLT algorithms with O(M+N) cost such that the output errors divided by the sum of the inputs are less than a fixed tolerance η. However, certain important applications of DLTs require a more stringent accuracy criterion, where the output errors divided by the true output values are less than η. We present a fast DLT algorithm combining two strategies. The bottom-up strategy exploits the Taylor expansion of the Laplace transform kernel. The top-down strategy chooses groups of terms in the DLT to include or neglect, based on the whole summand, and not just on the Laplace transform kernel. The overall effort is O(M+N) when the source and target points are very dense or very sparse, and appears to be O((M+N)1.5) in the intermediate regime. Our algorithm achieves the same accuracy as brute-force evaluation, and is typically 10–100 times faster.

具有M个输入和N个输出的离散拉普拉斯变换(DLT)具有O(MN)的标称计算成本。存在具有O(M+N)代价的近似DLT算法,使得输出误差除以输入之和小于固定容差η。然而,DLT的某些重要应用需要更严格的精度标准,其中输出误差除以真实输出值小于η。我们提出了一种结合两种策略的快速DLT算法。自下而上的策略利用拉普拉斯变换核的泰勒展开。自上而下的策略选择DLT中的项组来包括或忽略,这是基于整个被加数,而不仅仅是基于拉普拉斯变换核。当源点和目标点非常密集或非常稀疏时,总体努力是O(M+N),并且在中间状态下看起来是O((M+N)1.5)。我们的算法实现了与蛮力评估相同的准确性,通常速度快10-100倍。
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引用次数: 1
Usage of the Kullback–Leibler divergence on posterior Dirichlet distributions to create a training dataset for a learning algorithm to classify driving behaviour events 使用后验Dirichlet分布上的Kullback–Leibler散度为学习算法创建训练数据集,以对驾驶行为事件进行分类
Pub Date : 2023-08-01 DOI: 10.1016/j.jcmds.2023.100081
M. Cesarini , E. Brentegani , G. Ceci , F. Cerreta , D. Messina , F. Petrarca , M. Robutti

Information theory uses the Kullback–Leibler divergence to compare distributions. In this paper, we apply it to bayesian posterior distributions and we show how it can be used to train a machine learning algorithm as well. The data sample used in this study is an OCTOTelematics set of driving behaviour data.

信息论使用Kullback–Leibler散度来比较分布。在本文中,我们将其应用于贝叶斯后验分布,并展示了如何使用它来训练机器学习算法。本研究中使用的数据样本为OCTOTelematics驾驶行为数据集。
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引用次数: 0
Solving the Dirichlet problem for the Monge–Ampère equation using neural networks 用神经网络求解Monge–Ampère方程的Dirichlet问题
Pub Date : 2023-08-01 DOI: 10.1016/j.jcmds.2023.100080
Kaj Nyström, Matias Vestberg

The Monge–Ampère equation is a full y nonlinear partial differential equation (PDE) of fundamental importance in analysis, geometry and in the applied sciences. In this paper we solve the Dirichlet problem associated with the Monge–Ampère equation using neural networks and we show that an ansatz using deep input convex neural networks can be used to find the unique convex solution. As part of our analysis we study the effect of singularities, discontinuities and noise in the source function, we consider nontrivial domains, and we investigate how the method performs in higher dimensions. We investigate the convergence numerically and present error estimates based on a stability result. We also compare this method to an alternative approach in which standard feed-forward networks are used together with a loss function which penalizes lack of convexity.

Monge–Ampère方程是一个全y非线性偏微分方程(PDE),在分析、几何和应用科学中具有重要意义。在本文中,我们使用神经网络解决了与Monge–Ampère方程相关的Dirichlet问题,并证明了使用深度输入凸神经网络的ansatz可以用于找到唯一的凸解。作为分析的一部分,我们研究了源函数中奇点、不连续性和噪声的影响,我们考虑了非平凡域,并研究了该方法在更高维度上的表现。我们在数值上研究了收敛性,并给出了基于稳定性结果的误差估计。我们还将该方法与另一种方法进行了比较,在该方法中,标准前馈网络与惩罚缺乏凸性的损失函数一起使用。
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引用次数: 0
A Steffensen type optimal eighth order multiple root finding scheme for nonlinear equations 非线性方程的Steffensen型最优八阶多重寻根格式
Pub Date : 2023-06-01 DOI: 10.1016/j.jcmds.2023.100079
Fiza Zafar , Sofia Iqbal , Tahira Nawaz

In this study, we introduce a novel weight function-based eighth order derivative-free method for locating repeated roots of nonlinear equations. It is a three-step Steffensen-type scheme with first order divided differences in place of the first order derivatives. It is noteworthy that so far only few eighth order derivative free multiple root finding scheme exist in literature. Different nonlinear standard and applications based nonlinear functions are used to demonstrate the applicability of the suggested approach and to confirm its strong convergence tendency. Drawing basins of attraction on the graphical regions demonstrates how the offered family of approaches converge.

在本研究中,我们引入了一种新的基于权函数的无八阶导数的非线性方程重根定位方法。它是一个用一阶微分代替一阶微分的三步steffensen型格式。值得注意的是,目前文献中只有很少的八阶导数自由重根查找格式。通过不同的非线性标准和基于非线性函数的应用,证明了该方法的适用性,并证实了该方法的强收敛性。在图形区域上绘制吸引力盆地说明了所提供的一系列方法如何收敛。
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引用次数: 1
Towards Deep Interpretable Features 走向深层可解释特征
Pub Date : 2023-01-01 DOI: 10.1016/j.jcmds.2022.100067
Robert Hu, Dino Sejdinovic

The problem of interpretability for binary image classification is considered through the lens of kernel two-sample tests and generative modeling. A feature extraction framework coined Deep Interpretable Features is developed, which is used in combination with IntroVAE, a generative model capable of high-resolution image synthesis. Experimental results on a variety of datasets, including COVID-19 chest x-rays demonstrate the benefits of combining deep generative models with the ideas from kernel-based hypothesis testing in moving towards more robust interpretable deep generative models.

从核两样本检验和生成建模的角度考虑了二值图像分类的可解释性问题。开发了一个被称为“深度可解释特征”的特征提取框架,该框架与IntroVAE(一种能够进行高分辨率图像合成的生成模型)结合使用。包括新冠肺炎胸部x光片在内的各种数据集的实验结果表明,将深度生成模型与基于核的假设测试的思想相结合,有助于实现更强大的可解释深度生成模型。
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引用次数: 1
Distance geometry for word representations and applications 单词表示和应用的距离几何
Pub Date : 2023-01-01 DOI: 10.1016/j.jcmds.2022.100073
Sammy Khalife , Douglas S. Gonçalves , Leo Liberti

Many machine learning methods used for the treatment of sequential data often rely on the construction of vector representations of unitary entities (e.g. words in natural language processing, or k-mers in bioinformatics). Traditionally, these representations are constructed with optimization formulations arising from co-occurrence based models. In this work, we propose a new method to embed these entities based on the Distance Geometry Problem: find object positions based on a subset of their pairwise distances or inner products. Considering the empirical Pointwise Mutual Information as a surrogate for the inner product, we discuss two Distance Geometry based algorithms to obtain word vector representations. The main advantage of such algorithms is their significantly lower computational complexity in comparison with state-of-the-art word embedding methods, which allows us to obtain word vector representations much faster. Furthermore, numerical experiments indicate that our word vectors behave quite well on text classification tasks in natural language processing as well as regression tasks in bioinformatics.

用于处理序列数据的许多机器学习方法通常依赖于酉实体的向量表示的构建(例如,自然语言处理中的单词,或生物信息学中的k-mers)。传统上,这些表示是用基于共现的模型产生的优化公式来构建的。在这项工作中,我们提出了一种基于距离几何问题嵌入这些实体的新方法:基于它们的成对距离或内积的子集来查找对象位置。考虑到经验点互信息作为内积的代理,我们讨论了两种基于距离几何的算法来获得词向量表示。与最先进的单词嵌入方法相比,这种算法的主要优点是其计算复杂度显著降低,这使我们能够更快地获得单词向量表示。此外,数值实验表明,我们的词向量在自然语言处理中的文本分类任务以及生物信息学中的回归任务中表现得很好。
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引用次数: 0
Complex dynamics of two prey–one predator model together with fear effect and harvesting efforts in preys 两个猎物的复杂动力学——一个捕食者模型以及猎物的恐惧效应和收获努力
Pub Date : 2023-01-01 DOI: 10.1016/j.jcmds.2022.100071
Ashok Mondal , A.K. Pal , G.P. Samanta

In this paper, a two prey–one predator model with different types of growth rate and mixed functional responses is proposed and analysed. Moreover, we considered anti-predation behaviour and constant harvesting effort in both the prey populations. The positivity and boundedness of the system are studied. The criteria for the extinction of the predator–prey populations are discussed. Analytically, we have studied the criteria for existence and stability of different equilibrium points. In addition, we have derived sufficient conditions for local bifurcations such as transcritical and Hopf bifurcation. We discussed that the effect of fear not only reduces prey populations, but also decreases the rate of growth of the predator population. Computer simulations are performed to validate our analytical results. The biological implications of analytical and numerical results are critically discussed.

本文提出并分析了一个具有不同类型生长率和混合功能反应的两食一捕食者模型。此外,我们还考虑了两种猎物群体的反捕食行为和持续的捕捞努力。研究了系统的正性和有界性。讨论了捕食者-猎物种群灭绝的标准。在分析上,我们研究了不同平衡点存在和稳定的准则。此外,我们还导出了局部分岔的充分条件,如跨临界分岔和Hopf分岔。我们讨论了恐惧的影响不仅会减少猎物的数量,还会降低捕食者数量的增长率。进行计算机模拟以验证我们的分析结果。对分析和数值结果的生物学意义进行了批判性的讨论。
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引用次数: 0
On Newton’s Rule of signs 关于牛顿符号规则
Pub Date : 2023-01-01 DOI: 10.1016/j.jcmds.2023.100076
Emil M. Prodanov

Analysing the cubic sectors of a real polynomial of degree n, a modification of Newton’s Rule of signs is proposed with which stricter upper bound on the number of real roots can be found. A new necessary condition for reality of the roots of a polynomial is also proposed. Relationship between the quadratic elements of the polynomial is established through its roots and those of its derivatives. Some aspects of polynomial discriminants are also discussed — the relationship between the discriminants of real polynomials, the discriminants of their derivatives, and the quadratic elements, following a “discriminant of the discriminant” approach.

通过分析n次实多项式的三次扇区,提出了对牛顿符号规则的一种修正,用它可以找到实根数的更严格上界。还提出了多项式根实性的一个新的必要条件。多项式的二次元素之间的关系是通过它的根和它的导数的根来建立的。还讨论了多项式判别式的一些方面——实多项式的判别式、其导数的判别式和二次元素之间的关系,遵循“判别式的判别式”方法。
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引用次数: 0
JoMIC: A joint MI-based filter feature selection method JoMIC:一种基于MI的联合滤波器特征选择方法
Pub Date : 2023-01-01 DOI: 10.1016/j.jcmds.2023.100075
Khumukcham Robindro , Urikhimbam Boby Clinton , Nazrul Hoque , Dhruba K. Bhattacharyya

Feature selection (FS) is a common preprocessing step of machine learning that selects informative subset of features which fuels a model to perform better during prediction or classification. It helps in the design of an intelligent and expert system used in computer vision, image processing, gene expression data analysis, intrusion detection and natural language processing. In this paper, we introduce an effective filter method called Joint Mutual Information with Class relevance (JoMIC) using multivariate Joint Mutual Information (JMI) and Mutual Information (MI). Our method considers both JMI and MI of a non selected feature with selected ones w.r.t a given class to select a feature that is highly relevant to the class but non redundant to other selected features. We compare our method with seven other filter-based methods using the machine learning classifiers viz., Logistic Regression, Support Vector Machine, K-nearest Neighbor (KNN), Decision Tree, Random Forest, Naïve Bayes, and Stochastic Gradient Descent on various datasets. Experimental results reveal that our method yields better performance in terms of accuracy, Matthew’s Correlation Coefficient (MCC) and F1-score over 16 benchmark datasets, as compared to other competent methods. The superiority of our proposed method is that it uses an effective objective function that combines both JMI and MI to choose the relevant and non redundant features.

特征选择(FS)是机器学习的一个常见预处理步骤,它选择信息丰富的特征子集,为模型在预测或分类过程中表现更好提供燃料。它有助于设计一个用于计算机视觉、图像处理、基因表达数据分析、入侵检测和自然语言处理的智能专家系统。在本文中,我们介绍了一种有效的过滤方法,称为具有类相关性的联合互信息(JoMIC),使用多元联合互信息和互信息。我们的方法考虑了一个非选定特征的JMI和MI,以及给定类的选定特征,以选择与该类高度相关但与其他选定特征不冗余的特征。我们将我们的方法与其他七种使用机器学习分类器的基于滤波器的方法进行了比较,即在各种数据集上的Logistic回归、支持向量机、K-最近邻(KNN)、决策树、随机森林、朴素贝叶斯和随机梯度下降。实验结果表明,与其他有能力的方法相比,我们的方法在16个基准数据集上的准确性、Matthew相关系数(MCC)和F1分数方面具有更好的性能。我们提出的方法的优势在于,它使用了一个有效的目标函数,该函数结合了JMI和MI来选择相关和非冗余的特征。
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引用次数: 2
期刊
Journal of Computational Mathematics and Data Science
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