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A review on the selection criteria for the truncated SVD in Data Science applications 数据科学应用中截断奇异值分解的选择标准综述
Pub Date : 2022-12-01 DOI: 10.1016/j.jcmds.2022.100064
Antonella Falini

The Singular Value Decomposition (SVD) is one of the most used factorizations when it comes to Data Science applications. In particular, given the big size of the processed matrices, in most of the cases, a truncated SVD algorithm is employed. In the following manuscript, we review some of the state-of-the-art approaches considered for the selection of the number of components (i.e., singular values) to retain to apply the truncated SVD. Moreover, three new approaches based on the Kullback–Leibler divergence and on unsupervised anomaly detection algorithms, are introduced. The revised methods are then compared on some standard benchmarks in the image processing context.

当涉及到数据科学应用程序时,奇异值分解(SVD)是最常用的分解之一。特别是,考虑到处理的矩阵的大尺寸,在大多数情况下,使用截断的SVD算法。在下面的手稿中,我们回顾了一些最先进的方法,用于选择保留的组件(即奇异值)的数量,以应用截断的奇异值分解。此外,还介绍了基于Kullback-Leibler散度和无监督异常检测算法的三种新方法。然后在图像处理环境中的一些标准基准上对修订后的方法进行比较。
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引用次数: 4
Effects of viscous dissipation and thermal radiation on time dependent incompressible squeezing flow of CuO−Al2O3/water hybrid nanofluid between two parallel plates with variable viscosity 黏性耗散和热辐射对变黏度平行板间CuO−Al2O3/水混合纳米流体不可压缩压缩流动的影响
Pub Date : 2022-12-01 DOI: 10.1016/j.jcmds.2022.100062
O.A. Famakinwa, O.K. Koriko, K.S. Adegbie

In view of the dominant properties of hybrid nanofluid such as high thermal and electrical conductivity in addition to enhanced heat transfer rate, efforts had been strengthened by many researchers to upgrade the thermal behavior of the base fluid through different approaches. In this study, viscous dissipation and thermal radiation effects on unsteady incompressible squeezing flow conveying CuOAl2O3/water hybrid nanoparticles between two aligned surfaces with variable viscosity is examined. The fluid model is transformed to ordinary differential equations by incorporating appropriate similarity transformation. The numerical simulation is carried out in MATLAB software package via shooting procedure coupled with 4th order Runge–Kutta integration scheme. The limiting case is found to be in accord relative to the preceding reports. The outcomes of the scrutiny are unveiled in tables and graphs. It was revealed that the velocity and temperature augment with increasing viscosity variation and squeezing fluid parameters. Meanwhile, increasing viscous dissipation and thermal radiation parameters decrease the temperature distribution with no significant change in the fluid velocity.

鉴于混合纳米流体具有高导热、高导电性和高传热率等主要特性,许多研究人员通过不同的方法来提升基流体的热行为。在这项研究中,粘性耗散和热辐射对非定常不可压缩压缩流动输送CuO−Al2O3/水杂化纳米颗粒在两个排列的可变粘度表面之间的影响进行了研究。通过适当的相似变换,将流体模型转化为常微分方程。在MATLAB软件包中通过射击程序结合四阶龙格-库塔积分方案进行数值模拟。发现极限情况与前面的报告是一致的。审查的结果以表格和图表的形式呈现出来。结果表明,速度和温度随黏度变化和挤压流体参数的增大而增大。同时,增加粘性耗散和热辐射参数会降低温度分布,但流体速度变化不明显。
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引用次数: 11
Variably Scaled Persistence Kernels (VSPKs) for persistent homology applications 用于持久同构应用程序的可变缩放持久化内核(vspk)
Pub Date : 2022-08-01 DOI: 10.1016/j.jcmds.2022.100050
Stefano De Marchi , Federico Lot , Francesco Marchetti , Davide Poggiali

In recent years, various kernels have been proposed in the context of persistent homology to deal with persistence diagrams in supervised learning approaches. In this paper, we consider the idea of variably scaled kernels, for approximating functions and data, and we interpret it in the framework of persistent homology. We call them Variably Scaled Persistence Kernels (VSPKs). These new kernels are then tested in different classification experiments. The obtained results show that they can improve the performance and the efficiency of existing standard kernels.

近年来,在持续同源的背景下,人们提出了各种各样的核算法来处理监督学习方法中的持续图。本文考虑了变尺度核的思想,用于逼近函数和数据,并在持久同调的框架下对其进行了解释。我们称之为可变缩放持久性内核(VSPKs)。然后在不同的分类实验中对这些新核进行测试。实验结果表明,它们可以提高现有标准核的性能和效率。
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引用次数: 2
Reducing the Gibbs effect in multimodal medical imaging by the Fake Nodes approach 假淋巴结法减少多模态医学成像中的吉布斯效应
Pub Date : 2022-08-01 DOI: 10.1016/j.jcmds.2022.100040
Davide Poggiali , Diego Cecchin , Stefano De Marchi

It is a common practice in multimodal medical imaging to undersample the anatomically-derived segmentation images to measure the mean activity of a co-acquired functional image. This practice avoids the resampling-related Gibbs effect that would occur in oversampling the functional image. As sides effect, waste of time and efforts are produced since the anatomical segmentation at full resolution is performed in many hours of computations or manual work. In this work we explain the commonly-used resampling methods and give errors bound in the cases of continuous and discontinuous signals. Then we propose a Fake Nodes scheme for image resampling designed to reduce the Gibbs effect when oversampling the functional image. This new approach is compared to the traditional counterpart in two significant experiments, both showing that Fake Nodes resampling gives smaller errors at the cost of an higher computational time.

在多模态医学成像中,对解剖学衍生的分割图像进行欠采样以测量共同获得的功能图像的平均活动是一种常见的做法。这种做法避免了在对功能图像进行过采样时可能出现的与重采样相关的吉布斯效应。作为副作用,由于在许多小时的计算或手工工作中进行全分辨率的解剖分割,产生了时间和精力的浪费。本文解释了常用的重采样方法,并给出了连续和不连续信号情况下的误差界。然后,我们提出了一种伪节点的图像重采样方案,旨在减少过采样时的吉布斯效应。在两个重要的实验中,将这种新方法与传统方法进行了比较,两者都表明假节点重采样以更高的计算时间为代价给出了更小的误差。
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引用次数: 1
Deep learning, stochastic gradient descent and diffusion maps 深度学习,随机梯度下降和扩散图
Pub Date : 2022-08-01 DOI: 10.1016/j.jcmds.2022.100054
Carmina Fjellström, Kaj Nyström

Stochastic gradient descent (SGD) is widely used in deep learning due to its computational efficiency, but a complete understanding of why SGD performs so well remains a major challenge. It has been observed empirically that most eigenvalues of the Hessian of the loss functions on the loss landscape of over-parametrized deep neural networks are close to zero, while only a small number of eigenvalues are large. Zero eigenvalues indicate zero diffusion along the corresponding directions. This indicates that the process of minima selection mainly happens in the relatively low-dimensional subspace corresponding to the top eigenvalues of the Hessian. Although the parameter space is very high-dimensional, these findings seems to indicate that the SGD dynamics may mainly live on a low-dimensional manifold. In this paper, we pursue a truly data driven approach to the problem of getting a potentially deeper understanding of the high-dimensional parameter surface, and in particular, of the landscape traced out by SGD by analyzing the data generated through SGD, or any other optimizer for that matter, in order to possibly discover (local) low-dimensional representations of the optimization landscape. As our vehicle for the exploration, we use diffusion maps introduced by R. Coifman and coauthors.

随机梯度下降(SGD)由于其计算效率而被广泛应用于深度学习,但完全理解SGD为何表现如此出色仍然是一个主要挑战。经验观察到,在过参数化深度神经网络的损失图上,损失函数的Hessian特征值大部分接近于零,只有少数特征值较大。零特征值表示沿相应方向的零扩散。这表明最小值选择过程主要发生在Hessian的顶特征值所对应的相对低维子空间中。虽然参数空间是非常高维的,但这些发现似乎表明SGD动力学可能主要存在于低维流形上。在本文中,我们追求一种真正的数据驱动方法来解决这个问题,即通过分析SGD或任何其他优化器生成的数据,对高维参数曲面,特别是SGD跟踪的景观进行潜在的更深入的理解,以便可能发现优化景观的(局部)低维表示。作为我们探索的工具,我们使用了R. Coifman及其合作者介绍的扩散图。
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引用次数: 0
Optimal learning of Markov k-tree topology 马尔可夫k树拓扑的最优学习
Pub Date : 2022-08-01 DOI: 10.1016/j.jcmds.2022.100046
Di Chang , Liang Ding , Russell Malmberg , David Robinson , Matthew Wicker , Hongfei Yan , Aaron Martinez , Liming Cai

The seminal work of Chow and Liu (1968) shows that approximation of a finite probabilistic system by Markov trees can achieve the minimum information loss with the topology of a maximum spanning tree. Our current paper generalizes the result to Markov networks of tree-width k, for every fixed k2. In particular, we prove that approximation of a finite probabilistic system with such Markov networks has the minimum information loss when the network topology is achieved with a maximum spanning k-tree. While constructing a maximum spanning k-tree is intractable for even k=2, we show that polynomial algorithms can be ensured by a sufficient condition accommodated by many meaningful applications. In particular, we show an efficient algorithm for learning the optimal topology of higher order correlations among random variables that belong to an underlying linear structure. As an application, we demonstrate effectiveness of this efficient algorithm applied to biomolecular 3D structure prediction.

Chow和Liu(1968)的开创性工作表明,用马尔可夫树逼近有限概率系统可以用最大生成树的拓扑实现最小的信息损失。本文将结果推广到树宽≤k的马尔可夫网络,对于每一个固定k≥2。特别地,我们证明了当网络拓扑具有最大生成k树时,用这种马尔可夫网络逼近有限概率系统具有最小的信息损失。当k=2时构造最大生成k树是困难的,我们证明多项式算法可以通过许多有意义的应用所容纳的充分条件来保证。特别是,我们展示了一种有效的算法,用于学习属于底层线性结构的随机变量之间高阶相关性的最优拓扑。作为一个应用,我们证明了该算法在生物分子三维结构预测中的有效性。
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引用次数: 7
Understanding the assumptions of an SEIR compartmental model using agentization and a complexity hierarchy 理解使用代理和复杂性层次结构的SEIR分区模型的假设
Pub Date : 2022-08-01 DOI: 10.1016/j.jcmds.2022.100056
Elizabeth Hunter, John D. Kelleher

Equation-based and agent-based models are popular methods in understanding disease dynamics. Although there are many types of equation-based models, the most common is the SIR compartmental model that assumes homogeneous mixing and populations. One way to understand the effects of these assumptions is by agentization. Equation-based models can be agentized by creating a simple agent-based model that replicates the results of the equation-based model, then by adding complexity to these agentized models it is possible to break the assumptions of homogeneous mixing and populations and test how breaking these assumptions results in different outputs. We report a set of experiments comparing the outputs of an SEIR model and a set of agent-based models of varying levels of complexity, using as a case study a measles outbreak in a town in Ireland. We define and use a six level complexity hierarchy for agent-based models to create a set of progressively more complex variants of an agentized SEIR model for the spread of infectious disease. We then compare the results of the agent-based model at each level of complexity with results of the SEIR model to determine when the agentization breaks. Our analysis shows this occurs on the fourth step of complexity, when scheduled movements are added into the model. When agents networks and behaviours are complex the peak of the outbreak is shifted to the right and is lower than in the SEIR model suggesting that heterogeneous populations and mixing patterns lead to slower outbreaks compared homogeneous populations and mixing patterns.

基于方程和智能体的模型是理解疾病动力学的常用方法。尽管有许多类型的基于方程的模型,但最常见的是假定均匀混合和种群的SIR隔室模型。理解这些假设的影响的一种方法是代理。基于方程的模型可以通过创建一个简单的基于代理的模型来进行代理,该模型可以复制基于方程的模型的结果,然后通过增加这些代理模型的复杂性,可以打破均匀混合和种群的假设,并测试打破这些假设会如何导致不同的输出。我们报告了一组实验,比较了SEIR模型和一组不同复杂程度的基于主体的模型的输出,并以爱尔兰一个城镇的麻疹爆发为例进行了研究。我们为基于主体的模型定义并使用了六层复杂性层次结构,以创建传染病传播的代理SEIR模型的一组逐渐变得更复杂的变体。然后,我们将基于代理的模型在每个复杂级别上的结果与SEIR模型的结果进行比较,以确定代理何时中断。我们的分析表明,这发生在复杂性的第四个步骤,当预定的动作被添加到模型中时。当病原体网络和行为复杂时,暴发的峰值向右移动并且低于SEIR模型,这表明与均匀种群和混合模式相比,异质种群和混合模式导致的暴发速度较慢。
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引用次数: 2
Computational treatment of MHD Maxwell nanofluid flow across a stretching sheet considering higher-order chemical reaction and thermal radiation 考虑高阶化学反应和热辐射的MHD麦克斯韦纳米流体流过拉伸片的计算处理
Pub Date : 2022-08-01 DOI: 10.1016/j.jcmds.2022.100048
Rajib Biswas , Md. Shahadat Hossain , Rafiqul Islam , Sarder Firoz Ahmmed , S.R. Mishra , Mohammad Afikuzzaman

The present analysis reports a computational study of Magnetohydrodynamic (MHD) flow behaviour of 2D Maxwell nanofluid across a stretched sheet in appearance of Brownian motion. The substantial term thermal radiation and chemical reactions have been employed extensively in the current research. Nanofluids are usually chosen by researchers because of their rheological properties, which are important in determining their appropriateness for convective heat transfer. The present research reveals that the fluid velocity augments for the enhanced values of all the parameters. Heat source, as well as the radiation parameters, ensure that there is enough heat in the fluid, which implies escalation of the thermal boundary layer thickness by accruing radiation parameter. Moreover, streamlines and isotherms have been investigated for the different parametric values. The suggested model is valuable because it has a wide range of applications in domains including medical sciences (treatment of cancer therapeutics), microelectronics, biomedicine, biology, and industrial production processes.

本分析报告了二维麦克斯韦纳米流体在布朗运动外观下通过拉伸片的磁流体动力学(MHD)流动行为的计算研究。在目前的研究中,热辐射和化学反应已被广泛应用。研究人员通常选择纳米流体是因为它们的流变特性,这对于决定它们是否适合对流换热是很重要的。研究表明,流体速度随各参数的增大值而增大。热源和辐射参数确保流体中有足够的热量,这意味着通过累积辐射参数来增加热边界层厚度。此外,还研究了不同参数值下的流线和等温线。所建议的模型很有价值,因为它在医学(癌症疗法的治疗)、微电子学、生物医学、生物学和工业生产过程等领域具有广泛的应用。
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引用次数: 27
Thermodynamic analysis of a tangent hyperbolic hydromagnetic heat generating fluid in quadratic Boussinesq approximation 二次Boussinesq近似下正切双曲磁流体热流体的热力学分析
Pub Date : 2022-08-01 DOI: 10.1016/j.jcmds.2022.100058
A.R. Hassan , S.O. Salawu , A.B. Disu , O.R. Aderele

The current investigation is to examine the compound impact of electromagnetic induced force and internal heat source on a tangent hyperbolic fluid in quadratic Boussinesq approximation. The current hyperbolic tangent liquid flow and heat transport formulation model adequately predicts and characterizes the shear-stricken event. The nonlinear dimensionless heat transfer flow equations are solved completely using weighted residual solution procedures coupled with Galerkin approximation integration approach. The results in the table and graphs revealed that the magnetic field strength has a substantial impact on the fluid flow and heat propagation, as well as the internal heat source. Therefore, the entropy generation is optimized through an enhanced thermodynamic equilibrium and adequate control of heat generating terms and energy loss.

本文研究了电磁感应力和内部热源对正切双曲流体的二次近似复合影响。目前的双曲切线流体流动和热输运公式模型充分地预测和表征了剪切灾害事件。采用加权残馀解法结合伽辽金近似积分法对非线性无量纲换热流动方程进行了完整求解。表格和图表的结果表明,磁场强度对流体的流动和热传播以及内部热源有很大的影响。因此,通过增强热力学平衡和充分控制产热项和能量损失来优化熵的产生。
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引用次数: 8
Detection of anomalies in the proximity of a railway line: A case study 铁路附近异常的检测:一个案例研究
Pub Date : 2022-08-01 DOI: 10.1016/j.jcmds.2022.100052
Pierluigi Amodio , Marcello De Giosa , Felice Iavernaro , Roberto La Scala , Arcangelo Labianca , Monica Lazzo , Francesca Mazzia , Lorenzo Pisani

A point cloud describing a railway environment is considered in a case study aimed at presenting a workflow for the automatic detection of external objects that, coming too close to the railway infrastructure, may cause potential risks for its correct functioning. The approach combines classical semantic segmentation methodologies with a novel geometric and numerical procedure to define a region of interest, consisting of a lower tube enveloping the 3D space occupied by the train during its transit and an upper tube enclosing the overhead contact lines. One useful application could be automatic vegetation monitoring in the proximity of the railway structure, which would help with planning maintenance pruning activities.

在一个案例研究中,考虑了一个描述铁路环境的点云,该案例研究旨在展示一个用于自动检测外部物体的工作流程,这些物体过于靠近铁路基础设施,可能会对其正确运行造成潜在风险。该方法将经典的语义分割方法与新颖的几何和数值过程相结合,以定义感兴趣的区域,包括包围列车在运输过程中所占用的三维空间的下管和包围架空接触线的上管。一个有用的应用可能是铁路结构附近的植被自动监测,这将有助于规划维护修剪活动。
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引用次数: 0
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Journal of Computational Mathematics and Data Science
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