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Identification and modeling of calcium dynamics in cardiac myocytes 心肌细胞钙动力学的鉴定和建模
Pub Date : 2000-04-15 DOI: 10.1016/S0928-4869(00)00012-4
Y. Hamam , F. Pecker , F. Rocaries , H. Lorino , C. Pavoine , R. Natowicz

Calcium plays an essential role as a messenger and as a factor in cardiac contraction. In the present study, a model for Ca2+ handling in cardiac cells is presented. After the identification of the sarcoplasmic reticulum (SR) parameters, the SERCA pump and ryanodine channels activities, a comparison is made between experimental and calculated responses. The model's parameters were identified using optimization methods. This identification is based on the response of the digitonin permeabilized cells. The model deals with the dynamics of the calcium exchange between the different compartments of the cell. Cell compartments involved are the SR, the cytosol and the extra-cellular medium. The different components of the mathematical models are discussed and compared. The modeling and simulation are run within Ψlab,1 a freeware for modeling and simulation of dynamic systems.

钙作为信使和心脏收缩的因素起着至关重要的作用。在本研究中,Ca2+处理在心脏细胞的模型提出。在确定了肌浆网(SR)参数、SERCA泵和ryanodine通道活性后,将实验响应与计算响应进行了比较。采用优化方法对模型参数进行了辨识。这种鉴定是基于洋地黄苷渗透细胞的反应。该模型处理的是细胞不同区室之间钙交换的动力学。涉及的细胞区室包括SR、细胞质和细胞外培养基。对数学模型的不同组成部分进行了讨论和比较。建模和仿真是在Ψlab中运行的,1是一个用于动态系统建模和仿真的免费软件。
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引用次数: 7
3D mesh generation to solve the electrical volume conduction problem in the implanted inner ear 三维网格生成,解决植入内耳的电体积传导问题
Pub Date : 2000-04-15 DOI: 10.1016/S0928-4869(00)00007-0
Jeroen J. Briaire, Johan H.M. Frijns

Cochlear implants are used to restore hearing in the profoundly deaf [Th.J. Balkany, Otolaryngol. Clin. North. Am. 19 (2) (1986) 215–449] by direct electrical stimulation of the auditory nerve. To study the working mechanism of cochlear implants and to provide a tool to develop better ones, a Boundary Element electrical volume conduction model of the cochlea (the auditory part of the inner ear) has been constructed. In this paper first a short comparison of the available numerical methods is given, then an algorithm is presented with which different cochlear geometries can be constructed and fitted with different types of cochlear implants. With the resulting model the potential distributions induced by the implant can be calculated, and a prediction of the effect of the implant can be made. The use of the meshing algorithm is not restricted to cochlear implants, but is also applicable in other fields.

人工耳蜗被用来恢复深度失聪患者的听力。巴尔,Otolaryngol。中国。北方。Am. 19(2)(1986) 215-449]通过直接电刺激听神经。为了研究人工耳蜗的工作机制,并为开发更好的人工耳蜗提供工具,建立了耳蜗(内耳听觉部分)的边界元电体积传导模型。本文首先对现有的数值方法进行了简要的比较,然后提出了一种算法,该算法可以构造不同的耳蜗几何形状并与不同类型的耳蜗植入物相匹配。利用所建立的模型可以计算出种植体诱导的电位分布,并对种植体的效果进行预测。网格划分算法的应用不仅局限于人工耳蜗,也适用于其他领域。
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引用次数: 30
Modeling and Simulation in Biology and Medicine: Contribution to Model Driven Methodology 生物学和医学中的建模和仿真:对模型驱动方法学的贡献
Pub Date : 2000-04-15 DOI: 10.1016/S0928-4869(00)00018-5
Yskandar Hamam
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引用次数: 2
Modeling of interstitial fluid pressure in solid tumor 实体瘤组织间液压力的建模
Pub Date : 2000-04-15 DOI: 10.1016/S0928-4869(00)00003-3
Jani Pusenjak, Damijan Miklavcic

Interstitial fluid pressure (IFP) is one of the main obstacles for macromolecular agents uptake and distribution in solid tumors. It has been demonstrated to reduce effectiveness of different macromolecular agents used in in vivo anti-tumor therapies, which on the other hand showed very good anti-tumor properties in in vitro conditions [L.T. Baxter, R.K. Jain, Microvascular Research 37 (1989) 77–104]. With an appropriate model we demonstrated the correlation between different physiological properties of solid tumor and IFP. The model which we present showed high correlation with results from literature and thus represents a good simulation of physiological processes that govern fluid dynamics in solid tumors. One of the potential uses of presented model is drafting of future experiments which would lead to more effective chemo- or immuno-therapy of solid tumors. This model could also serve as an aid to the interpretation of different experimental results concerning IFP.

间质液压力(IFP)是阻碍大分子药物在实体肿瘤中摄取和分布的主要障碍之一。它已被证明可以降低体内抗肿瘤治疗中使用的不同大分子药物的有效性,另一方面,这些药物在体外条件下显示出非常好的抗肿瘤特性[L.T.陈晓明,陈晓明,陈晓明。微血管研究[j]。通过适当的模型,我们证明了实体瘤的不同生理特性与IFP之间的相关性。我们提出的模型与文献结果高度相关,因此很好地模拟了控制实体肿瘤流体动力学的生理过程。提出的模型的一个潜在用途是为未来的实验起草,这将导致更有效的化学或免疫治疗实体瘤。该模型也可用于解释有关IFP的不同实验结果。
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引用次数: 20
Filtering in adaptive control of distributed parameter bioreactors in the presence of noisy measurements 分布参数生物反应器在噪声测量下的滤波自适应控制
Pub Date : 2000-04-15 DOI: 10.1016/S0928-4869(00)00011-2
J Czeczot , M Metzger , J.P Babary , M Nihtilä

This paper deals with simulation experiments on the model-based adaptive control of the distributed parameter bioreactor in the presence of the measurement noise. Since in such cases the adaptive controller itself is not able to ensure good control performance, there is a need to propose more sophisticated application. It is based on the first-order digital low-pass filters and allows us to decrease the influence of the measurement noise on the control performance. In order to decrease this influence it is possible to adjust three parameters of the application: controller tuning parameter, forgetting factor for the estimation of the substrate consumption rate and time constant of the low-pass filters. Simulation results, presented in this paper, have been obtained for different values of these parameters and, based on these results, it is possible to propose a robust application for the adaptive control of the bioreactor with optimally chosen values of the adjustable parameters. This application can be suggested to be applied in the adaptive control of a real industrial distributed parameter bioreactor with noisy measurement data.

本文对存在测量噪声的分布式参数生物反应器进行了基于模型的自适应控制仿真实验。由于在这种情况下,自适应控制器本身不能保证良好的控制性能,因此有必要提出更复杂的应用。它基于一阶数字低通滤波器,使我们能够减少测量噪声对控制性能的影响。为了减少这种影响,可以调整应用程序的三个参数:控制器调谐参数,用于估计基板消耗率的遗忘因子和低通滤波器的时间常数。本文给出了这些参数的不同值的仿真结果,并基于这些结果,可以为生物反应器的自适应控制提供鲁棒应用,以选择最优的可调参数值。该方法可应用于实际工业分布式参数生物反应器的自适应控制。
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引用次数: 24
Quantitative human gait analysis 定量人体步态分析
Pub Date : 2000-04-15 DOI: 10.1016/S0928-4869(00)00014-8
V. Zanchi, V. Papić, M. Cecić

In this paper, the methodology for normal gait recognition and estimation is described. Normal gait recognition is derived on the basis of kinematics data of the human locomotion system. Measurements were carried out and the data were processed and statistically analyzed.

The procedure was done on a group of 20 students. Kinematics data have been presented in phase plane. Sets of data in phase plane for the specific discrete moments in time were statistically processed using the Gaussian and Bootstrap methods. Discrete moments are chosen according to specific gait phases of a gait cycle. Finally, as a result of statistical analysis, the gait quality index (GQI) is obtained for each gait phase.

本文描述了正常步态的识别和估计方法。正常步态识别是在人体运动系统运动学数据的基础上导出的。进行测量,对数据进行处理和统计分析。这项手术是在20名学生身上进行的。运动学数据以相平面表示。采用高斯和Bootstrap方法对特定离散时刻的相平面数据集进行统计处理。根据步态周期的特定步态阶段选择离散矩。最后,通过统计分析得到各步态阶段的步态质量指数(GQI)。
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引用次数: 20
Modelling and identification of eye–hand dynamics 眼手动力学建模与辨识
Pub Date : 2000-04-15 DOI: 10.1016/S0928-4869(00)00010-0
Mikuláš Alexı́k

Human behaviour in manual control especially in transport systems has some non-linearities such as saturation, delay dead band and so on. In this paper, the standard model of human operator is analysed from the viewpoint of system identification. Therefore, some procedures for the identification of the human behaviour model are developed from available data. These procedures are validated by application according to experimental data from laboratory experiments with human tracking of the various stimuli for a step, sinusoidal and pseudo-random target movement. The simulation experiment results had shown that the simple linear model of human behaviour describes it for a wide area of behaviour. Used linear model of the operator is suitable only for a step response type of target movement. To track a time-varying input signal, a non-linear model needs to be used. The paper concludes with a recommendation for further identification methods for a non-linear model of the human operator.

在手动控制特别是运输系统中,人的行为具有一些非线性,如饱和、延时死区等。本文从系统辨识的角度分析了人类操作者的标准模型。因此,一些识别人类行为模型的程序是从现有数据中开发出来的。通过实验数据验证了这些方法的有效性,这些实验数据来自于人类对步进、正弦和伪随机目标运动的各种刺激的跟踪。仿真实验结果表明,简单的线性人类行为模型描述了广泛的行为领域。所使用的算子线性模型只适用于阶跃响应类型的目标运动。为了跟踪时变输入信号,需要使用非线性模型。最后,对人类操作者非线性模型的进一步识别方法提出了建议。
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引用次数: 24
Metabolic reconstruction using shortest paths 利用最短路径进行代谢重建
Pub Date : 2000-04-15 DOI: 10.1016/S0928-4869(00)00006-9
Masanori Arita

This paper introduces a graph-oriented representation of metabolism, and shows how to apply the shortest path algorithm to reconstruct metabolic pathways. Our metabolic model is constructed from molecular structures of compounds and reaction formulas of enzymes, and its output is all the logically possible pathways consisting of input reactions. We also show how to integrate putative reactions in the model.

本文介绍了一种面向图形的代谢表示,并展示了如何应用最短路径算法来重建代谢路径。我们的代谢模型是根据化合物的分子结构和酶的反应公式构建的,它的输出是由输入反应组成的所有逻辑上可能的途径。我们还展示了如何在模型中整合假定的反应。
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引用次数: 66
Modelling and distributed simulation of asynchronous hardware 异步硬件的建模与分布式仿真
Pub Date : 2000-03-15 DOI: 10.1016/S0928-4869(00)00005-7
Georgios K. Theodoropoulos

Synchronous VLSI design is approaching a critical point, with clock distribution becoming an increasingly costly and complicated issue and power consumption rapidly emerging as a major concern. Hence, recently, there has been a resurgence of interest in asynchronous digital design techniques as they promise to liberate VLSI systems from clock skew problems, offer the potential for low power and high performance and encourage a modular design philosophy which makes incremental technological migration a much easier task. This activity has revealed a need for modelling and simulation techniques suitable for the asynchronous design style. Contributing to the quest for modelling and simulation techniques suitable for asynchronous design, and motivated by the increasing debate regarding the potential of CSP for this purpose, this paper investigates the suitability of occam, a CSP-based programming language, for the modelling and simulation of complex asynchronous systems. A generic modelling framework is introduced and issues arising from the parallel semantics of CSP/occam when the latter is employed to perform simulation are addressed.

同步VLSI设计正接近一个临界点,时钟分配变得越来越昂贵和复杂,功耗迅速成为一个主要问题。因此,最近,人们对异步数字设计技术的兴趣重新抬头,因为它们有望将VLSI系统从时钟倾斜问题中解放出来,提供低功耗和高性能的潜力,并鼓励模块化设计理念,使增量技术迁移变得更加容易。这一活动揭示了对适合异步设计风格的建模和仿真技术的需求。为了寻求适合异步设计的建模和仿真技术,并受到关于CSP为此目的潜力的日益激烈的辩论的推动,本文研究了occam(一种基于CSP的编程语言)用于复杂异步系统建模和仿真的适用性。介绍了一个通用的建模框架,并解决了CSP/occam在使用CSP/occam进行仿真时产生的并行语义问题。
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引用次数: 8
Artificial neural networks in vibration control of rotor-bearing systems 人工神经网络在转子-轴承系统振动控制中的应用
Pub Date : 2000-03-15 DOI: 10.1016/S0928-4869(00)00004-5
Yaagoub N. Al-Nassar, Mohsin Siddiqui, Ahmed Z. Al-Garni

A neural network controller is described and implemented for controlling the vibration of a rotor-bearing system. A multi-layered neural network is used to model the inverse dynamics or the rotor-bearing system on-line. It is learnt by a backpropagation algorithm, and a delta rule, in which the difference between the actual control input to the plant, which is generated from the neural controller, and the input estimated from the inverse-dynamics model by using an actual plant output, is minimized. The results show a satisfactory diminished response of the rotor-bearing system when the controller is applied to the system.

描述并实现了一种用于控制转子-轴承系统振动的神经网络控制器。采用多层神经网络对转子-轴承系统的逆动力学进行在线建模。它是通过反向传播算法和delta规则来学习的,其中由神经控制器生成的植物的实际控制输入与使用实际植物输出从逆动力学模型估计的输入之间的差异是最小的。结果表明,当该控制器应用于系统时,转子-轴承系统的响应得到了满意的减小。
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引用次数: 3
期刊
Simulation Practice and Theory
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