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Machine learning guided structural dynamics identifies translation elongation factor 1 (EEF1A1) as an immunological biomarker and marine natural products as therapeutic leads for rheumatoid arthritis with major depressive disorder 机器学习引导结构动力学识别翻译延伸因子1 (EEF1A1)作为免疫生物标志物和海洋天然产物作为类风湿关节炎伴重度抑郁症的治疗线索
IF 6.3 2区 医学 Q1 BIOLOGY Pub Date : 2026-02-15 Epub Date: 2026-01-16 DOI: 10.1016/j.compbiomed.2026.111480
Santhiya Panchalingam , Govindaraju Kasivelu , Manikandan Jayaraman , Jeyakanthan Jeyaraman
Rheumatoid arthritis (RA) is a systemic autoimmune disease that predominantly affects synovial joints, especially those of the hands, elbows, wrists, knees, and shoulders. RA frequently co-occurs with major depressive disorder (MDD), amplifying disease burden and complicating clinical outcomes. This study employed a multi-step integrative bioinformatics and structural biology framework to identify candidate molecular biomarkers for RA and MDD. Differential gene expression analysis and weighted gene co-expression network analysis (WGCNA) were performed on the epitranscriptomic dataset. These analyses identified immune-regulatory gene modules that were significantly associated with both phenotypes. Least absolute shrinkage and selection operator (LASSO) regression was applied to select strong, statistically significant biomarkers. The methylated biomarker EEF1A1 was identified, and its structure predicted via AlphaFold, was subjected to in silico structure-based virtual screening (SBVS) against the Comprehensive Marine Natural Product Database (CMNPD). Four marine natural products (CMNPD17984, CMNPD27318, CMNPD26200, and CMNPD26011) showed significant binding affinity for EEF1A1. Furthermore, EEF1A1-MNP complexes were simulated for 150 ns using GROMACS, and PCA-based free energy landscape (FEL) analyses were performed to characterize the dynamic behavior and identify energy minima. This integrated computational approach provides a comprehensive platform for biomarker discovery and validation in RA and MDD, with potential applications in early diagnosis, therapeutic targeting, and precision medicine.
类风湿性关节炎(RA)是一种系统性自身免疫性疾病,主要影响滑膜关节,特别是手、肘关节、手腕、膝盖和肩膀。RA经常与重度抑郁症(MDD)共同发生,加重了疾病负担并使临床结果复杂化。本研究采用多步骤综合生物信息学和结构生物学框架来确定RA和MDD的候选分子生物标志物。对表转录组数据集进行差异基因表达分析和加权基因共表达网络分析(WGCNA)。这些分析确定了与两种表型显著相关的免疫调节基因模块。最小绝对收缩和选择算子(LASSO)回归应用于选择强的,具有统计学意义的生物标志物。鉴定了甲基化的生物标志物EEF1A1,并通过AlphaFold预测了其结构,并针对综合海洋天然产品数据库(CMNPD)进行了基于硅结构的虚拟筛选(SBVS)。四种海洋天然产物(CMNPD17984、CMNPD27318、CMNPD26200和CMNPD26011)对EEF1A1具有显著的结合亲和力。此外,利用GROMACS对EEF1A1-MNP配合物进行了150 ns的模拟,并进行了基于pca的自由能景观(FEL)分析,以表征其动态行为并识别能量最小值。这种综合计算方法为RA和MDD的生物标志物发现和验证提供了全面的平台,在早期诊断、治疗靶向和精准医学方面具有潜在的应用前景。
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引用次数: 0
Dementia severity index: A threshold-based approach to classifying dementia levels using resting state EEG 痴呆严重程度指数:一种基于阈值的方法来分类痴呆水平使用静息状态脑电图
IF 6.3 2区 医学 Q1 BIOLOGY Pub Date : 2026-02-15 Epub Date: 2026-01-27 DOI: 10.1016/j.compbiomed.2026.111505
Shivani Ranjan , Robin Badal , Pramod Yadav , Lalan Kumar

Background

Alzheimer’s Disease (AD) and FrontoTemporal Dementia (FTD) are dementia conditions that often overlap clinically, leading to misdiagnoses. Traditional questionnaires are subjective and time-intensive, while neuroimaging is costly and less accessible. EEG-based methods offer a cost-effective alternative but primarily focus on spectral and source analyses, with a limited exploration into quantitative range identification for differentiating dementia states.

Methods

This study presents a threshold-based approach to dementia-level classification using resting-state EEG. In particular, an algorithm is presented for threshold computation followed by Dementia Severity Index (DSI) formulation. Two potential biomarkers for cognitive decline that capture band-specific alterations are explored. These biomarkers form the basis of the DSI, categorizing individuals into AD, FTD, or Healthy Control (HC). The classification performance of the proposed DSI is evaluated comprehensively using multiple machine learning classifiers and subject validation strategies.

Results

The proposed DSI-based approach achieves classification accuracies of 81.62% using kNN. The approach reliability is validated across three diverse EEG datasets and through threshold variation analysis. Furthermore, the relationship between EEG features and cognitive performance is analyzed using Spearman’s correlation. A significant correlation of 0.79 and 0.62 is obtained between predicted and actual MMSE.

Conclusion

The proposed DSI effectively differentiates AD, FTD, and HC, providing a robust threshold-based framework for dementia assessment. It enhances interpretability by assigning quantitative values to dementia states and reduces subjective reliance. This study offers a potential EEG-based biomarker suitable for clinical settings, offering minimal stress to patients during assessments.
阿尔茨海默病(AD)和额颞叶痴呆(FTD)是临床上经常重叠的痴呆疾病,导致误诊。传统的问卷调查是主观的、耗时的,而神经成像既昂贵又不易获得。基于脑电图的方法提供了一种具有成本效益的替代方法,但主要侧重于光谱和源分析,对区分痴呆状态的定量范围识别的探索有限。方法提出了一种基于阈值的静息状态脑电图痴呆水平分类方法。特别是,提出了一种阈值计算算法,然后制定痴呆严重程度指数(DSI)。探索了两个潜在的认知衰退生物标志物,它们可以捕获特定波段的改变。这些生物标志物构成了DSI的基础,将个体分为AD、FTD或健康控制(HC)。使用多个机器学习分类器和主题验证策略对所提出的DSI的分类性能进行了综合评估。结果基于dsi的kNN分类准确率达到81.62%。通过三种不同的EEG数据集和阈值变异分析验证了该方法的可靠性。在此基础上,利用Spearman相关分析了脑电特征与认知能力的关系。预测MMSE与实际MMSE的相关系数分别为0.79和0.62。结论提出的DSI可有效区分AD、FTD和HC,为痴呆评估提供了一个稳健的基于阈值的框架。它通过为痴呆状态分配定量值来增强可解释性,并减少主观依赖。这项研究提供了一种潜在的适合临床环境的基于脑电图的生物标志物,在评估过程中为患者提供最小的压力。
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引用次数: 0
Transformer-based feature extraction approach for hematopoietic cancer subtype classification 基于变压器特征提取的造血癌亚型分类方法。
IF 6.3 2区 医学 Q1 BIOLOGY Pub Date : 2026-02-15 Epub Date: 2026-01-19 DOI: 10.1016/j.compbiomed.2026.111466
Kwang Ho Park , Younghee Lee , Wei Ding , Kwang Sun Ryu , Keun Ho Ryu
Accurate classification of hematopoietic cancer subtypes remains challenging due to the multipotent nature of hematopoietic cells and the absence of definitive genetic markers. To address this, we propose a Transformer-based Autoencoder that captures compact and biologically informative embeddings from gene expression data. Specifically, our method employs multi-head self-attention in the encoder to learn complex nonlinear interactions among genes, with a reconstruction decoder that enforces biological feature retention. We benchmarked our approach against four widely-used feature extraction methods—Principal Component Analysis, Non-negative Matrix Factorization, Autoencoder, and Variational Autoencoder—using transcriptomic data from five hematopoietic cancer subtypes in The Cancer Genome Atlas, totaling 2452 samples. Data were split 60:20:20 into training, validation, and test sets with stratification, and feature-extractor hyperparameters were chosen on the validation set. Each method produced 100-dimensional feature vectors, subsequently evaluated using eight multi-class classifiers: Light Gradient Boosting Machine, Extreme Gradient Boosting, Logistic Regression, Random Forest, Decision Tree, Support Vector Machine, and Neural Networks. On the independent test set, the Transformer-based Autoencoder embeddings combined with Light Gradient Boosting Machine achieved F1-score: 0.969, accuracy: 0.986, precision: 0.975, recall: 0.964, specificity: 0.996, G-mean: 0.980, and balanced accuracy: 0.954. For context, we additionally included a supervised tabular Transformer (FT-Transformer) as a reference; while strong, it is not directly comparable to our unsupervised feature extractor. To enhance interpretability and clinical relevance, we applied Shapley Additive exPlanations to identify the twenty most influential genes contributing to subtype discrimination. This analysis revealed key biomarkers related to endoplasmic reticulum function, antigen processing, and ribonucleic acid regulation. These findings demonstrate that transformer-based unsupervised feature extraction substantially improves predictive accuracy and yields valuable biological insights for complex hematologic malignancies. Overall, the study supports attention-driven representation learning for tabular biomedical data and motivates future work in generative/self-supervised representations for gene expression.
由于造血细胞的多能性和缺乏明确的遗传标记,对造血癌亚型的准确分类仍然具有挑战性。为了解决这个问题,我们提出了一个基于转换器的自编码器,它可以从基因表达数据中捕获紧凑的生物信息嵌入。具体来说,我们的方法在编码器中使用多头自注意来学习基因之间复杂的非线性相互作用,并使用重建解码器来强制保留生物特征。我们将我们的方法与四种广泛使用的特征提取方法——主成分分析、非负矩阵分解、自编码器和变分自编码器——进行基准测试,使用来自癌症基因组图谱中五种造血癌症亚型的转录组数据,共计2452个样本。数据以60:20:20的比例被分层分成训练集、验证集和测试集,并在验证集上选择特征提取器超参数。每种方法产生100维特征向量,随后使用8个多类分类器进行评估:光梯度增强机、极端梯度增强机、逻辑回归、随机森林、决策树、支持向量机和神经网络。在独立测试集上,基于变压器的自编码器嵌入组合光梯度增强机的f1得分为0.969,准确率为0.986,精密度为0.975,召回率为0.964,特异性为0.996,g均值为0.980,平衡准确率为0.954。出于上下文考虑,我们还包括了一个受监督的表格变压器(FT-Transformer)作为参考;虽然它很强大,但不能直接与我们的无监督特征提取器相比较。为了提高可解释性和临床相关性,我们应用Shapley加性解释来确定20个对亚型歧视最有影响的基因。该分析揭示了与内质网功能、抗原加工和核糖核酸调节相关的关键生物标志物。这些发现表明,基于变压器的无监督特征提取大大提高了预测准确性,并为复杂的血液恶性肿瘤提供了有价值的生物学见解。总的来说,该研究支持了表格生物医学数据的注意驱动表征学习,并激励了基因表达的生成/自我监督表征的未来工作。
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引用次数: 0
IntNet: Lightweight yet high-performance deep learning system for intuitive radar patterns analysis and human fall detection internet:轻量级但高性能的深度学习系统,用于直观的雷达模式分析和人体跌倒检测
IF 6.3 2区 医学 Q1 BIOLOGY Pub Date : 2026-02-15 Epub Date: 2026-01-16 DOI: 10.1016/j.compbiomed.2026.111485
Malek Y. Almallah , Belal H. Sababha
The growing trend of solitary living among the elderly and young, coupled with the high risk of falls leading to injuries and death, highlights the need for fall monitoring systems. Emphasizing individuals' privacy and comfort, these systems should rely on radar sensors instead of visual-based, acoustic-based, or wearable solutions. Current radar-based systems have yet to reach satisfactory real-world performance. This work proposes a radar-based fall detection system that offers superior performance in complex real-world scenarios while maintaining edge computing capabilities and utilizing minimal hardware resources. The proposed deep learning system achieved a recall of 98.99 % and a precision of 99.32 %. These unprecedented performance numbers are measured on the proposed dataset, which is the most real-life representative dataset in the literature. The system has 211.8k parameters and ∼8.84 M Floating Point Operations (FLOPs), achieving an edge computing capability. Moreover, the efficient model construction eliminates redundant computation in real-time operation. Furthermore, this work proposes a novel performance comparison methodology that can be used in all classification problems. This methodology compares performance metrics, which are calculated based on different datasets, with a high level of fairness.
老年人和年轻人独居的趋势日益增加,再加上跌倒导致受伤和死亡的高风险,凸显了对跌倒监测系统的需求。这些系统强调个人隐私和舒适,应该依靠雷达传感器,而不是基于视觉、声学或可穿戴的解决方案。目前基于雷达的系统尚未达到令人满意的实际性能。这项工作提出了一种基于雷达的跌倒检测系统,该系统在复杂的现实场景中提供卓越的性能,同时保持边缘计算能力并利用最少的硬件资源。所提出的深度学习系统达到了98.99%的召回率和99.32%的准确率。这些前所未有的性能数字是在提议的数据集上测量的,这是文献中最具现实代表性的数据集。该系统具有211.8k个参数和~ 8.84 M浮点运算(FLOPs),实现了边缘计算能力。此外,高效的模型构建消除了实时操作中的冗余计算。此外,这项工作提出了一种新的性能比较方法,可用于所有分类问题。这种方法比较了基于不同数据集计算的性能指标,具有高度的公平性。
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引用次数: 0
Gender-based data bias and model fairness evaluation in benchmarked open-access disease prediction datasets 基准开放获取疾病预测数据集中基于性别的数据偏差和模型公平性评估
IF 6.3 2区 医学 Q1 BIOLOGY Pub Date : 2026-02-15 Epub Date: 2026-01-27 DOI: 10.1016/j.compbiomed.2026.111503
Shahadat Uddin , Huan Liang , Haolan Guo
The widespread use of open-access datasets for validating machine learning (ML) models has raised critical concerns about data bias and model fairness, particularly in relation to gender. This study systematically investigates gender-based data bias in disease prediction datasets and evaluates the fairness of ML algorithms trained on them. A total of 74 datasets were selected from Kaggle and the UCI Machine Learning Repository, based on the inclusion of gender as a feature and classification labels. Data bias was quantified using Earth Mover's Distance to measure disparities in class-wise gender distributions, with statistical significance assessed via bootstrapping. Fairness was evaluated across seven ML algorithms (Decision Tree, Random Forest, Logistic Regression, Artificial Neural Networks, Support Vector Machine, K-Nearest Neighbours, and Naïve Bayes) using k-fold cross-validation and statistical tests. Two fairness definitions, Equalised Odds and Treatment Equality, were applied. Results showed that 35 datasets exhibited gender-based data bias, disproportionately affecting females. Heart disease datasets had the highest prevalence of data bias, while the lung cancer and mental health datasets were found to be bias-free. Fairness outcomes varied significantly across algorithms, with Decision Tree showing the fewest issues and Logistic Regression the most. Bias-free datasets consistently produced fewer fairness concerns, with statistically significant differences (p < 0.01) across all algorithm groups. These findings highlight the importance of addressing gender-based data bias and selecting appropriate algorithms to improve fairness in ML applications. The study highlights the importance of addressing gender-based data bias in enhancing model fairness. It contributes to the development of equitable AI systems, thereby supporting data-driven decision-making in healthcare.
广泛使用开放获取数据集来验证机器学习(ML)模型,引发了对数据偏差和模型公平性的严重担忧,特别是在性别方面。本研究系统地调查了疾病预测数据集中基于性别的数据偏差,并评估了在这些数据集上训练的ML算法的公平性。基于性别作为特征和分类标签,从Kaggle和UCI机器学习存储库中总共选择了74个数据集。使用Earth Mover's Distance来量化数据偏差,以衡量班级性别分布的差异,并通过自举评估统计显著性。通过k-fold交叉验证和统计检验,评估了七种机器学习算法(决策树、随机森林、逻辑回归、人工神经网络、支持向量机、k近邻和Naïve贝叶斯)的公平性。采用了两个公平定义,即均等赔率和待遇平等。结果显示,35个数据集存在基于性别的数据偏差,对女性的影响不成比例。心脏病数据集的数据偏倚发生率最高,而肺癌和心理健康数据集则没有偏倚。不同算法的公平性结果差异很大,决策树显示的问题最少,逻辑回归显示的问题最多。无偏差数据集始终产生较少的公平性问题,在所有算法组中具有统计学显著差异(p < 0.01)。这些发现强调了解决基于性别的数据偏见和选择适当算法以提高机器学习应用公平性的重要性。该研究强调了解决基于性别的数据偏见在提高模型公平性方面的重要性。它有助于开发公平的人工智能系统,从而支持医疗保健领域的数据驱动决策。
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引用次数: 0
Influence of CT harmonization in longitudinal radiomics for NSCLC immunotherapy response prediction 纵向放射组学中CT协调对非小细胞肺癌免疫治疗反应预测的影响
IF 6.3 2区 医学 Q1 BIOLOGY Pub Date : 2026-02-15 Epub Date: 2026-01-29 DOI: 10.1016/j.compbiomed.2026.111501
Benito Farina , Gonzalo Vegas-Sánchez-Ferrero , Ana Delia Ramos-Guerra , Carmelo Palacios Miras , Andrés Alcazar Peral , José Carmelo Albillos Merino , Jon Zugazagoitia , Germán R. Peces-Barba , Luis Seijo Maceiras , Luis Paz-Ares , Ignacio Gil-Bazo , Manuel Dómine Gómez , Raul San José Estépar , María J. Ledesma-Carbayo
This study investigates the variability of radiomic features in longitudinal CT scans from a multi-institutional NSCLC cohort and introduces a harmonization pipeline to improve predictive modeling of immunotherapy response. Baseline and follow-up CT scans from NSCLC patients treated with anti-PD-1/PD-L1 agents were analyzed, with two institutions combined for model training and internal testing, and a third institution serving as an external test set. To address variability from imaging parameters—such as scanner manufacturer, slice thickness, and noise—we applied image harmonization followed by feature harmonization using NestedComBat. This approach substantially reduced feature dependence on acquisition confounders (from 78.8% to 12.8%) and improved feature robustness across institutions. We further assessed the temporal consistency of radiomic features across longitudinal scans using the intraclass correlation coefficient (ICC). Image harmonization yielded the largest gains in stability (mean ΔICC = +0.021, p < 0.001), while the combined approach also enhanced longitudinal reliability (ΔICC = +0.014, p < 0.001). Finally, harmonization improved predictive performance for 6-month immunotherapy response, increasing the AUC from 0.695 to 0.768 in the internal test and from 0.692 to 0.802 in the external test. These results demonstrate that combining image- and feature-level harmonization enhances the robustness and temporal consistency of radiomic features, potentially supporting more reliable and generalizable predictive modeling across diverse datasets and clinical settings.
本研究调查了来自多机构非小细胞肺癌队列的纵向CT扫描放射学特征的变异性,并引入了一种协调管道来改进免疫治疗反应的预测建模。对接受抗pd -1/PD-L1药物治疗的非小细胞肺癌患者的基线和随访CT扫描进行分析,两个机构联合进行模型训练和内部测试,第三个机构作为外部测试集。为了解决成像参数(如扫描仪制造商、切片厚度和噪声)的变异性,我们应用了图像协调,然后使用NestedComBat进行特征协调。这种方法大大减少了对获取混杂因素的特征依赖(从78.8%降至12.8%),并提高了跨机构的特征稳健性。我们使用类内相关系数(ICC)进一步评估了纵向扫描中放射学特征的时间一致性。图像协调在稳定性方面获得了最大的收益(平均ΔICC = +0.021, p < 0.001),而组合方法也增强了纵向可靠性(ΔICC = +0.014, p < 0.001)。最后,协调提高了6个月免疫治疗反应的预测性能,将内部测试的AUC从0.695提高到0.768,将外部测试的AUC从0.692提高到0.802。这些结果表明,结合图像和特征级协调增强了放射学特征的鲁棒性和时间一致性,可能支持跨不同数据集和临床环境的更可靠和可推广的预测建模。
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引用次数: 0
Research on breast ultrasound images lesion localization and diagnosis based on knowledge-driven and data-driven methods 基于知识驱动和数据驱动方法的乳腺超声图像病灶定位与诊断研究。
IF 6.3 2区 医学 Q1 BIOLOGY Pub Date : 2026-02-15 Epub Date: 2026-01-20 DOI: 10.1016/j.compbiomed.2026.111465
Jianqiang Li , Lintao Song , Xiaoling Liu , Yiming Liu , Tianbao Ma , Jun Bai , Qing Zhao , Xi Xu
Breast cancer poses the most significant threat to women’s health, yet early detection through screening can markedly reduce mortality. Ultrasound imaging, with its affordability, non-invasiveness, and efficacy in dense breast tissue, has emerged as a crucial tool for early screening. Recent advancements in computer vision have spurred the development of computer-aided diagnostic systems that focus on the automated localization and diagnosis of breast lesions. However, challenges such as speckle noise, blurred boundaries, and low contrast in ultrasound images impede accurate lesion detection. This review examines recent studies on breast ultrasound lesion localization and diagnosis, emphasizing model feature construction. It provides an overview of the task, available datasets, and evaluation metrics, and outlines selection criteria through a comprehensive literature analysis. The review categorizes models into three groups: domain knowledge-driven, data-driven, and hybrid approaches. It also discusses current challenges and future directions, aiming to enhance the accuracy of breast lesion localization and diagnosis.
乳腺癌对妇女健康构成最严重的威胁,但通过筛查及早发现可显著降低死亡率。超声成像以其可负担性、非侵入性和对致密乳腺组织的有效性,已成为早期筛查的重要工具。计算机视觉的最新进展促进了计算机辅助诊断系统的发展,该系统专注于乳房病变的自动定位和诊断。然而,诸如斑点噪声、模糊边界和超声图像对比度低等挑战阻碍了准确的病变检测。本文综述了近年来乳腺超声病灶定位与诊断的研究进展,重点介绍了模型特征的构建。它提供了任务、可用数据集和评估指标的概述,并通过全面的文献分析概述了选择标准。该综述将模型分为三组:领域知识驱动、数据驱动和混合方法。讨论了当前面临的挑战和未来的发展方向,旨在提高乳腺病变定位和诊断的准确性。
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引用次数: 0
Amplitude symbolic analysis: a tool for the evaluation of the autonomic function complementary to traditional symbolic approach 振幅符号分析:一种与传统符号方法互补的评价自主神经功能的工具
IF 6.3 2区 医学 Q1 BIOLOGY Pub Date : 2026-02-15 Epub Date: 2026-01-16 DOI: 10.1016/j.compbiomed.2026.111473
Alberto Porta , Beatrice Cairo , Vlasta Bari , Chiara Arduino , Ilaria Burzo , Beatrice De Maria , Paolo Castiglioni , Luc Quintin , Aparecida Maria Catai , Franca Barbic , Raffaello Furlan
Symbolic analysis (SA) infers cardiac control from spontaneous stationary sequences of heart period (HP) by estimating the probability of symbolic pattern classes. Unfortunately, SA does not assess the fraction of HP variability associated with symbolic pattern families. This study proposes amplitude SA (ASA) accounting for absolute changes between consecutive HPs. ASA leverages uniform 6-bin quantization to symbolize HP, the delay embedding procedure to form length-3 symbolic patterns and a traditional strategy to group symbolic patterns into four classes families according to number and sign of variations between adjacent symbols. ASA computes the fraction of variance associated with symbolic pattern classes. ASA was applied to HP variability derived from: 1) healthy subjects during pharmacological challenges (n = 9; age: 25–46 yrs, 9 males); 2) healthy subjects during graded postural stimuli (n = 19; age: 21–48 yrs, 8 males); 3) Parkinson disease (PD) patients (n = 12; age: 55–79 yrs, 8 males) and matched healthy controls (n = 12; age: 58–72 yrs, 7 males). We computed both global and local ASA markers and we compared them with SA indexes. Over stationary HP series we found that: i) ASA provides a general method to decompose HP variance according to symbolic pattern classes; ii) ASA is useful to describe cardiac control; iii) ASA indexes are complementary to SA markers; iv) ASA emphasizes the link of HP variability markers expressed in absolute units with vagal control; v) global and local ASA approaches provide similar information. SA and ASA should be utilized concomitantly for a deeper characterization of cardiac control from spontaneous HP fluctuations.
符号分析(symbol analysis, SA)通过估计符号模式类的概率,从自发平稳的心期序列(HP)中推断出心脏控制。不幸的是,SA并没有评估与符号模式家族相关的HP变异的比例。本研究提出用振幅SA (ASA)来计算连续hp之间的绝对变化。ASA利用均匀6 bin量化对HP进行符号化,利用延迟嵌入程序形成长度为3的符号模式,利用传统策略根据相邻符号之间的变化数和符号将符号模式分为四类族。ASA计算与符号模式类相关的方差的分数。ASA应用于HP变异性的来源:1)健康受试者在药理学挑战期间(n = 9,年龄:25-46岁,9名男性);2)健康受试者接受分级体位刺激(n = 19,年龄21 ~ 48岁,男性8例);3)帕金森病(PD)患者(n = 12,年龄55-79岁,男性8人)和匹配的健康对照(n = 12,年龄58-72岁,男性7人)。我们计算了全局和局部ASA标记,并将它们与SA指数进行了比较。对于平稳HP序列,我们发现:i) ASA提供了一种按照符号模式类分解HP方差的通用方法;ii) ASA可用于描述心脏控制;iii) ASA指数与SA标记物是互补的;iv) ASA强调以绝对单位表达的HP变异性标记与迷走神经控制的联系;v)全球和本地ASA方法提供类似的信息。SA和ASA应同时使用,以更深入地表征自发HP波动引起的心脏控制。
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引用次数: 0
Peptide-nanoparticle platforms for antisense therapeutics: A coarse-grained modeling approach to brain delivery 用于反义治疗的肽-纳米粒子平台:脑传递的粗粒度建模方法。
IF 6.3 2区 医学 Q1 BIOLOGY Pub Date : 2026-02-15 Epub Date: 2026-01-25 DOI: 10.1016/j.compbiomed.2026.111479
Burcu Yesildag Uner , Alper Demir , Pingkun Zhou , Ekim Z. Taskiran , Tsjerk Wassenaar
Traumatic brain injury (TBI) is a leading cause of long-term neurological deficits, often resulting in complex, unresolved molecular and cellular dysfunctions. Among these, gene–circuit disruptions—particularly those affecting neuroinflammation, oxidative stress, and mitochondrial dynamics—have emerged as critical mediators of post-traumatic neuropathology. In this study, we utilized artificial intelligence (AI)-driven proteomics and RNA sequence integration to map altered signaling pathways following TBI. Computational predictions identified specific gene–circuit nodes susceptible to therapeutic intervention, including redox-sensitive mitochondrial regulators and genes involved in the neuroimmune interface. Importantly, although our analyses are derived from rodent models, the conserved signaling pathways and regulatory circuits identified here provide a translational window with strong relevance to human TBI pathophysiology, thereby bridging preclinical findings with potential therapeutic application. Based on these insights, we designed a suite of responsive nanoparticle formulations optimized in silico for targeted delivery to dysregulated brain regions. These carriers incorporated ligands targeting disrupted circuits and incorporated redox-sensitive release mechanisms. Our platform demonstrates the feasibility of a closed-loop, data-guided strategy that integrates AI-based gene network profiling with rational nanocarrier design. This approach provides a scalable framework for precision neurotherapeutics, particularly for complex disorders such as TBI where conventional monotherapies have proven inadequate.
创伤性脑损伤(TBI)是长期神经功能障碍的主要原因,通常导致复杂的、未解决的分子和细胞功能障碍。其中,基因回路紊乱——尤其是那些影响神经炎症、氧化应激和线粒体动力学的紊乱——已经成为创伤后神经病理学的重要媒介。在这项研究中,我们利用人工智能(AI)驱动的蛋白质组学和RNA序列整合来绘制TBI后改变的信号通路。计算预测确定了易受治疗干预影响的特定基因回路节点,包括氧化还原敏感的线粒体调节因子和参与神经免疫界面的基因。重要的是,尽管我们的分析来自啮齿类动物模型,但这里确定的保守信号通路和调控回路提供了一个与人类TBI病理生理学密切相关的翻译窗口,从而将临床前研究结果与潜在的治疗应用联系起来。基于这些见解,我们设计了一套反应灵敏的纳米颗粒配方,用于定向递送到失调的大脑区域。这些载体结合了靶向破坏电路的配体,并结合了氧化还原敏感释放机制。我们的平台证明了一种闭环、数据引导策略的可行性,该策略将基于人工智能的基因网络分析与合理的纳米载体设计相结合。这种方法为精确的神经治疗提供了一个可扩展的框架,特别是对于复杂的疾病,如创伤性脑损伤,传统的单一疗法已被证明是不够的。
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引用次数: 0
Multi-task non-contact ballistocardiogram-based vital signs monitoring in acupuncture 多任务非接触式心电图在针刺生命体征监测中的应用。
IF 6.3 2区 医学 Q1 BIOLOGY Pub Date : 2026-02-15 Epub Date: 2026-01-17 DOI: 10.1016/j.compbiomed.2026.111461
Truong Tien Vo , Quy Phuong Le , Trong Nhan Nguyen , Jaeyeop Choi , Sudip Mondal , Byeongil Lee , Junghwan Oh
The study introduces an innovative approach for efficient vital signs monitoring in acupuncture by combining multi-channel ballistocardiogram (BCG) signals and multi-task learning, taking advantage of the polyvinylidene fluoride (PVDF) film sensor and deep neural networks. The proposed system utilizes non-contact under-mattress BCG signals and deep learning for heart rate (HR), respiration rate (RR) estimation and lying posture detection. A custom-designed data-logger captures the signal from a BCG sensor located under the patient’s back for data acquisition, and integrates Gated Recurrent Unit (GRU) and Multi-head Self-Attention (MHSA) deep learning mechanisms for efficient HR, RR estimation and posture classification. In experiments with 25 participants, the proposed method achieved 98.7% accuracy for activity recognition and 97.6% for lying posture classification. In HR and RR estimation, the best case of mean absolute error (MAE) for HR achieves 0.77 beats per minute (bpm) in the right lateral posture, while the best value of MAE for RR is 0.43 breaths per minute (brpm) in the seated posture, compared to an FDA-approved device. The results demonstrate the high performance of multi-task learning for vital signs estimation and posture classification with our BCG-based system. This work establishes an innovative and practical pathway for medical assistance tools in non-contact monitoring and management.
本研究提出了一种结合多通道BCG信号和多任务学习,利用聚偏氟乙烯(PVDF)薄膜传感器和深度神经网络的针刺生命体征高效监测创新方法。该系统利用非接触式床垫下BCG信号和深度学习进行心率(HR)、呼吸速率(RR)估计和躺姿检测。定制设计的数据记录仪从患者背部下方的BCG传感器捕获信号进行数据采集,并集成门控循环单元(GRU)和多头自注意(MHSA)深度学习机制,实现有效的HR、RR估计和姿势分类。在25人的实验中,该方法的活动识别准确率为98.7%,躺姿分类准确率为97.6%。在HR和RR估计中,与fda批准的设备相比,右侧卧位HR的最佳平均绝对误差(MAE)达到0.77次/分钟(bpm),而坐姿RR的最佳平均绝对误差(MAE)为0.43次/分钟(brpm)。结果表明,基于bcg的多任务学习系统在生命体征估计和姿势分类方面具有很高的性能。这项工作为医疗援助工具在非接触监测和管理方面开辟了一条创新和实用的途径。
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Computers in biology and medicine
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