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Clinical Application of PARP1 Inhibitors and Challenges in Cancer Therapy. PARP1抑制剂在肿瘤治疗中的临床应用及挑战
IF 3.5 4区 医学 Q3 ONCOLOGY Pub Date : 2026-01-01 DOI: 10.2174/0115680096327635241021115944
Yunlin Luo, Mingcheng Nie, Yuekang Chen, Xinyu Huang, Xuehai Cui, Wan Lin, Liyan Xu, Enmin Li, Yinwei Cheng

Among the Poly(ADP-ribose) Polymerase (PARP) family in mammals, PARP1 is the first identified and well-studied member that plays a critical role in DNA damage repair and has been proven to be an effective target for cancer therapy. Here, we have reviewed not only the role of PARP1 in different DNA damage repair pathways, but also the working mechanisms of several PARP inhibitors (PARPi), inhibiting Poly-ADP-ribosylation (PARylation) processing and PAR chains production to trap PARP1 on impaired DNA and inducing Transcription- replication Conflicts (TRCs) by inhibiting the PARP1 activity. This review has systematically summarized the latest clinical application of six authorized PARPi, including olaparib, rucaparib, niraparib, talazoparib, fuzuloparib and pamiparib, in monotherapy and combination therapies with chemotherapy, radiotherapy, and immunotherapy, in different kinds of cancer. Furthermore, probable challenges in PARPi application and drug resistance mechanisms have also been discussed. Despite these challenges, further development of new PARP1 inhibitors appears promising as a valuable approach to cancer treatment.

在哺乳动物聚(adp -核糖)聚合酶(PARP)家族中,PARP1是第一个被发现并得到充分研究的成员,它在DNA损伤修复中起着关键作用,并已被证明是癌症治疗的有效靶点。在这里,我们不仅回顾了PARP1在不同DNA损伤修复途径中的作用,而且还回顾了几种PARP抑制剂(PARPi)的工作机制,它们抑制poly - adp核糖基化(PARylation)加工和PAR链的产生,从而在受损DNA上捕获PARP1,并通过抑制PARP1活性诱导转录-复制冲突(TRCs)。本文系统总结了奥拉帕尼、鲁卡帕尼、尼拉帕尼、塔拉唑帕尼、福唑帕尼、帕米帕尼等6种获批PARPi在不同类型肿瘤单药及联合化疗、放疗、免疫治疗中的最新临床应用。此外,还讨论了PARPi应用中可能面临的挑战和耐药机制。尽管存在这些挑战,新的PARP1抑制剂的进一步开发似乎有望成为一种有价值的癌症治疗方法。
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引用次数: 0
The Clinical Role of Hypoxia Inducible Factor (HIF) Inhibition in Renal Cancer: A Focus on Belzutifan. 低氧诱导因子(HIF)抑制在肾癌中的临床作用:以贝尔祖替芬为重点。
IF 3.5 4区 医学 Q3 ONCOLOGY Pub Date : 2026-01-01 DOI: 10.2174/0115680096323507241101064127
Daniela Arduini, Chiara Ciccarese, Alessandro Strusi, Viria Beccia, Romina Rose Pedone, Alessandro Scala, Valeria Sardaro, Giampaolo Tortora, Roberto Iacovelli

Systemic therapy for metastatic Renal Cell Carcinoma (mRCC) has dramatically improved in the last years because of the use of immunotherapy with checkpoint inhibitor combinations with or without targeted therapies against the Vascular Endothelial Growth Factor Receptors (VEGFR). As a result, patients with mRCC have prolonged survival time, but they ultimately develop resistance and the disease progresses, which highlights the critical need for novel treatment options. The Hypoxia-inducible Factor (HIF) pathway is central to the pathophysiology of ccRCC and von Hippel-Lindau (VHL) disease. As part of the VHL-HIF-VEGF axis, the HIF-2α inhibition has been identified as a rationale target for mRCC treatment. Indeed, one such agent called belzutifan is already approved for VHL-associated RCC and other VHLassociated neoplasms, and a series of trials have indicated encouraging efficacy and good tolerability in sporadic mRCC as well. The potential inclusion of belzutifan into the mRCC treatment armamentarium either as a single agent or as combination therapy could cover the lack of therapeutic options as well as the need for a new combination in mRCC; therefore, this drug has the potential to be largely used in mRCC. In this review, we have recapitulated the clinical data supporting the use of belzutifan in mRCC as monotherapy and the background for combination with other agents as well as its safety profile.

转移性肾细胞癌(mRCC)的全身治疗在过去几年中有了显著的改善,因为使用免疫疗法结合检查点抑制剂联合或不联合针对血管内皮生长因子受体(VEGFR)的靶向治疗。因此,mRCC患者的生存时间延长,但他们最终会产生耐药性和疾病进展,这突出了对新型治疗方案的迫切需求。缺氧诱导因子(HIF)通路在ccRCC和von Hippel-Lindau (VHL)病的病理生理中起着核心作用。作为VHL-HIF-VEGF轴的一部分,HIF-2α抑制已被确定为mRCC治疗的基本靶点。事实上,一种名为belzutifan的药物已经被批准用于vhl相关的RCC和其他vhl相关的肿瘤,并且一系列试验表明,在散发的mRCC中也有令人鼓舞的疗效和良好的耐受性。将贝祖替芬作为单一药物或联合治疗纳入mRCC治疗方案可能弥补mRCC治疗方案的缺乏以及对新联合治疗的需求;因此,该药物有潜力在mRCC中得到广泛应用。在这篇综述中,我们总结了支持在mRCC中使用贝祖替芬作为单药治疗的临床数据,以及与其他药物联合治疗的背景和安全性。
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引用次数: 0
Using Cyclic Ketones to Synthesize New 3,5,6,7,8,9-Hexahydropyrazolo[ 1,5-a]quinoline Derivatives with Antiproliferative Activities: Morphological Studies. 环酮合成具有抗增殖活性的新型3,5,6,7,8,9-六氢吡唑啉[1,5-a]喹啉衍生物的形态学研究
IF 3.5 4区 医学 Q3 ONCOLOGY Pub Date : 2026-01-01 DOI: 10.2174/0115680096356497250210064209
Rafat M Mohareb, Marwa S Gamaan, Nadia Y Megally Abdo, Ibram R Mikhail
<p><strong>Background: </strong>Quinoline derivatives, often incorporating other heterocyclic structures, have shown a wide range of therapeutic potential, especially in the treatment of cancer. These compounds have demonstrated significant anticancer activity against various cell lines, including HeLa (human cervical cancer) and MDA-MB-435 (melanoma), exhibiting strong inhibitory effects.</p><p><strong>Objective: </strong>In this study, arylhydrazonopyrazole derivatives (3a-c) were employed in a series of multicomponent reactions to synthesize 3,5,6,7,8,9-hexahydropyrazolo[1,5-a]quinoline and pyran derivatives. Pyrazolo[1,5-a]quinoline derivatives, due to their structural properties, are considered valuable scaffolds for the development of novel drugs targeting similar biological pathways, with the potential for improved therapeutic efficacy. This study aimed to demonstrate the use of simple arylhydrazonopyrazole derivatives in multicomponent reactions with cyclic ketones and aromatic aldehydes. The resulting compounds were then assessed for their cytotoxic and antiproliferative activities. Following these reactions, further heterocyclization processes were conducted, incorporating the quinoline moiety into the final structures. These findings underscore the potential of pyrazolo[ 1,5-a]quinoline derivatives as promising candidates for drug discovery, offering new avenues for targeting diseases with related molecular mechanisms.</p><p><strong>Methods: </strong>The key starting compound in this study was 3,5-dimethyl-4-(2-phenylhydrazono)-4Hpyrazole, which has been utilized in numerous heterocyclization reactions. These reactions, involving various reagents, such as cyclic ketones and diketones in the presence of aromatic aldehydes, led to the formation of fused tetracyclic compounds. Arylhydrazonopyrazole derivatives (5a-c) were employed in multicomponent reactions to synthesize 3,5,6,7,8,9-hexahydropyrazolo[1,5- a]quinoline and pyran derivatives. The reactions were carried out using both conventional catalysts and ionic liquid-immobilized catalysts. Notably, the use of ionic liquid-immobilized catalysts resulted in higher yields of the desired compounds.</p><p><strong>Results: </strong>In this study, new compounds were synthesized, characterized, and evaluated for their cytotoxicity against six cancer cell lines: A549, HT-29, MKN-45, U87MG, SMMC-7721, and H460. Additionally, the cytotoxic effects of the synthesized compounds were assessed against hepatocellular carcinoma (HepG2) and cervical carcinoma (HeLa) cell lines. Morphological studies of selected compounds were also conducted to further understand their effects on the cancer cells. Moreover, the cytotoxicity of the selected compounds was tested against seventeen different cancer cell lines, categorized by disease type. Morphological analyses of these selected compounds were also performed to gain deeper insights into their potential as anticancer agents.</p><p><strong>Conclusion: </stron
背景:喹啉衍生物通常包含其他杂环结构,已显示出广泛的治疗潜力,特别是在治疗癌症方面。这些化合物已显示出对多种细胞系的显著抗癌活性,包括HeLa(人宫颈癌)和MDA-MB-435(黑色素瘤),表现出强烈的抑制作用。目的:本研究以芳酰腙吡唑衍生物(3a-c)为原料,通过一系列多组分反应合成3,5,6,7,8,9-六氢吡唑啉[1,5-a]喹啉和吡喃衍生物。Pyrazolo[1,5-a]喹啉衍生物由于其结构特性,被认为是开发针对类似生物途径的新型药物的有价值的支架,具有提高治疗效果的潜力。本研究旨在证明简单芳酰腙吡唑衍生物在与环酮和芳香醛的多组分反应中的应用。然后评估所得化合物的细胞毒性和抗增殖活性。在这些反应之后,进行了进一步的杂环化过程,将喹啉部分纳入最终结构。这些发现强调了吡唑啉[1,5-a]喹啉衍生物作为药物发现的有希望的候选物的潜力,为靶向具有相关分子机制的疾病提供了新的途径。方法:以3,5-二甲基-4-(2-苯基腙)- 4h -吡唑为主要起始化合物,该化合物已被广泛应用于杂环化反应中。这些反应,涉及各种试剂,如环酮和二酮在芳香醛的存在,导致形成融合的四环化合物。以芳酰腙吡唑衍生物(5a-c)为原料,通过多组分反应合成了3,5,6,7,8,9-六氢吡唑[1,5-a]喹啉和吡喃衍生物。采用常规催化剂和离子液体固定化催化剂进行反应。值得注意的是,离子液体固定化催化剂的使用提高了所需化合物的产率。结果:本研究合成了新的化合物,并对其对A549、HT-29、MKN-45、U87MG、SMMC-7721和H460 6种癌细胞的细胞毒性进行了表征和评价。此外,还评估了合成的化合物对肝细胞癌(HepG2)和宫颈癌(HeLa)细胞系的细胞毒性作用。我们还对所选化合物进行了形态学研究,以进一步了解它们对癌细胞的影响。此外,选定的化合物对17种不同的癌细胞系的细胞毒性进行了测试,按疾病类型分类。这些选定的化合物的形态分析也进行了更深入的了解,以获得其潜在的抗癌剂。结论:化合物对c-Met酶活性的抑制作用显著,IC50值在0.25 ~ 10.30 nM范围内。此外,在前列腺PC-3细胞系中观察到有效的抑制作用,IC50值为0.19 ~ 8.62 μM。这些有希望的结果突出了这些化合物的潜力,并鼓励进一步研究以探索它们在未来的治疗应用。
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引用次数: 0
Prospective Clinical and Biochemical Evaluation of Breast Cancer in Patient Cohorts. 乳腺癌患者队列的前瞻性临床和生化评价。
IF 3.5 4区 医学 Q3 ONCOLOGY Pub Date : 2025-11-27 DOI: 10.2174/0115680096369835250610135029
Mohammed Obaid Alharbi, Thamir Mahmoud Eid, Mirza Rafi Baig, Salma Naqvi, Fahad A Al-Abassi, Omar A Al-Bar, Michael Chukwugoziem Nweke, Vikas Kumar, Firoz Anwar

Introduction: Breast cancer is one of the most prevalent malignancies in women globally, characterized by diverse histological and molecular subtypes, each with varying clinical outcomes. Understanding these subtypes and their associated risk factors is critical for accurate diagnosis, prognosis, and treatment planning.

Methodology: The study scrutinized 187 breast cancer (BC) patients from Hail region of Saudi Arabia, focusing on ABO blood group distribution, histological type, cancer subtype, metastases size, age distribution, body mass index (BMI), gestational diabetes mellitus (GDM) status, and biochemical markers, including plasma calcium, magnesium, and HBA1C levels.

Results: Blood group distribution showed O+ (50.27%) as the most common blood type, followed by A+ (14.97%) and B+ (11.2%). Histologically, Invasive Ductal Carcinoma (IDC) accounts for 64.1% (120) cases, while Triple Negative Breast Cancer (TNBC) con-stitutes 17.1% (32) cases. The most common metastatic sites are the lungs (25.1%) and ax-illary lymph nodes (17.6%). HER2-positive breast cancer, seen in 9.1% of cases, can lead to multi-organ metastases in some cases. Age distribution indicated most patients were 46-55 years old (50 cases), while BMI data exhibited the highest frequency in the obese cate-gory (~90 cases), with 12 having GDM and 177 not having GDM. Calcium levels across age groups slightly fell below the typical adult range (2.1-2.6 mmol/L) with an average of around 2.06 mmol/L. Magnesium levels were elevated in patients less than 35 years of age (7.02 mmol/L) and were low in other groups. HbA1C levels in all age groups ranged from 6.44 to 6.67 mg/dL, aligning with prediabetic or diabetic thresholds. Plasma calcium and magnesium levels were elevated in the weight category, showing slight deviations from the normal range. Underweight patients displayed the lowest HbA1C levels with all weight cat-egories exceeding 6.5 mg/dL, indicating diabetes.

Conclusion: The results highlight IDC as a predominant BC type, with O+ as the most common blood group among patients. TNBC remains a treatment challenge due to a lack of hormone receptors. Metastases mainly affect the lungs and lymph nodes. Elevated BMI, calcium, and magnesium levels correlate with increased HbA1C, suggesting a diabetic link. Emphasizing personalized treatment, obesity management, and electrolyte monitoring., the present research advocates a holistic approach for improved BC outcomes and suggests fu-ture exploration of metabolic influences.

乳腺癌是全球女性中最常见的恶性肿瘤之一,其特征是不同的组织学和分子亚型,每种亚型都有不同的临床结果。了解这些亚型及其相关的危险因素对准确诊断、预后和治疗计划至关重要。方法:本研究对来自沙特阿拉伯Hail地区的187例乳腺癌(BC)患者进行了详细分析,重点关注ABO血型分布、组织学类型、癌症亚型、转移灶大小、年龄分布、体重指数(BMI)、妊娠糖尿病(GDM)状态以及血浆钙、镁、HBA1C水平等生化指标。结果:血型分布以O+型(50.27%)最多,其次为A+型(14.97%)和B+型(11.2%)。组织学上,浸润性导管癌(Invasive Ductal Carcinoma, IDC)占64.1%(120例),三阴性乳腺癌(Triple Negative Breast Cancer, TNBC)占17.1%(32例)。最常见的转移部位是肺部(25.1%)和腋窝淋巴结(17.6%)。her2阳性乳腺癌占9.1%,在某些情况下可导致多器官转移。年龄分布显示大多数患者年龄在46-55岁(50例),而BMI数据显示肥胖类别发生率最高(约90例),其中12例患有GDM, 177例未患有GDM。各年龄组的钙水平略低于典型的成人范围(2.1-2.6 mmol/L),平均约为2.06 mmol/L。35岁以下患者镁水平升高(7.02 mmol/L),其他组较低。所有年龄组的HbA1C水平范围为6.44至6.67 mg/dL,与糖尿病前期或糖尿病阈值一致。血浆钙和镁水平在体重类别中升高,与正常范围略有偏差。体重过轻的患者HbA1C水平最低,所有体重类别均超过6.5 mg/dL,表明患有糖尿病。结论:结果显示IDC是主要的BC型,O+型是患者中最常见的血型。由于缺乏激素受体,TNBC仍然是一个治疗挑战。转移主要影响肺和淋巴结。BMI、钙和镁水平升高与HbA1C升高相关,提示与糖尿病有关。强调个性化治疗、肥胖管理和电解质监测。,目前的研究提倡采用整体方法来改善BC结果,并建议未来探索代谢影响。
{"title":"Prospective Clinical and Biochemical Evaluation of Breast Cancer in Patient Cohorts.","authors":"Mohammed Obaid Alharbi, Thamir Mahmoud Eid, Mirza Rafi Baig, Salma Naqvi, Fahad A Al-Abassi, Omar A Al-Bar, Michael Chukwugoziem Nweke, Vikas Kumar, Firoz Anwar","doi":"10.2174/0115680096369835250610135029","DOIUrl":"https://doi.org/10.2174/0115680096369835250610135029","url":null,"abstract":"<p><strong>Introduction: </strong>Breast cancer is one of the most prevalent malignancies in women globally, characterized by diverse histological and molecular subtypes, each with varying clinical outcomes. Understanding these subtypes and their associated risk factors is critical for accurate diagnosis, prognosis, and treatment planning.</p><p><strong>Methodology: </strong>The study scrutinized 187 breast cancer (BC) patients from Hail region of Saudi Arabia, focusing on ABO blood group distribution, histological type, cancer subtype, metastases size, age distribution, body mass index (BMI), gestational diabetes mellitus (GDM) status, and biochemical markers, including plasma calcium, magnesium, and HBA1C levels.</p><p><strong>Results: </strong>Blood group distribution showed O+ (50.27%) as the most common blood type, followed by A+ (14.97%) and B+ (11.2%). Histologically, Invasive Ductal Carcinoma (IDC) accounts for 64.1% (120) cases, while Triple Negative Breast Cancer (TNBC) con-stitutes 17.1% (32) cases. The most common metastatic sites are the lungs (25.1%) and ax-illary lymph nodes (17.6%). HER2-positive breast cancer, seen in 9.1% of cases, can lead to multi-organ metastases in some cases. Age distribution indicated most patients were 46-55 years old (50 cases), while BMI data exhibited the highest frequency in the obese cate-gory (~90 cases), with 12 having GDM and 177 not having GDM. Calcium levels across age groups slightly fell below the typical adult range (2.1-2.6 mmol/L) with an average of around 2.06 mmol/L. Magnesium levels were elevated in patients less than 35 years of age (7.02 mmol/L) and were low in other groups. HbA1C levels in all age groups ranged from 6.44 to 6.67 mg/dL, aligning with prediabetic or diabetic thresholds. Plasma calcium and magnesium levels were elevated in the weight category, showing slight deviations from the normal range. Underweight patients displayed the lowest HbA1C levels with all weight cat-egories exceeding 6.5 mg/dL, indicating diabetes.</p><p><strong>Conclusion: </strong>The results highlight IDC as a predominant BC type, with O+ as the most common blood group among patients. TNBC remains a treatment challenge due to a lack of hormone receptors. Metastases mainly affect the lungs and lymph nodes. Elevated BMI, calcium, and magnesium levels correlate with increased HbA1C, suggesting a diabetic link. Emphasizing personalized treatment, obesity management, and electrolyte monitoring., the present research advocates a holistic approach for improved BC outcomes and suggests fu-ture exploration of metabolic influences.</p>","PeriodicalId":10816,"journal":{"name":"Current cancer drug targets","volume":" ","pages":""},"PeriodicalIF":3.5,"publicationDate":"2025-11-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145653728","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Integrative Deep Learning from H&E Images Reveals Prognostically Distinct Pathology-Based Subtypes in Bladder Cancer. 基于H&E图像的综合深度学习揭示膀胱癌基于病理的预后不同亚型
IF 3.5 4区 医学 Q3 ONCOLOGY Pub Date : 2025-11-20 DOI: 10.2174/0115680096434051251113094536
Huanhui Li, Fazhong Dai, Yongqiang Zhang, Xiaoyang Li, Biling Zhong, Jia Fang, Zhenwei Wang, Yanyan He, Mancun Wang, Xiaofu Qiu, Zongtai Zheng

Background: Molecular subtyping guides bladder cancer (BCa) care but typically requires RNA profiling. This study aimed to develop pathology-based subtypes of BCa using pathology deep learning features derived from routinely obtained hematoxylin and eosin (H&E)-stained whole-slide images (WSIs).

Methods: We developed a pathology-based subtype of BCa based on deep learning features extracted from H&E-stained WSIs. A modified Net50 model was trained to distinguish between tumor and normal regions and extract patch-level deep features. These features were aggregated at the WSI level, followed by weighted gene co-expression network analysis (WGCNA), Cox regression, and unsupervised K-means clustering to define pathology-based subtypes. External validation was performed using WSIs from four independent centers and transcriptomic data from IMvigor210 and GSE32894 cohorts. Interpretability used Grad-CAM on tumor patches.

Results: The Resnet50 model achieved high and consistent performance in distinguishing tumor and normal patches. The analysis identified four BCa subtypes, with distinct clinical outcomes. Clusters 2/3 were predominantly luminal-like (cluster 3 was enriched for FGFR3 and had the lowest TMB), whereas clusters 0/1 exhibited mixed luminal/basal features with higher immune/stromal scores; regulon and pathway profiles diverged (e.g., EGFR/FOXM1/STAT3 in cluster 1 vs. FGFR3/FOXA1/PPARG in cluster 3). Grad-CAM highlighted distinct nuclear morphologies supporting interpretability.

Conclusion: We present a pathology-based subtype of BCa that is portable, prognostically informative, and mechanistically concordant with RNA-defined biology. The approach offers a cost-effective and accessible alternative to traditional molecular profiling methods, with potential applications in personalized treatment and improved patient stratification.

背景:分子分型指导膀胱癌(BCa)的治疗,但通常需要RNA分析。本研究旨在利用常规获得的苏木精和伊红(H&E)染色全片图像(WSIs)的病理深度学习特征来开发基于病理的BCa亚型。方法:基于从h&e染色的wsi中提取的深度学习特征,我们开发了一个基于病理的BCa亚型。训练改进的Net50模型来区分肿瘤和正常区域,并提取斑块级深度特征。将这些特征在WSI水平上进行汇总,然后进行加权基因共表达网络分析(WGCNA)、Cox回归和无监督K-means聚类,以定义基于病理的亚型。使用来自四个独立中心的wsi和来自IMvigor210和GSE32894队列的转录组学数据进行外部验证。使用Grad-CAM对肿瘤贴片的可解释性。结果:Resnet50模型在区分肿瘤斑块和正常斑块方面具有较高的一致性。分析确定了四种BCa亚型,具有不同的临床结果。集群2/3主要是光样(集群3富含FGFR3, TMB最低),而集群0/1表现出混合的光/基底特征,免疫/基质评分较高;调控和通路谱存在差异(例如,集群1中的EGFR/FOXM1/STAT3与集群3中的FGFR3/FOXA1/PPARG)。Grad-CAM强调了支持可解释性的独特核形态。结论:我们提出了一种基于病理的BCa亚型,它是可移植的,具有预后信息,并且与rna定义的生物学机制一致。该方法为传统的分子分析方法提供了一种成本效益高且易于使用的替代方法,在个性化治疗和改善患者分层方面具有潜在的应用前景。
{"title":"Integrative Deep Learning from H&E Images Reveals Prognostically Distinct Pathology-Based Subtypes in Bladder Cancer.","authors":"Huanhui Li, Fazhong Dai, Yongqiang Zhang, Xiaoyang Li, Biling Zhong, Jia Fang, Zhenwei Wang, Yanyan He, Mancun Wang, Xiaofu Qiu, Zongtai Zheng","doi":"10.2174/0115680096434051251113094536","DOIUrl":"https://doi.org/10.2174/0115680096434051251113094536","url":null,"abstract":"<p><strong>Background: </strong>Molecular subtyping guides bladder cancer (BCa) care but typically requires RNA profiling. This study aimed to develop pathology-based subtypes of BCa using pathology deep learning features derived from routinely obtained hematoxylin and eosin (H&E)-stained whole-slide images (WSIs).</p><p><strong>Methods: </strong>We developed a pathology-based subtype of BCa based on deep learning features extracted from H&E-stained WSIs. A modified Net50 model was trained to distinguish between tumor and normal regions and extract patch-level deep features. These features were aggregated at the WSI level, followed by weighted gene co-expression network analysis (WGCNA), Cox regression, and unsupervised K-means clustering to define pathology-based subtypes. External validation was performed using WSIs from four independent centers and transcriptomic data from IMvigor210 and GSE32894 cohorts. Interpretability used Grad-CAM on tumor patches.</p><p><strong>Results: </strong>The Resnet50 model achieved high and consistent performance in distinguishing tumor and normal patches. The analysis identified four BCa subtypes, with distinct clinical outcomes. Clusters 2/3 were predominantly luminal-like (cluster 3 was enriched for FGFR3 and had the lowest TMB), whereas clusters 0/1 exhibited mixed luminal/basal features with higher immune/stromal scores; regulon and pathway profiles diverged (e.g., EGFR/FOXM1/STAT3 in cluster 1 vs. FGFR3/FOXA1/PPARG in cluster 3). Grad-CAM highlighted distinct nuclear morphologies supporting interpretability.</p><p><strong>Conclusion: </strong>We present a pathology-based subtype of BCa that is portable, prognostically informative, and mechanistically concordant with RNA-defined biology. The approach offers a cost-effective and accessible alternative to traditional molecular profiling methods, with potential applications in personalized treatment and improved patient stratification.</p>","PeriodicalId":10816,"journal":{"name":"Current cancer drug targets","volume":" ","pages":""},"PeriodicalIF":3.5,"publicationDate":"2025-11-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145563211","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comprehensive Analysis Identifies Tumor Mutation Burden-associated Genes ASPM and KIF11 as Novel Biomarkers for Adrenocortical Carcinoma. 综合分析发现肿瘤突变负担相关基因ASPM和KIF11是肾上腺皮质癌的新生物标志物。
IF 3.5 4区 医学 Q3 ONCOLOGY Pub Date : 2025-10-31 DOI: 10.2174/0115680096396835251019170810
Jia-Yin Chen, Yu-Ting Xue, Shi-Wei Lin, Qi You, Bin Lin, Jiang-Bo Sun, Qing-Shui Zheng, Yong Wei, Shao-Hao Chen, Xue-Yi Xue, Xiao-Dong Li, Zhi-Bin Ke, Ning Xu

Introduction: Adrenocortical Carcinoma (ACC) is regarded as an aggressive endocrine malignant tumor. The understanding of ACC tumorigenesis is still incomplete. This study aims to identify candidate tumor mutation burden (TMB)-related prognostic genes and explored the potential molecular mechanism of ACC based on comprehensive bioinformatic methods.

Methods: Single-nucleotide variations and transcriptome data were downloaded from the TCGA database. TMB scores were calculated using single-nucleotide variation data, and then, the correlation of TMB with tumor immune microenvironment, clinicopathologic characteristics, and PD-L1 expression level was explored. Differentially Expressed Genes (DEGs), ranging from high and low TMB scores, were identified. Weighted Gene Co-expression Network Analysis (WGCNA), Protein-Protein Interaction (PPI) networks, and Kaplan-Meier survival analysis were used to screen candidate TMB-related prognostic genes. Preliminary experimental verification of ASPM and KIF11 in ACC tumorigenesis was conducted.

Results: Patients with high TMB had worse OS, DSS, PFS, advanced pathological stage, lower PD-L1 expression level, lower stromal score, lower immune score, and higher tumor purity score. Seven ninety-seven DEGs in all between the high and low TMB groups were identified, including 203 downregulated DEGs and 594 upregulated DEGs. Functional enrichment analysis suggested that these DEGs might participate in cell division and cell cycle regulation. Furthermore, WGCNA analysis identified the turquoise module as the most significantly associated module with TMB. After screening with the PPI network and validating using survival analysis, a total of eight candidate TMB-related prognostic genes for ACC patients were finally identified, including ASPM, BIRC5, BUB1, CDC20, CDCA5, CEP55, KIF11, and TPX2. Preliminary experimental verification revealed that ASPM and KIF11 could promote the proliferation of ACC cells and the tumor growth of mice.

Discussion: ASPM and KIF11, identified as key TMB-related prognostic genes, promoted proliferation and inhibited apoptosis of ACC cells. This functional role revealed their significant potential as novel therapeutic targets for ACC.

Conclusion: A total of eight candidate TMB-related prognostic genes (including ASPM, BIRC5, BUB1, CDC20, CDCA5, CEP55, KIF11, and TPX2) for ACC patients were identified. Preliminary experimental verification revealed that ASPM and KIF11 could promote the proliferation of ACC cells and ACC tumor growth in vivo.

简介:肾上腺皮质癌(Adrenocortical Carcinoma, ACC)是一种侵袭性内分泌恶性肿瘤。对ACC肿瘤发生机制的认识尚不完整。本研究旨在基于综合生物信息学方法,筛选候选肿瘤突变负荷(tumor mutation burden, TMB)相关预后基因,探讨ACC的潜在分子机制。方法:从TCGA数据库下载单核苷酸变异和转录组数据。利用单核苷酸变异数据计算TMB评分,进而探讨TMB与肿瘤免疫微环境、临床病理特征、PD-L1表达水平的相关性。差异表达基因(DEGs),从高和低TMB评分,鉴定。加权基因共表达网络分析(WGCNA)、蛋白-蛋白相互作用(PPI)网络和Kaplan-Meier生存分析用于筛选候选tmb相关预后基因。初步实验验证了ASPM和KIF11在ACC肿瘤发生中的作用。结果:TMB高的患者OS、DSS、PFS较差,病理分期较晚,PD-L1表达水平较低,基质评分较低,免疫评分较低,肿瘤纯度评分较高。在高、低TMB组之间共鉴定出797个deg,其中下调deg 203个,上调deg 594个。功能富集分析表明,这些deg可能参与细胞分裂和细胞周期调控。此外,WGCNA分析发现,绿松石模块是与TMB最显著相关的模块。通过PPI网络筛选和生存分析验证,最终确定了8个与ACC患者tmb相关的候选预后基因,包括ASPM、BIRC5、BUB1、CDC20、CDCA5、CEP55、KIF11和TPX2。初步实验验证表明,ASPM和KIF11能促进小鼠ACC细胞的增殖和肿瘤的生长。讨论:ASPM和KIF11被认为是与tmb相关的关键预后基因,它们促进ACC细胞增殖并抑制凋亡。这一功能作用揭示了它们作为ACC新治疗靶点的巨大潜力。结论:共鉴定出8个与ACC患者tmb相关的候选预后基因(包括ASPM、BIRC5、BUB1、CDC20、CDCA5、CEP55、KIF11和TPX2)。初步实验验证表明,ASPM和KIF11在体内可促进ACC细胞的增殖和ACC肿瘤的生长。
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引用次数: 0
Current Advances in Hepatocellular Carcinoma: Transition from Traditional to Advanced Technology. 肝细胞癌的最新进展:从传统技术到先进技术的转变。
IF 3.5 4区 医学 Q3 ONCOLOGY Pub Date : 2025-10-27 DOI: 10.2174/0115680096380583251007074500
Sneha Gautam, Abhishek Sharma

Introduction: The changing landscape of hepatocellular carcinoma detection and treatment is examined in this study, focusing on recent advancements in therapeutic methods across several stages. Early identification of hepatocellular cancer cells continues to pose a serious threat to human health and is of utmost significance. It is crucial to create a useful signature to diagnose hepatocellular carcinoma early.

Methods: Chemotherapy and immunotherapy are high-stage treatment options for hepatocellular cancer. These treatments can be coupled with nanotechnology to increase effectiveness and minimize adverse effects. Furthermore, immunotherapy and chemotherapy might be combined to increase therapeutic efficacy and overcome resistance. Artificial intelligence technologies have the potential to significantly enhance hepatocellular carcinoma diagnosis and management.

Results: Numerous models performed as well as or better than experienced radiologists while indicating the ability to improve radiologists' accuracy, showing encouraging outcomes for applying Artificial Intelligence to hepatocellular carcinoma-related diagnostic tasks.

Discussion: Treatment for hepatocellular carcinoma has changed dramatically, moving from traditional techniques to cutting-edge technologies. Precision in diagnosis, prognosis, and treatment has increased due to innovations like molecular diagnostics, tailored medicines, and nanotechnology. This change improves patient outcomes and presents encouraging avenues for future research and treatment of hepatocellular cancer.

Conclusion: Recent advances in imaging techniques, biomarkers, and personalized medicine approaches have improved diagnostic accuracy and treatment outcomes. The emergence of immunotherapy, targeted therapies, and combination regimens has expanded treatment options, offering new hope for patients with advanced disease.

简介:本研究探讨了肝细胞癌检测和治疗的变化,重点介绍了不同阶段治疗方法的最新进展。肝癌细胞的早期识别继续对人类健康构成严重威胁,具有极其重要的意义。早期诊断肝细胞癌至关重要的是建立一个有用的特征。方法:化疗和免疫治疗是肝细胞癌的高分期治疗选择。这些治疗方法可以与纳米技术相结合,以提高疗效并尽量减少副作用。此外,免疫治疗和化疗可以联合使用,以提高治疗效果,克服耐药性。人工智能技术有可能显著提高肝细胞癌的诊断和管理。结果:许多模型的表现与经验丰富的放射科医生一样好或更好,同时表明有能力提高放射科医生的准确性,显示了将人工智能应用于肝细胞癌相关诊断任务的令人鼓舞的结果。讨论:肝细胞癌的治疗发生了巨大的变化,从传统技术转向尖端技术。由于分子诊断、量身定制的药物和纳米技术等创新,诊断、预后和治疗的准确性得到了提高。这一变化改善了患者的预后,并为未来肝细胞癌的研究和治疗提供了令人鼓舞的途径。结论:成像技术、生物标志物和个性化医疗方法的最新进展提高了诊断准确性和治疗效果。免疫治疗、靶向治疗和联合治疗方案的出现扩大了治疗选择,为晚期疾病患者带来了新的希望。
{"title":"Current Advances in Hepatocellular Carcinoma: Transition from Traditional to Advanced Technology.","authors":"Sneha Gautam, Abhishek Sharma","doi":"10.2174/0115680096380583251007074500","DOIUrl":"https://doi.org/10.2174/0115680096380583251007074500","url":null,"abstract":"<p><strong>Introduction: </strong>The changing landscape of hepatocellular carcinoma detection and treatment is examined in this study, focusing on recent advancements in therapeutic methods across several stages. Early identification of hepatocellular cancer cells continues to pose a serious threat to human health and is of utmost significance. It is crucial to create a useful signature to diagnose hepatocellular carcinoma early.</p><p><strong>Methods: </strong>Chemotherapy and immunotherapy are high-stage treatment options for hepatocellular cancer. These treatments can be coupled with nanotechnology to increase effectiveness and minimize adverse effects. Furthermore, immunotherapy and chemotherapy might be combined to increase therapeutic efficacy and overcome resistance. Artificial intelligence technologies have the potential to significantly enhance hepatocellular carcinoma diagnosis and management.</p><p><strong>Results: </strong>Numerous models performed as well as or better than experienced radiologists while indicating the ability to improve radiologists' accuracy, showing encouraging outcomes for applying Artificial Intelligence to hepatocellular carcinoma-related diagnostic tasks.</p><p><strong>Discussion: </strong>Treatment for hepatocellular carcinoma has changed dramatically, moving from traditional techniques to cutting-edge technologies. Precision in diagnosis, prognosis, and treatment has increased due to innovations like molecular diagnostics, tailored medicines, and nanotechnology. This change improves patient outcomes and presents encouraging avenues for future research and treatment of hepatocellular cancer.</p><p><strong>Conclusion: </strong>Recent advances in imaging techniques, biomarkers, and personalized medicine approaches have improved diagnostic accuracy and treatment outcomes. The emergence of immunotherapy, targeted therapies, and combination regimens has expanded treatment options, offering new hope for patients with advanced disease.</p>","PeriodicalId":10816,"journal":{"name":"Current cancer drug targets","volume":" ","pages":""},"PeriodicalIF":3.5,"publicationDate":"2025-10-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145376214","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Timosaponin AIII Inhibits Migration and Invasion Abilities in Colorectal Cancer Through Inactivation of PI3K-AKT-mTOR Pathway. Timosaponin AIII通过失活PI3K-AKT-mTOR通路抑制结直肠癌的迁移和侵袭能力。
IF 3.5 4区 医学 Q3 ONCOLOGY Pub Date : 2025-10-27 DOI: 10.2174/0115680096383861251003074135
Hao-Ran Xu, Long-Xun Zhu, Jin-Di Liu, Xiang-Fan Chen, Nan Sheng, Qing Fang, Pan-Feng Feng

Introduction: Metastases frequently occur in patients with colorectal cancer, resulting in a higher death rate. The study aimed to evaluate the mechanism by which Ti-mosaponin AIII affects colorectal cancer metastases.

Methods: Different concentrations of Timosaponin AIII were used to treat colorectal cancer cell lines. The CCK8 assay was used to evaluate how Timosaponin AIII affected cell viability. Transwell chamber assays were employed to evaluate the impact of the treatment on the migratory and invasive abilities of colorectal cancer cells. The influence of Timosaponin AIII on apoptosis was detected through flow cytometry, and western blot, PCR, and immunofluorescence staining were utilized to assess its effect on the expression of proteins. The effect of Timosaponin AIII on tumor growth was studied by using xenograft tumor models.

Results: In this study, we observed that, in comparison with the control group, Timosaponin AIII could inhibit the proliferation, migration, and invasive capabilities of colorectal cancer cell lines and promote the process of apoptosis. Timosaponin AIII is capable of enhancing the phosphorylation levels of PI3K, AKT, and mTOR, as well as increasing E - E-cadherin while decreasing N - N-cadherin, Vimentin, Snail, and Slug, thereby inhibiting the epithelial-mesenchymal transition process.

Discussion: The present study has limitations, as the mechanistic investigations were mainly conducted at the cellular level. Future studies should validate the molecular mechanisms through animal models.

Conclusions: Timosaponin AIII restrains the activation of the PI3K-AKT-mTOR signal pathway, thereby regulating the EMT process to suppress metastases of colorectal cancer cell lines. This research provides a critical foundation for the clinical application of Ti-mosaponin AIII in colorectal cancer treatment.

导读:结直肠癌患者经常发生转移,导致较高的死亡率。本研究旨在探讨Ti-mosaponin AIII影响结直肠癌转移的机制。方法:采用不同浓度的Timosaponin AIII对结直肠癌细胞系进行治疗。CCK8法评价Timosaponin AIII对细胞活力的影响。采用Transwell室法评估治疗对结直肠癌细胞迁移和侵袭能力的影响。采用流式细胞术检测Timosaponin AIII对细胞凋亡的影响,采用western blot、PCR、免疫荧光染色检测其对蛋白表达的影响。采用异种移植肿瘤模型,研究了铁骨皂苷AIII对肿瘤生长的影响。结果:在本研究中,我们发现与对照组相比,Timosaponin AIII能够抑制结直肠癌细胞系的增殖、迁移和侵袭能力,并促进其凋亡过程。Timosaponin AIII能够提高PI3K、AKT和mTOR的磷酸化水平,增加E- E-cadherin,降低N- N-cadherin、Vimentin、Snail和Slug,从而抑制上皮-间质转化过程。讨论:目前的研究存在局限性,因为机制研究主要是在细胞水平上进行的。未来的研究应通过动物模型验证其分子机制。结论:Timosaponin AIII抑制PI3K-AKT-mTOR信号通路的激活,从而调控EMT过程,抑制结直肠癌细胞系转移。本研究为Ti-mosaponin AIII在结直肠癌治疗中的临床应用提供了重要的基础。
{"title":"Timosaponin AIII Inhibits Migration and Invasion Abilities in Colorectal Cancer Through Inactivation of PI3K-AKT-mTOR Pathway.","authors":"Hao-Ran Xu, Long-Xun Zhu, Jin-Di Liu, Xiang-Fan Chen, Nan Sheng, Qing Fang, Pan-Feng Feng","doi":"10.2174/0115680096383861251003074135","DOIUrl":"https://doi.org/10.2174/0115680096383861251003074135","url":null,"abstract":"<p><strong>Introduction: </strong>Metastases frequently occur in patients with colorectal cancer, resulting in a higher death rate. The study aimed to evaluate the mechanism by which Ti-mosaponin AIII affects colorectal cancer metastases.</p><p><strong>Methods: </strong>Different concentrations of Timosaponin AIII were used to treat colorectal cancer cell lines. The CCK8 assay was used to evaluate how Timosaponin AIII affected cell viability. Transwell chamber assays were employed to evaluate the impact of the treatment on the migratory and invasive abilities of colorectal cancer cells. The influence of Timosaponin AIII on apoptosis was detected through flow cytometry, and western blot, PCR, and immunofluorescence staining were utilized to assess its effect on the expression of proteins. The effect of Timosaponin AIII on tumor growth was studied by using xenograft tumor models.</p><p><strong>Results: </strong>In this study, we observed that, in comparison with the control group, Timosaponin AIII could inhibit the proliferation, migration, and invasive capabilities of colorectal cancer cell lines and promote the process of apoptosis. Timosaponin AIII is capable of enhancing the phosphorylation levels of PI3K, AKT, and mTOR, as well as increasing E - E-cadherin while decreasing N - N-cadherin, Vimentin, Snail, and Slug, thereby inhibiting the epithelial-mesenchymal transition process.</p><p><strong>Discussion: </strong>The present study has limitations, as the mechanistic investigations were mainly conducted at the cellular level. Future studies should validate the molecular mechanisms through animal models.</p><p><strong>Conclusions: </strong>Timosaponin AIII restrains the activation of the PI3K-AKT-mTOR signal pathway, thereby regulating the EMT process to suppress metastases of colorectal cancer cell lines. This research provides a critical foundation for the clinical application of Ti-mosaponin AIII in colorectal cancer treatment.</p>","PeriodicalId":10816,"journal":{"name":"Current cancer drug targets","volume":" ","pages":""},"PeriodicalIF":3.5,"publicationDate":"2025-10-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145376203","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
YM155 Restores the Effect of Imatinib in Imatinib-Resistant Chronic Myeloid Leukemia Cell Lines. YM155恢复伊马替尼对伊马替尼耐药慢性髓系白血病细胞的作用。
IF 3.5 4区 医学 Q3 ONCOLOGY Pub Date : 2025-10-27 DOI: 10.2174/0115680096402329251002224513
Belal A Al-Husein, Mohammad A Bani-Ahmad, Rand M Nofal, Mohammad A Y Alqudah

Introduction: Chronic myeloid leukemia (CML) is a myeloproliferative neoplasm characterized by the Philadelphia chromosome. Imatinib is considered the standard therapy for CML due to its targeted action against the BCR::ABL1 tyrosine kinase. However, resistance to imatinib often emerges, particularly in the advanced stages of CML. One factor associated with imatinib resistance is the overexpression of survivin (baculoviral IAP repeat-containing 5, BIRC5). YM155 is an innovative survivin inhibitor that suppresses survivin expression and triggers apoptosis. Combination therapy is a strategy used to enhance the effectiveness of cancer treatment and overcome resistance.

Methods: Our study explored the in vitro anticancer effects of YM155 as monotherapy and as a combination therapy with imatinib on imatinib-sensitive (K-562) and imatinib-resistant (K562-r) BCR::ABL1+ CML cell lines.

Results: Survivin inhibition significantly reduced pro-liferation in both K-562 and K562-r cells. Combination therapy with YM155 and imatinib produced a synergistic effect. In K562-r cells (imatinib IC50 = 6 μM), the combination reduced the IC50 by 6.2-fold. In K-562 cells, the IC50 decreased by 16.3-fold. Both monotherapy and combination therapy markedly increased apoptosis, with combination therapy inducing significantly greater apoptosis. The combination also downregulated survivin and BCR::ABL1 tyrosine kinase expression and significantly reduced BCR::ABL1 mRNA levels.

Conclusion: YM155 enhances imatinib's efficacy against both sensitive and resistant CML cells, overcoming resistance through synergistic inhibition of proliferation, increased apoptosis, and suppression of survivin and BCR::ABL1 expression. These results support further investigation of YM155-Imatinib combination therapy as a potential strategy for resistant CML.

慢性髓性白血病(CML)是一种以费城染色体为特征的骨髓增殖性肿瘤。伊马替尼被认为是CML的标准疗法,因为它对BCR::ABL1酪氨酸激酶有靶向作用。然而,对伊马替尼的耐药性经常出现,特别是在CML的晚期。与伊马替尼耐药相关的一个因素是survivin的过度表达(杆状病毒IAP重复序列5,BIRC5)。YM155是一种新型的survivin抑制剂,可抑制survivin的表达并引发细胞凋亡。联合治疗是一种用于提高癌症治疗有效性和克服耐药性的策略。方法:探讨YM155单独或联合伊马替尼对伊马替尼敏感(K-562)和耐药(K562-r) BCR::ABL1+ CML细胞株的体外抗癌作用。结果:Survivin抑制显著降低K-562和K562-r细胞的增殖能力。YM155与伊马替尼联合治疗产生协同效应。在K562-r细胞(伊马替尼IC50 = 6 μM)中,联合用药使IC50降低6.2倍。在K-562细胞中,IC50降低16.3倍。单药治疗和联合治疗均显著增加细胞凋亡,联合治疗诱导细胞凋亡显著增加。联合用药还可下调survivin和BCR::ABL1酪氨酸激酶表达,并显著降低BCR::ABL1 mRNA水平。结论:YM155增强伊马替尼对敏感和耐药CML细胞的疗效,通过协同抑制增殖、增加凋亡、抑制survivin和BCR::ABL1表达来克服耐药。这些结果支持进一步研究ym155 -伊马替尼联合治疗作为耐药CML的潜在策略。
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引用次数: 0
In silico SNP Analysis and 3D Structure Prediction of Human ERG Proto-Oncogene. 人ERG原癌基因的芯片SNP分析及三维结构预测。
IF 3.5 4区 医学 Q3 ONCOLOGY Pub Date : 2025-10-17 DOI: 10.2174/0115680096397391251003112744
Syed Ali Raza Shah, Sumra Wajid Abbasi, Rida Fatima Saeed, Sumaira Sharif, Iffat Nayila

Introduction: Single-nucleotide polymorphisms (SNPs) are the major source of attraction for researchers as they significantly contribute to an individual's susceptibility to various diseases, as well as provide an insight into new diseases associated with a particular gene.

Methods: In this study, the data were retrieved from dbSNP till July 2021. DbSNP showed 103738 total SNPs in the human ERG gene, and out of them, 377 missense SNPs were selected for analysis. Twenty-six missense SNPs were found to be deleterious in all five SNP tools (SIFT, PolyPhen-2, Condel, PHD-SNP, SNPs&GO). These 26 SNPs were further checked for protein stability by iStable, I-Mutant, and MuPro. Collectively, 23 SNPs showed to decrease the protein stability. A comparison of the 3D structures of the wild type (predicted by trRosetta) and the mutated type was visualized using the Chimera tool.

Results: Post-translational modifications identified T180, R302, S356, and Y452 as clinically significant sites, as they were involved in phosphorylation and methylation.

Discussion: In this study, in silico SNP analysis was performed on the human ERG gene. ERG's involvement in various types of diseases, as well as cancer, has made it a source of interest. It is an oncogene that is not only involved in the germ line differentiation of hemo-poietic stem cells, but is also involved in cell proliferation, embryonic development, angiogenesis, inflammation, and apoptosis.

Conclusion: This study has provided detailed information on missense SNPs of the ERG gene. This work can be significant in the detection of genetic diseases and drug discovery, as it has shown involvement of the ERG gene.

单核苷酸多态性(snp)是吸引研究人员的主要来源,因为它们显著地促进了个体对各种疾病的易感性,并提供了与特定基因相关的新疾病的见解。方法:本研究从dbSNP检索到2021年7月的数据。DbSNP在人ERG基因中共显示103738个snp,从中选取377个错义snp进行分析。在所有五种SNP工具(SIFT, polyphen2, Condel, PHD-SNP, SNPs&GO)中发现26个错义SNP是有害的。用iStable、I-Mutant和MuPro进一步检测这26个snp的蛋白稳定性。总共有23个snp显示降低了蛋白质的稳定性。使用Chimera工具对野生型(由trRosetta预测)和突变型的3D结构进行了可视化比较。结果:翻译后修饰鉴定出T180、R302、S356和Y452是具有临床意义的位点,因为它们参与磷酸化和甲基化。讨论:在本研究中,对人类ERG基因进行了硅SNP分析。ERG参与多种疾病,包括癌症,使其成为一个有趣的来源。它是一种致癌基因,不仅参与造血干细胞的种系分化,还参与细胞增殖、胚胎发育、血管生成、炎症和凋亡。结论:本研究提供了ERG基因错义snp的详细信息。这项工作在遗传疾病的检测和药物发现方面具有重要意义,因为它显示了ERG基因的参与。
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引用次数: 0
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