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Targeting the Tumor Epigenetic Regulator SETDB1 for Tumor Therapy 靶向肿瘤表观遗传调节剂 SETDB1 治疗肿瘤
IF 3 4区 医学 Q3 ONCOLOGY Pub Date : 2024-08-28 DOI: 10.2174/0115680096311909240721160523
Cheng Peng, Nini Zhou, Tengjiang Chen, Jie Lei, Changwen Chen, Shunqin Zhu
: Epigenetic alterations are implicated in the early stages of tumorigenesis and are widely recognized as a ubiquitous phenomenon in cancer development. Aberrant epigenetic modifications can alter the expression of target genes, induce heterochromatin formation, and gradually drive normal cells towards immortalized tumor cells with significant consequences. SETDB1 (SET domain bifurcated histone lysine methyltransferase 1), a typical histone me-thyltransferase, promotes the formation of heterochromatin and inhibits the transcription of genes by modifying the methylation of lysine 9 of histone 3. SETDB1 is usually highly ex-pressed in tumors with high copy numbers, accompanied by poor prognosis and low patient survival rates, which is a typical case of abnormal epigenetic modification. We discuss the mechanism of SETDB1 in a variety of cancers and review the epigenetic inhibitors that have been reported in recent years, along with their anti-tumor effects. In addition, we summarize the role of SETDB1 in a variety of diseases and cell functions.
:表观遗传学改变与肿瘤发生的早期阶段有关,被广泛认为是癌症发展过程中无处不在的现象。异常的表观遗传修饰可改变靶基因的表达,诱导异染色质的形成,并使正常细胞逐渐走向永生化肿瘤细胞,从而产生重大影响。SETDB1(SET domain bifurcated histone lysine methyltransferase 1)是一种典型的组蛋白甲-乙基转移酶,通过修饰组蛋白3赖氨酸9的甲基化,促进异染色质的形成并抑制基因的转录。SETDB1通常在肿瘤中高度外显,拷贝数高,预后差,患者生存率低,是表观遗传修饰异常的典型病例。我们讨论了 SETDB1 在多种癌症中的作用机制,并回顾了近年来报道的表观遗传抑制剂及其抗肿瘤效果。此外,我们还总结了 SETDB1 在多种疾病和细胞功能中的作用。
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引用次数: 0
GPX4 Inhibition Enhances the Antitumor Effect of PARP Inhibitor on Homologous Recombination Proficient Ovarian Cancer Cells. 抑制 GPX4 可增强 PARP 抑制剂对具有同源重组能力的卵巢癌细胞的抗肿瘤作用
IF 2.3 4区 医学 Q3 ONCOLOGY Pub Date : 2024-08-26 DOI: 10.2174/0115680096334278240821100404
Jiaxin Gu, Senmi Qian, Fangfang Qian, Xiaodong Wu, Lifeng Chen, Xiaojing Chen, Zhuoye Chen, Feifei Song, Mengxia Zheng, Lingfang Wang, Xiaodong Cheng

Background: Poly (ADP-ribose) polymerase inhibitors (PARPi) are now widely used in BRCA1/2 mutation or homologous recombination (HR) deficiency ovarian cancer but have limited efficacy in HR-proficient patients. GPX4 is a key regulator of ferroptosis and has been proven to be associated with multiple drug sensitivities. As a molecule that regulates the sensitivity of multiple drugs, the relationship between GPX4 and the efficacy of PARPi in HR-proficient ovarian cancer has not been elucidated.

Methods: In this study, siRNA transfection was used to regulate the expression of GPX4. The effect of GPX4 inhibition on HR-proficient ovarian cancer was determined by CCK-8 assay and flow cytometry. Immunofluorescence and comet assays were used to reflect DNA dam-age. ROS production was measured using DCFH-DA and flow cytometry. The combination index of PARP inhibitors and RSL3 was calculated using CompuSyn software based on Chou-Talalay methodology.

Results: GPX4 inhibition confers HR-proficient ovarian cancer cells sensitive to PARPi due to ROS generation and oxidative stress caused by DNA double-strand breakage. The combina-tion of olaparib and niraparib with GPX4 inhibitor RSL3 also showed a synergistic effect.

Conclusion: Combining GPX4 inhibition with PARP inhibitors resulted in a notable increase in DNA damage, ultimately causing the death of cancer cells with proficient HR pathways. Our findings may provide new therapeutic options for HR-proficient patients to benefit from PARP inhibitors and improve outcomes.

背景:聚(ADP-核糖)聚合酶抑制剂(PARPi)目前广泛用于 BRCA1/2 基因突变或同源重组(HR)缺陷的卵巢癌,但对 HR 阳性患者的疗效有限。GPX4 是铁变态反应的关键调节因子,已被证实与多种药物敏感性有关。作为一种调节多种药物敏感性的分子,GPX4与PARPi在HR缺陷卵巢癌中的疗效之间的关系尚未阐明:本研究采用siRNA转染来调控GPX4的表达。方法:本研究采用 siRNA 转染法调控 GPX4 的表达,通过 CCK-8 检测法和流式细胞术确定 GPX4 抑制对 HR 阳性卵巢癌的影响。免疫荧光和彗星试验用于反映 DNA 损伤情况。使用 DCFH-DA 和流式细胞术测量 ROS 的产生。根据 Chou-Talalay 方法,使用 CompuSyn 软件计算 PARP 抑制剂和 RSL3 的组合指数:结果:GPX4抑制可使卵巢癌细胞对PARPi敏感,这是由于ROS生成和DNA双链断裂引起的氧化应激所致。将奥拉帕利(olaparib)和尼拉帕利(niraparib)与 GPX4 抑制剂 RSL3 结合使用也会产生协同效应:结论:将 GPX4 抑制剂与 PARP 抑制剂结合使用,可显著增加 DNA 损伤,最终导致具有熟练 HR 通路的癌细胞死亡。我们的研究结果可能会为HR功能良好的患者提供新的治疗方案,使他们从PARP抑制剂中获益并改善预后。
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引用次数: 0
PLCG2, A Regulator of Lung Adenocarcinoma Proliferation and Migration Associated with Immune Infiltration. PLCG2 是与免疫浸润相关的肺腺癌增殖和迁移的调控因子
IF 2.3 4区 医学 Q3 ONCOLOGY Pub Date : 2024-08-22 DOI: 10.2174/0115680096307100240801095132
Shuhui Chen, Chenkang Zhou, Jieying Dai, Qingqing Xu, Yuxin Chen, Zhaoting Hu, Yumin Wang, Caihong Wang

Background: Results from the TCGA database showed that phosphatidylinositol-specific phospholipase Cγ2 (PLCG2) expression level in Lung Adenocarcinoma (LUAD) was notably decreased compared to adjacent tissues, so we unveiled its role of LUAD.

Objective: This study aims to explore the expression and clinical significance of Phosphatidyl-inositol-specific phospholipase Cγ2 (PLCG2) in lung adenocarcinoma (LUAD) cells and its role in cell proliferation and metastasis.

Methods: Differential PLCG2 mRNA and protein levels between LUAD tissues and adjacent tissues were analyzed from the TCGA database, TIMER, and UALCAN database. Differentially expressed genes were screened for patients in the high and low PLCG2 mRNA expression groups by the R package as well as GSEA. The expression level of PLCG2 in LUAD cells was detected using qRT-PCR and CCK8, clone formation, Transwell, and Western blot assays.

Results: PLCG2 was lowly expressed in LUAD and did not significantly correlate with the prognosis of LUAD. PLCG2 expression levels varied significantly in terms of patients' gender, age, T, N, and pathological stage. GO/KEGG enrichment analysis showed that co-expression of PLCG2 was mainly associated with the immune response- regulating cell-surface receptors, and so on. GSEA analysis showed enrichment pathways of PLCG2-related differential gees were primarily associated with the olfactory transduction pathway, ribosome, etc. R software analysis revealed a significant correlation between PLCG2 expression and six types of immune-infiltrat-ing cells, positively correlated with immune checkpoint-related genes and negatively regulated by tumor mutational load. Overexpressing PLCG2 showed reduced LUAD cell proliferation, clone formation, cell migration and invasion, and epithelial-mesenchymal transition-associated proteins, compared with the control group.

Conclusion: PLCG2 is lowly expressed in LUAD tissues and is involved in immune infiltration of LUAD, inhibiting LUAD cell proliferation and metastasis.

背景:TCGA数据库的研究结果显示,磷脂酰肌醇特异性磷脂酶Cγ2(PLCG2)在肺腺癌(LUAD)中的表达水平较邻近组织明显下降,因此我们揭示了其在LUAD中的作用:本研究旨在探讨磷脂酰肌醇特异性磷脂酶Cγ2(PLCG2)在肺腺癌(LUAD)细胞中的表达及其在细胞增殖和转移中的作用和临床意义:从 TCGA 数据库、TIMER 和 UALCAN 数据库中分析了 LUAD 组织与邻近组织之间 PLCG2 mRNA 和蛋白质水平的差异。利用 R 软件包和 GSEA 筛选 PLCG2 mRNA 高表达组和低表达组患者的差异表达基因。利用qRT-PCR、CCK8、克隆形成、Transwell和Western印迹检测PLCG2在LUAD细胞中的表达水平:结果:PLCG2在LUAD中低表达,与LUAD的预后无明显相关性。PLCG2的表达水平与患者的性别、年龄、T、N和病理分期有显著差异。GO/KEGG富集分析显示,PLCG2的共表达主要与免疫反应-细胞表面受体调节等相关。GSEA分析显示,PLCG2相关差异基因的富集途径主要与嗅觉传导途径、核糖体等有关。R软件分析显示,PLCG2的表达与六种免疫浸润细胞之间存在显著相关性,与免疫检查点相关基因呈正相关,与肿瘤突变负荷呈负调控。与对照组相比,过表达 PLCG2 的 LUAD 细胞增殖、克隆形成、细胞迁移和侵袭以及上皮-间质转化相关蛋白均有所减少:结论:PLCG2在LUAD组织中低表达,参与LUAD的免疫浸润,抑制LUAD细胞的增殖和转移。
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引用次数: 0
Mitochondrial Deoxyguanosine Kinase Induces 5-Fluorouracil Chemotherapy Sensitivity through Autophagy. 线粒体脱氧鸟苷激酶通过自噬诱导 5-氟尿嘧啶化疗敏感性
IF 2.3 4区 医学 Q3 ONCOLOGY Pub Date : 2024-08-20 DOI: 10.2174/0115680096337375240801080008
Lu Dong, Sifan Liu, Wenjing Sun, Siying Liu, Nan Zhang, Shutian Zhang

Aims: The purpose of this study was to investigate the role of DGUOK in the pro-gression of colorectal cancer (CRC) and its impact on the sensitivity of CRC cells to 5-FU treatment.

Methods: We conducted bioinformatics analysis and qRT-PCR to evaluate DGUOK expression in CRC tissues/cells. Cell viability of CRC cells treated with 5-FU was assessed using CCK-8 and colony formation assays. Autophagy levels were determined through immunofluorescence assays and Western blot analysis. Additionally, the influence of p-p38 on autophagy was inves-tigated via Western blotting. A rescue assay was performed to confirm whether DGUOK/p38 affects 5-FU sensitivity in CRC cells through autophagy.

Results: Our findings indicate that DGUOK is upregulated in CRC tissues compared to normal tissues, correlating with increased cell proliferation and migration. Functionally, inhibition of DGUOK enhances autophagy, thereby decreasing the sensitivity of CRC cells to 5-FU. This ef-fect is partly mediated by DGUOK's impact on the mitogen-activated protein kinase (MAPK) pathway, specifically promoting the phosphorylation of p38 MAPK, a crucial regulator in au-tophagy pathways.

Conclusion: These results suggest that DGUOK could serve as a novel marker for predicting the efficacy of 5-FU in CRC treatment.

目的:本研究旨在探讨DGUOK在结直肠癌(CRC)进展过程中的作用及其对CRC细胞对5-FU治疗敏感性的影响:我们通过生物信息学分析和 qRT-PCR 评估了 DGUOK 在 CRC 组织/细胞中的表达。用 CCK-8 和集落形成试验评估了用 5-FU 处理的 CRC 细胞的活力。通过免疫荧光检测和 Western 印迹分析确定自噬水平。此外,还通过 Western 印迹检测了 p-p38 对自噬的影响。为了证实 DGUOK/p38 是否会通过自噬影响 CRC 细胞对 5-FU 的敏感性,还进行了一项拯救试验:我们的研究结果表明,与正常组织相比,DGUOK在CRC组织中上调,这与细胞增殖和迁移增加有关。从功能上讲,抑制 DGUOK 可增强自噬,从而降低 CRC 细胞对 5-FU 的敏感性。这种效应部分是由DGUOK对丝裂原活化蛋白激酶(MAPK)通路的影响介导的,特别是促进了p38 MAPK的磷酸化,而p38 MAPK是自噬通路中的一个关键调节因子:这些结果表明,DGUOK可作为预测5-FU治疗CRC疗效的新标记物。
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引用次数: 0
A Bioinformatic Strategy for Investigating the Mechanism of Hispolon in the Treatment of Triple-Negative Breast Cancer Combined with In vitro Experiments. 结合体外实验研究希斯波隆治疗三阴性乳腺癌机制的生物信息学策略
IF 2.3 4区 医学 Q3 ONCOLOGY Pub Date : 2024-08-06 DOI: 10.2174/0115680096313623240801070716
Junfeng Li, Jingfei Bao, Lichao Wu, Tengfei Sun, Junhui Zhao, Fei Luo, Fangfang Tao, Wenhong Liu

Background: Hispolon, a phenolic compound isolated from the medicinal yellow fungal mulberry, exhibits a strong anti-triple-negative breast cancer (TNBC) effect. However, the antitumor mechanisms of Hispolon have not been fully explored.

Objective: In this study, we systematically investigated the mechanism of Hispolon against TNBC based on bioinformatics and in vitro experiments.

Methods: The Hispolon-related targets were first collected from the SwissTarget database. Differential Expression Genes (DEG) were screened between TNBC and normal breast tissue using the Gene Expression Comprehensive (GEO) dataset. The overlapping targets between Hispolon and DEG were analyzed by plotting Venn maps. Protein-protein interaction (PPI) network was constructed to analyze the interactions among these targets. The focus was on mining the core targets of anti-TNBC effects of Hispolon via the Cytohubba and MCODE plugin of Cytoscape 3.7.2 software. We performed survival analysis on these core targets to screen the best-matched targets, including EGFR, KIT, and PLAU. This correlated strongly with our validation of Hispolon by molecular docking. In addition, Gene Ontology (GO) anal-ysis and KEGG pathway analysis were performed using R software (ClusterProfiler package). Finally, in vitro experiments were performed to assess the accuracy of predicted target genes.

Results: The ADME results suggested that Hispolon has great potential to develop into a drug. Twenty overlapping targets were screened by matching the 107 targets of Hispolon to the 2,013 targets of TNBC DEG. Seven core targets of Hispolon against TNBC were initially identified, including EGFR, IGFBP3, MMP9, MMP2, MMP1, PLAU, and KIT. GO enrich-ment analysis demonstrated that the biological process of Hispolon acting on TNBC mainly involves lymphocyte activation in immune response and phosphatidylinositol-mediated signal-ing. Additionally, the relaxin signaling pathway, estrogen signaling pathway, proteoglycans in cancer, and others might be the key pathways of Hispolon against TNBC. Furthermore, Hispo-lon inhibited the proliferation of MDA-MB-231 cells in a concentration-dependent manner and regulated the RNA and protein expression of the core targets EGFR, PLAU, and KIT for the treatment of TNBC.

Conclusion: In this study, the polygenic pharmacological mechanism of action of Hispolon against TNBC was explored through network pharmacology and in vitro experiments, provid-ing a new insight into the mechanism of TCM monomer against TNBC.

背景:从药用桑黄菌中分离出的酚类化合物Hispolon具有很强的抗三阴性乳腺癌(TNBC)作用。然而,Hispolon的抗肿瘤机制尚未得到充分探索:本研究基于生物信息学和体外实验,系统研究了Hispolon对TNBC的抗肿瘤机制:方法:首先从 SwissTarget 数据库中收集与 Hispolon 相关的靶点。利用基因表达综合(GEO)数据集筛选 TNBC 和正常乳腺组织的差异表达基因(DEG)。通过绘制维恩图分析了Hispolon和DEG之间的重叠靶点。构建了蛋白质-蛋白质相互作用(PPI)网络,以分析这些靶点之间的相互作用。通过Cytoscape 3.7.2软件的Cytohubba和MCODE插件,重点挖掘了Hispolon抗TNBC作用的核心靶点。我们对这些核心靶点进行了生存分析,筛选出最佳匹配靶点,包括表皮生长因子受体、KIT和PLAU。这与我们通过分子对接验证 Hispolon 的结果密切相关。此外,我们还使用 R 软件(ClusterProfiler 软件包)进行了基因本体(GO)分析和 KEGG 通路分析。最后,进行了体外实验以评估预测靶基因的准确性:ADME结果表明,Hispolon具有开发成药物的巨大潜力。通过将Hispolon的107个靶点与TNBC DEG的2,013个靶点进行比对,筛选出20个重叠靶点。初步确定了Hispolon针对TNBC的7个核心靶点,包括表皮生长因子受体(EGFR)、IGFBP3、MMP9、MMP2、MMP1、PLAU和KIT。GO富集分析表明,希波龙作用于TNBC的生物学过程主要涉及免疫反应中的淋巴细胞活化和磷脂酰肌醇介导的信号转导。此外,松弛素信号通路、雌激素信号通路、肿瘤中的蛋白多糖等也可能是海斯波隆作用于TNBC的关键通路。此外,Hispo-lon还能以浓度依赖的方式抑制MDA-MB-231细胞的增殖,并调节核心靶点表皮生长因子受体(EGFR)、PLAU和KIT的RNA和蛋白表达,从而治疗TNBC:本研究通过网络药理学和体外实验,探讨了海斯波隆治疗TNBC的多基因药理作用机制,为中药单体治疗TNBC的机制提供了新的认识。
{"title":"A Bioinformatic Strategy for Investigating the Mechanism of Hispolon in the Treatment of Triple-Negative Breast Cancer Combined with In vitro Experiments.","authors":"Junfeng Li, Jingfei Bao, Lichao Wu, Tengfei Sun, Junhui Zhao, Fei Luo, Fangfang Tao, Wenhong Liu","doi":"10.2174/0115680096313623240801070716","DOIUrl":"https://doi.org/10.2174/0115680096313623240801070716","url":null,"abstract":"<p><strong>Background: </strong>Hispolon, a phenolic compound isolated from the medicinal yellow fungal mulberry, exhibits a strong anti-triple-negative breast cancer (TNBC) effect. However, the antitumor mechanisms of Hispolon have not been fully explored.</p><p><strong>Objective: </strong>In this study, we systematically investigated the mechanism of Hispolon against TNBC based on bioinformatics and in vitro experiments.</p><p><strong>Methods: </strong>The Hispolon-related targets were first collected from the SwissTarget database. Differential Expression Genes (DEG) were screened between TNBC and normal breast tissue using the Gene Expression Comprehensive (GEO) dataset. The overlapping targets between Hispolon and DEG were analyzed by plotting Venn maps. Protein-protein interaction (PPI) network was constructed to analyze the interactions among these targets. The focus was on mining the core targets of anti-TNBC effects of Hispolon via the Cytohubba and MCODE plugin of Cytoscape 3.7.2 software. We performed survival analysis on these core targets to screen the best-matched targets, including EGFR, KIT, and PLAU. This correlated strongly with our validation of Hispolon by molecular docking. In addition, Gene Ontology (GO) anal-ysis and KEGG pathway analysis were performed using R software (ClusterProfiler package). Finally, in vitro experiments were performed to assess the accuracy of predicted target genes.</p><p><strong>Results: </strong>The ADME results suggested that Hispolon has great potential to develop into a drug. Twenty overlapping targets were screened by matching the 107 targets of Hispolon to the 2,013 targets of TNBC DEG. Seven core targets of Hispolon against TNBC were initially identified, including EGFR, IGFBP3, MMP9, MMP2, MMP1, PLAU, and KIT. GO enrich-ment analysis demonstrated that the biological process of Hispolon acting on TNBC mainly involves lymphocyte activation in immune response and phosphatidylinositol-mediated signal-ing. Additionally, the relaxin signaling pathway, estrogen signaling pathway, proteoglycans in cancer, and others might be the key pathways of Hispolon against TNBC. Furthermore, Hispo-lon inhibited the proliferation of MDA-MB-231 cells in a concentration-dependent manner and regulated the RNA and protein expression of the core targets EGFR, PLAU, and KIT for the treatment of TNBC.</p><p><strong>Conclusion: </strong>In this study, the polygenic pharmacological mechanism of action of Hispolon against TNBC was explored through network pharmacology and in vitro experiments, provid-ing a new insight into the mechanism of TCM monomer against TNBC.</p>","PeriodicalId":10816,"journal":{"name":"Current cancer drug targets","volume":null,"pages":null},"PeriodicalIF":2.3,"publicationDate":"2024-08-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141897019","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Exosomal CircRNAs: A Future Star in Colorectal Cancer. 外泌体 CircRNAs:结直肠癌的未来之星
IF 2.3 4区 医学 Q3 ONCOLOGY Pub Date : 2024-08-06 DOI: 10.2174/0115680096323472240710101854
Yuanzhi Zhou, Chengyan Wei, Yuqi Xu, Jingjing Wang, Chunwei Zhang, Yong Jin

Colorectal cancer (CRC) is currently the third most common malignancy world-wide, with an increasing mortality rate and treatment resistance. Due to the lack of effective biomarkers and therapeutic targets, the early diagnosis and treatment of colorectal cancer re-main suboptimal. Circular RNAs (circRNAs) are a novel class of non-coding RNAs with co-valent closed-loop structures that are well stabilized and conserved and are involved in multi-ple pathological conditions in humans. CircRNAs have been identified to be enriched and sta-ble in exosomes. In addition, there is growing proof that exosomal circRNAs that have been identified as oncogenes or tumor suppressors regulate CRC growth, migration, and sensitivity to radiotherapy and chemotherapy. Exosomal circRNAs represent promising candidates as di-agnostic biomarkers and anti-tumor targets. In this article, we explore recent studies on exo-somal circRNAs in CRC and describe their biological functions in colorectal cancer develop-ment, illustrating their potential as biomarkers and targeted therapeutic capabilities.

结直肠癌(CRC)是目前全球第三大常见恶性肿瘤,死亡率和耐药性不断上升。由于缺乏有效的生物标志物和治疗靶点,结直肠癌的早期诊断和治疗仍不理想。环状 RNA(circRNA)是一类新型的非编码 RNA,具有共价闭环结构,具有良好的稳定性和保守性,参与人类多种病理状况。目前已发现外泌体中富含和存在 CircRNAs。此外,越来越多的证据表明,被鉴定为致癌基因或肿瘤抑制因子的外泌体 circRNA 可调控 CRC 的生长、迁移以及对放疗和化疗的敏感性。外泌体 circRNA 可作为双重诊断生物标志物和抗肿瘤靶点。在本文中,我们将探讨最近有关 CRC 外泌体 circRNAs 的研究,并描述它们在结直肠癌发展过程中的生物学功能,说明它们作为生物标志物和靶向治疗能力的潜力。
{"title":"Exosomal CircRNAs: A Future Star in Colorectal Cancer.","authors":"Yuanzhi Zhou, Chengyan Wei, Yuqi Xu, Jingjing Wang, Chunwei Zhang, Yong Jin","doi":"10.2174/0115680096323472240710101854","DOIUrl":"https://doi.org/10.2174/0115680096323472240710101854","url":null,"abstract":"<p><p>Colorectal cancer (CRC) is currently the third most common malignancy world-wide, with an increasing mortality rate and treatment resistance. Due to the lack of effective biomarkers and therapeutic targets, the early diagnosis and treatment of colorectal cancer re-main suboptimal. Circular RNAs (circRNAs) are a novel class of non-coding RNAs with co-valent closed-loop structures that are well stabilized and conserved and are involved in multi-ple pathological conditions in humans. CircRNAs have been identified to be enriched and sta-ble in exosomes. In addition, there is growing proof that exosomal circRNAs that have been identified as oncogenes or tumor suppressors regulate CRC growth, migration, and sensitivity to radiotherapy and chemotherapy. Exosomal circRNAs represent promising candidates as di-agnostic biomarkers and anti-tumor targets. In this article, we explore recent studies on exo-somal circRNAs in CRC and describe their biological functions in colorectal cancer develop-ment, illustrating their potential as biomarkers and targeted therapeutic capabilities.</p>","PeriodicalId":10816,"journal":{"name":"Current cancer drug targets","volume":null,"pages":null},"PeriodicalIF":2.3,"publicationDate":"2024-08-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141897020","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A Comprehensive Review on Novel Pathways in Cancer Treatment: Clinical Applications and Future Prospects. 癌症治疗新途径综合综述:临床应用与未来展望
IF 2.3 4区 医学 Q3 ONCOLOGY Pub Date : 2024-07-25 DOI: 10.2174/0115680096312603240709112520
A S Shifana, Mohammad Adnan, Akash Gupta, Ajazuddin, Parag Jain

Cancer is a global health issue that requires ongoing therapeutic advances. This review provides an overview of recent treatment strategies focusing on novel pathways in cancer therapy. Emerging research has unveiled promising targets that go beyond traditional modalities, offering new avenues for precision medicine and improved patient outcomes. One key area of innovation lies in targeted therapies directed at specific molecular pathways implicated in cancer progression. The identification of novel biomarkers has paved the way for the development of precision medicines tailored to individual patient profiles. Immunotherapy has also revolutionised cancer treatment by using the immune system to identify and remove cancer cells. Moreover, advancements in epigenetic therapies and RNA-based interventions demonstrate unprecedented potential in modulating gene expression and disrupting cancer-specific signalling pathways. We have discussed the pathophysiology of cancer, different immune checkpoint inhibitors, and targeted therapies in signalling therapies. The epigenetic modulators, such as Histone deacetylase (HDACs) inhibitors and DNA methyltransferase (DNMT) inhibitors, were studied. Recent breakthroughs in cancer immunotherapy treatment (CAR-T) cell therapy showcase the potential to enhance the immune response against various cancers; thus, related information was incorporated. Further, RNA-based therapies like RNA interference and mRNA-based vaccines and therapies, combination therapies, and novel therapies were discussed in the present article.

癌症是一个全球性的健康问题,需要不断的治疗进步。本综述概述了近期的治疗策略,重点关注癌症治疗的新途径。新兴研究揭示了有望超越传统模式的靶点,为精准医疗和改善患者预后提供了新途径。创新的一个关键领域是针对与癌症进展有关的特定分子通路的靶向疗法。新型生物标记物的确定为开发针对患者个体特征的精准药物铺平了道路。免疫疗法通过利用免疫系统识别和清除癌细胞,也为癌症治疗带来了革命性的变化。此外,表观遗传疗法和基于 RNA 的干预措施也取得了进展,在调节基因表达和破坏癌症特异性信号通路方面展现出前所未有的潜力。我们讨论了癌症的病理生理学、不同的免疫检查点抑制剂以及信号疗法中的靶向疗法。我们还研究了表观遗传调节剂,如组蛋白去乙酰化酶(HDACs)抑制剂和DNA甲基转移酶(DNMT)抑制剂。最近,癌症免疫疗法(CAR-T)细胞疗法取得了突破性进展,展示了增强针对各种癌症的免疫反应的潜力;因此,相关信息也被纳入其中。此外,本文还讨论了基于 RNA 的疗法,如 RNA 干扰和基于 mRNA 的疫苗和疗法、联合疗法和新型疗法。
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引用次数: 0
Network Pharmacology-Based Virtual Screening of Chemical Constituents from Vitexnegundo Linn's Discovered Novel Molecular Targets for Breast Cancer Treatment. 基于网络药理学的荆芥化学成分虚拟筛选发现治疗乳腺癌的新分子靶点
IF 2.3 4区 医学 Q3 ONCOLOGY Pub Date : 2024-07-23 DOI: 10.2174/0115680096316247240715064729
Rajesh Basnet, Buddha Bahadur Basnet, Obed Boadi Amissah, Rongqi Huang, Yirong Sun, Jean de Dieu Habimana, Zhiyuan Li

Background: The Chinese chaste tree Vitexnegundo (VN) is a popular herb in South and Southeast Asia that has several health benefits, including the ability to inhibit tumor growth and induce apoptosis in multiple tumors. Literature revealed scanty research on breast cancer, with little focus on the molecular mechanism of the disease and an emphasis on targets, biological networks, and active components. Exploring natural compounds as possible therapeutic options is an old but still promising approach for drug discovery and development. This study used a thorough computational and statistical method to screen potential drug candidates.

Methods: The active ingredients and targets of VN were identified using SwissADME, SwissTargetPrediction, STITCH, IMPPAT database, KNapSAcK database, and literature. The OMIM and GeneCards databases were searched for possible targets related to breast cancer. The PASS online server was used to check the probability of active metabolite (Pa) against breast cancer. To build protein-protein interactions (PPI) networking, the intersection of disease and drug targets was uploaded to the STITCH database. Cytoscape software was used to analyze the topology parameters of networking to identify hub targets. Gene Ontology (GO) was analyzed using Metascape and ShinyGO, Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis was performed using the David database and SR plot, and the site of expression and protein domain were studied using FunRich. We employed AutoDockvina, Discovery Studio, and UCSF ChimeraX software and auxiliary tools for molecular docking and analysis. Zincpharmer was used for pharmacophore mapping. ADMET analysis was conducted using ADMETsar, Swiss ADME, ADMETLab servers, and mypresto using GROMACS for molecular dynamics simulation (MDS).

Results: A total of 65 targets and 21 active ingredients were identified. Further investigation was conducted on 20 hub targets selected through PPI networking construction. The enrichment analysis results indicated that the key factors were P, amyloid-beta response, cellular response to amyloid- beta, Pos. reg. of G2/M transition of the mitotic cell cycle, and response to a toxic substance. The molecular docking, pharmacophore mapping, and MD simulation results indicated that apigenin, kaempferol, and luteolin positively interacted with CDK1 and CDK6 proteins.

Conclusion: This study is the first to use network pharmacology, molecular docking, pharmacophore mapping, and MD simulation to identify the active ingredients, molecular targets, and critical biological pathways responsible for VN anti-breast cancer. The study provides a theoretical basis for further research in this area.

背景:中国的女贞子(Vitexnegundo,VN)是南亚和东南亚地区流行的一种草药,具有多种保健功效,包括抑制肿瘤生长和诱导多种肿瘤细胞凋亡的能力。文献显示,对乳腺癌的研究很少,很少关注该疾病的分子机制,而是强调靶点、生物网络和活性成分。探索天然化合物作为可能的治疗方案是一种古老但仍有希望的药物发现和开发方法。本研究采用了一种全面的计算和统计方法来筛选潜在的候选药物:方法:利用 SwissADME、SwissTargetPrediction、STITCH、IMPPAT 数据库、KNapSAcK 数据库和文献,确定了 VN 的活性成分和靶点。在 OMIM 和 GeneCards 数据库中搜索与乳腺癌相关的可能靶点。使用 PASS 在线服务器检查活性代谢物(Pa)对抗乳腺癌的可能性。为了建立蛋白质-蛋白质相互作用(PPI)网络,将疾病和药物靶点的交叉点上传到 STITCH 数据库。使用 Cytoscape 软件分析网络的拓扑参数,以确定中心靶点。使用 Metascape 和 ShinyGO 分析基因本体(GO),使用 David 数据库和 SR plot 进行京都基因组百科全书(KEGG)富集分析,使用 FunRich 研究表达位点和蛋白质域。我们使用 AutoDockvina、Discovery Studio 和 UCSF ChimeraX 软件及辅助工具进行分子对接和分析。Zincpharmer 被用于药效图谱绘制。ADMET分析使用ADMETsar、Swiss ADME、ADMETLab服务器,mypresto使用GROMACS进行分子动力学模拟(MDS):结果:共确定了 65 个目标和 21 种活性成分。结果:共鉴定出 65 个靶点和 21 种活性成分,并对通过 PPI 网络构建筛选出的 20 个中心靶点进行了进一步研究。富集分析结果表明,关键因素包括P、淀粉样蛋白-β反应、细胞对淀粉样蛋白-β的反应、有丝分裂细胞周期G2/M转换的Pos.reg.以及对有毒物质的反应。分子对接、药理图谱和 MD 模拟结果表明,芹菜素、山柰酚和木犀草素与 CDK1 和 CDK6 蛋白具有正向相互作用:本研究首次利用网络药理学、分子对接、药效图谱和 MD 模拟来确定 VN 抗乳腺癌的有效成分、分子靶点和关键生物通路。该研究为该领域的进一步研究提供了理论基础。
{"title":"Network Pharmacology-Based Virtual Screening of Chemical Constituents from Vitexnegundo Linn's Discovered Novel Molecular Targets for Breast Cancer Treatment.","authors":"Rajesh Basnet, Buddha Bahadur Basnet, Obed Boadi Amissah, Rongqi Huang, Yirong Sun, Jean de Dieu Habimana, Zhiyuan Li","doi":"10.2174/0115680096316247240715064729","DOIUrl":"10.2174/0115680096316247240715064729","url":null,"abstract":"<p><strong>Background: </strong>The Chinese chaste tree Vitexnegundo (VN) is a popular herb in South and Southeast Asia that has several health benefits, including the ability to inhibit tumor growth and induce apoptosis in multiple tumors. Literature revealed scanty research on breast cancer, with little focus on the molecular mechanism of the disease and an emphasis on targets, biological networks, and active components. Exploring natural compounds as possible therapeutic options is an old but still promising approach for drug discovery and development. This study used a thorough computational and statistical method to screen potential drug candidates.</p><p><strong>Methods: </strong>The active ingredients and targets of VN were identified using SwissADME, SwissTargetPrediction, STITCH, IMPPAT database, KNapSAcK database, and literature. The OMIM and GeneCards databases were searched for possible targets related to breast cancer. The PASS online server was used to check the probability of active metabolite (Pa) against breast cancer. To build protein-protein interactions (PPI) networking, the intersection of disease and drug targets was uploaded to the STITCH database. Cytoscape software was used to analyze the topology parameters of networking to identify hub targets. Gene Ontology (GO) was analyzed using Metascape and ShinyGO, Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis was performed using the David database and SR plot, and the site of expression and protein domain were studied using FunRich. We employed AutoDockvina, Discovery Studio, and UCSF ChimeraX software and auxiliary tools for molecular docking and analysis. Zincpharmer was used for pharmacophore mapping. ADMET analysis was conducted using ADMETsar, Swiss ADME, ADMETLab servers, and mypresto using GROMACS for molecular dynamics simulation (MDS).</p><p><strong>Results: </strong>A total of 65 targets and 21 active ingredients were identified. Further investigation was conducted on 20 hub targets selected through PPI networking construction. The enrichment analysis results indicated that the key factors were P, amyloid-beta response, cellular response to amyloid- beta, Pos. reg. of G2/M transition of the mitotic cell cycle, and response to a toxic substance. The molecular docking, pharmacophore mapping, and MD simulation results indicated that apigenin, kaempferol, and luteolin positively interacted with CDK1 and CDK6 proteins.</p><p><strong>Conclusion: </strong>This study is the first to use network pharmacology, molecular docking, pharmacophore mapping, and MD simulation to identify the active ingredients, molecular targets, and critical biological pathways responsible for VN anti-breast cancer. The study provides a theoretical basis for further research in this area.</p>","PeriodicalId":10816,"journal":{"name":"Current cancer drug targets","volume":null,"pages":null},"PeriodicalIF":2.3,"publicationDate":"2024-07-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141792174","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
LncRNA DERCNC in Hepatocellular Carcinoma with Cirrhosis Aggravates Tumor Proliferation by Targeting SOX9. 肝硬化肝细胞癌中的 LncRNA DERCNC 通过靶向 SOX9 促进肿瘤增殖
IF 2.3 4区 医学 Q3 ONCOLOGY Pub Date : 2024-07-22 DOI: 10.2174/0115680096310229240626102449
Yun-Bing Wang, Haitham Salameen, Yi-Yu Hu, Shi-Ji Zhou, Jun-Hua Gong

Purpose: This study aims to understand the role of cirrhosis in promoting hepatocellular carcinoma (HCC) progression by analyzing the differential expression of long noncoding RNAs (lncRNAs) between cirrhotic hepatocellular carcinoma (CHCC) and noncirrhotic hepatocellular carcinoma (NCHCC).

Methods: A transcriptional profile array was used to identify differentially expressed lncRNAs. Subsequently, a specific lncRNA was selected to evaluate the clinical significance, potential functions, regulatory targets, and pathways through both in vitro and in vivo experiments.

Results: The study identified a lncRNA, which we termed DERCNC, an acronym for Differentially Expressed RNA between Cirrhotic and Non-Cirrhotic HCC. DERCNC was significantly more highly expressed in CHCC than in NCHCC. Clinically, elevated levels of DERCNC expression were positively correlated with both the cirrhotic state and tumor stage and inversely correlated with tumor differentiation. Furthermore, high expression of DERCNC was associated with a poor prognosis for patients. Conditioned medium from the hepatic stellate cell (LX2) was found to enhance DERCNC expression, SOX9 expression, and tumor proliferation. Overexpression of DERCNC similarly promoted tumor proliferation and increased SOX9 levels. Conversely, DERCNC silencing resulted in the opposite effects. Moreover, the pro-proliferative function of DERCNC was reversible through the modulation of SOX9 expression. Further mechanistic studies revealed that DERCNC upregulated SOX9 by increasing the enrichment of H3K27ac modifications near the SOX9 promoter.

Conclusion: In conclusion, DERCNC expression in CHCC has significant clinical implications and can aggravate tumor proliferation by targeting SOX9. This represents a novel mechanism by which cirrhosis promotes tumor progression.

目的:本研究旨在通过分析肝硬化肝细胞癌(CHCC)和非肝硬化肝细胞癌(NCHCC)之间长非编码RNA(lncRNA)的差异表达,了解肝硬化在促进肝细胞癌(HCC)进展中的作用:方法:利用转录谱阵列鉴定差异表达的lncRNA。方法:使用转录谱阵列识别差异表达的 lncRNA,然后选择特定的 lncRNA,通过体外和体内实验评估其临床意义、潜在功能、调控靶点和通路:研究发现了一种lncRNA,我们称之为DERCNC,它是肝硬化和非肝硬化HCC之间差异表达RNA的缩写。DERCNC在CHCC中的表达明显高于NCHCC。在临床上,DERCNC表达水平的升高与肝硬化状态和肿瘤分期呈正相关,与肿瘤分化呈反相关。此外,DERCNC的高表达与患者的不良预后有关。研究发现,肝星状细胞(LX2)的调节培养基可增强 DERCNC 的表达、SOX9 的表达和肿瘤的增殖。DERCNC的过表达同样促进了肿瘤的增殖并增加了SOX9的水平。相反,DERCNC沉默则会产生相反的效果。此外,DERCNC的促增殖功能可通过调节SOX9的表达而逆转。进一步的机理研究发现,DERCNC通过增加SOX9启动子附近H3K27ac修饰的富集来上调SOX9:总之,DERCNC在CHCC中的表达具有重要的临床意义,它可以通过靶向SOX9来加重肿瘤的增殖。这代表了肝硬化促进肿瘤进展的一种新机制。
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引用次数: 0
The Long Noncoding RNA PANDAR as a Prognostic and Diagnostic Biomarker in Panceratic Cancer ‏‏. 长非编码 RNA PANDAR 作为癌症的预后和诊断生物标志物 .
IF 2.3 4区 医学 Q3 ONCOLOGY Pub Date : 2024-07-15 DOI: 10.2174/0115680096300768240604045809
Shima Mehrabadi, Samaneh Mollazadeh, Amir Avan

Pancreatic cancer (PC) is a lethal complication in the world, affecting around half a million individuals each year. The treatment of PC is relatively difficult due to the difficulty in making an early diagnosis. Most PC patients are confronted with locally metastatic or advanced diseases in the asymptomatic phase, and about 80% have late diagnosis with metastasis. Recently, long noncoding RNAs (lncRNAs) have drawn attention as a novel biological regulation layer. They take part in the regulation of mRNA and can be used as a prognostic factor or drug target. Based on their functions as regulators of PC initiation and progress, the lncRNAs can be categorized as tumor suppressors or oncogenic. They can be considered as a target for finding new biomarkers for prognosis, diagnosis, monitoring, and treating drug response in PC. Therefore, the present study summarizes the lncRNAs role in PC and the probable strategies to deal with their expression and controlling tumorigenesis and detection of the prognosis of PC.

胰腺癌(PC)是世界上一种致命的并发症,每年约有 50 万人罹患此病。由于难以早期诊断,胰腺癌的治疗相对困难。大多数 PC 患者在无症状阶段就已出现局部转移或晚期疾病,约 80% 的患者在晚期诊断时已出现转移。最近,长非编码 RNA(lncRNA)作为一种新型生物调控层引起了人们的关注。它们参与 mRNA 的调控,可作为预后因子或药物靶点。根据其作为 PC 启动和进展调控因子的功能,lncRNA 可分为肿瘤抑制因子和致癌因子。它们可被视为寻找新的生物标志物的目标,以用于 PC 的预后、诊断、监测和治疗药物反应。因此,本研究总结了 lncRNAs 在 PC 中的作用,以及处理其表达、控制肿瘤发生和检测 PC 预后的可能策略。
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引用次数: 0
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Current cancer drug targets
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