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Elucidating the Role of Gardeniae Fructus and Scutellariae Radix Herb Pair in Alzheimer's Disease via Network Pharmacology: Emphasis on Oxidative Stress, and the PI3K/Akt Pathway. 通过网络药理学研究栀子、黄芩对在阿尔茨海默病中的作用:重点研究氧化应激和PI3K/Akt通路
IF 2.2 4区 医学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-06-24 DOI: 10.2174/0113892010326797250422095516
Jia Xi Ye, Jia Ying Wu, Min Zhu, Liang Ai, Qihui Huang

Background: The combination of Gardeniae Fructus (ZZ) and Scutellariae Radix (HQ) is a traditional Chinese medicine used for Alzheimer's disease (AD). However, the molecular mechanisms underlying its anti-dementia effects, particularly its multi-component synergy and pathway modulation, remain poorly understood.

Objective: Our study employed an integrated systems pharmacology approach to mechanistically decode the anti-AD properties of ZZ-HQ, combining network pharmacology predictions, molecular docking simulations, and experimental validation to identify critical bioactive components, molecular targets, and therapeutic pathways.

Methods: A comprehensive network pharmacology analysis was performed to identify bioactive compounds within the ZZ-HQ complex and their potential protein targets associated with AD. Molecular docking was utilized to predict and assess the binding interactions between key bioactive compounds and AD-related protein targets. Experimental validation focused on baicalin, a major active compound in the ZZ-HQ complex, evaluating its effects on cell viability, apoptosis regulation, oxidative stress reduction, and the activation of the PI3K/Akt signaling pathway.

Results: Fifty-four bioactive compounds were identified in the ZZ-HQ complex, interacting with 258 AD-associated proteins. Key compounds, such as baicalein and norwogonin, demonstrated strong binding affinities with pivotal proteins, including SRC and PIK3R1. Experimental studies further confirmed that baicalin significantly improved cell viability by activating the PI3K/Akt pathway, reducing apoptosis, and alleviating oxidative stress.

Conclusion: Our study uncovered the therapeutic potential of the ZZ-HQ combination in addressing AD through multi-target mechanisms, particularly via modulation of the PI3K/Akt pathway and oxidative stress. These findings provide a scientific basis for the pharmacological effects of ZZ-HQ and offer valuable insights for further research on its potential application in AD treatment.

背景:栀子与黄芩联合治疗阿尔茨海默病(AD)的中药。然而,其抗痴呆作用的分子机制,特别是其多组分协同作用和通路调节,仍然知之甚少。目的:本研究采用集成系统药理学方法,结合网络药理学预测、分子对接模拟和实验验证,对ZZ-HQ抗ad特性进行机制解码,以确定关键生物活性成分、分子靶点和治疗途径。方法:通过网络药理学分析,鉴定ZZ-HQ复合物内的生物活性化合物及其与AD相关的潜在蛋白靶点。分子对接用于预测和评估关键生物活性化合物与ad相关蛋白靶点之间的结合相互作用。实验验证的重点是黄芩苷(ZZ-HQ复合物中的主要活性化合物),评估其对细胞活力、细胞凋亡调节、氧化应激降低和PI3K/Akt信号通路激活的影响。结果:在ZZ-HQ复合物中鉴定出54种生物活性化合物,与258种ad相关蛋白相互作用。黄芩素和norwogonin等关键化合物显示出与关键蛋白(包括SRC和PIK3R1)的强结合亲和力。实验研究进一步证实黄芩苷通过激活PI3K/Akt通路,减少细胞凋亡,减轻氧化应激,显著提高细胞活力。结论:我们的研究揭示了ZZ-HQ联合治疗AD的多靶点机制的治疗潜力,特别是通过调节PI3K/Akt通路和氧化应激。这些发现为ZZ-HQ的药理作用提供了科学依据,并为进一步研究ZZ-HQ在AD治疗中的潜在应用提供了有价值的见解。
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引用次数: 0
Challenges and Progress of Orphan Drug Development for Rare Diseases. 罕见病孤儿药开发的挑战与进展。
IF 2.2 4区 医学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-06-23 DOI: 10.2174/0113892010371761250616112614
Abhijit Debnath, Rupa Mazumder, Avijit Mazumder, Pankaj Kumar Tyagi, Rajesh Kumar Singh

Rare diseases, defined as conditions affecting fewer than 200,000 people in the United States or less than 1 in 2,000 people in Europe, pose significant challenges for healthcare systems and pharmaceutical research. This comprehensive review examines the evolving landscape of orphan drug development, analyzing scientific, economic, and regulatory challenges while highlighting recent technological breakthroughs and innovative approaches. We explore how artificial intelligence, next-generation sequencing, and personalized medicine are revolutionizing rare disease research and treatment development. The review details key advances in therapeutic approaches, including gene therapy, cell-based treatments, and drug repurposing strategies, which have led to breakthrough treatments for previously untreatable conditions. We analyze the impact of international collaborations, such as the International Rare Diseases Research Consortium, and discuss how regulatory frameworks worldwide have evolved to accelerate orphan drug development. The paper highlights the growing market for orphan drugs, projected to reach $242 billion by 2024 while examining the complex challenges of ensuring treatment accessibility and economic sustainability. We assess innovative clinical trial designs, patient registry development, and emerging strategies in personalized medicine that are transforming the field. Despite notable advancements, significant gaps remain in diagnosis, treatment accessibility, and sustainable funding for rare disease research. The review concludes by proposing specific actions for enhancing international collaboration, improving patient registries, and aligning incentives to address the unmet medical needs of rare disease patients, emphasizing the critical role of continued public-private partnerships and technological innovation in advancing orphan drug development.

罕见病的定义是,在美国,患病人数少于20万人,在欧洲,患病人数少于1 / 2000。罕见病对医疗保健系统和药物研究构成了重大挑战。这篇综合综述考察了孤儿药开发的发展前景,分析了科学、经济和监管方面的挑战,同时强调了最近的技术突破和创新方法。我们将探讨人工智能、下一代测序和个性化医疗如何彻底改变罕见病的研究和治疗发展。这篇综述详细介绍了治疗方法的关键进展,包括基因治疗、细胞治疗和药物再利用策略,这些都为以前无法治疗的疾病带来了突破性的治疗。我们分析了国际合作的影响,如国际罕见病研究联盟,并讨论了世界范围内的监管框架如何发展以加速孤儿药的开发。该报告强调了孤儿药市场的增长,预计到2024年将达到2420亿美元,同时研究了确保治疗可及性和经济可持续性的复杂挑战。我们评估创新的临床试验设计,患者登记的发展,以及正在改变该领域的个性化医疗的新兴战略。尽管取得了显著进展,但在罕见病研究的诊断、治疗可及性和可持续供资方面仍存在重大差距。报告最后提出了加强国际合作、改进患者登记和协调激励措施以解决罕见病患者未得到满足的医疗需求的具体行动,强调了持续的公私伙伴关系和技术创新在推进孤儿药开发方面的关键作用。
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引用次数: 0
Towards a Personalized Medicine Approach for HCC. 迈向肝癌个体化治疗。
IF 2.2 4区 医学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-06-23 DOI: 10.2174/0113892010366459250616125419
Radhika Tippani, Pallavi Kagithoju, Ranjith Pabbati, Maheswara Reddy Mallu, Mahendar Porika

Owing to the lack of appropriate selective treatments, hepatocellular carcinoma (HCC) remains one of the major reasons of cancer associated death. Chronic liver failure nearly always accompanies HCC, and doctors usually detect it only after the disease has progressed beyond the point where curative therapies are possible. Despite the fact that HCC has distinct morphological and phenotypic patterns, therapeutic options are limited to comparatively homogeneous drugs such as multi-targeted tyrosine kinase blockers and immune checkpoint blockers. Multiple studies evaluating the effectiveness of different medications have yielded disappointing findings, indicating that HCC has poor immunity to chemotherapy, which is exacerbated by multidrug resistance. As a result, more successful therapies addressing HCC's disordered metabolic and molecular pathways are needed. The quite often change in sequence of genes and molecular targets in HCC patients are telomerase reverse transcriptase, Wnt/-catenin signaling pathway oncogene (CTNNB1), and the TP53 gene, according to integrated genomic profiling. Furthermore, new approaches like genome-scale metabolic replicas may be utilized to explicate the basic cancer specific metabolism, allowing for such exploration of promising biomarkers and drug candidates. The clinical implications of metabolic network driven heterogeneity of HCCcaseson the basis of redox response, metabolite use, and subtype specific pathways could help accelerate the advancement of personalised medicine. Another interesting strategy is microRNA- based therapy which involves miRNA antagonists to block oncogenic miRNAs and miRNA substitution, which entails reintroducing a tumor-suppressor miRNA to restore function following a functional impairment. The existing and evolving clinical purpose in context of molecular targets and metabolic network-based approaches are summarised in this review, paving the way for successful HCC patient care.

由于缺乏适当的选择性治疗,肝细胞癌(HCC)仍然是癌症相关死亡的主要原因之一。慢性肝功能衰竭几乎总是伴随着HCC,医生通常只有在疾病发展到无法治愈的程度后才会发现它。尽管HCC具有不同的形态和表型模式,但治疗选择仅限于相对同质的药物,如多靶点酪氨酸激酶阻滞剂和免疫检查点阻滞剂。评估不同药物有效性的多项研究得出了令人失望的结果,表明HCC对化疗的免疫力较差,并因多药耐药而加剧。因此,需要更成功的治疗方法来解决HCC的紊乱代谢和分子途径。综合基因组图谱显示,HCC患者中经常发生的基因序列变化和分子靶点是端粒酶逆转录酶、Wnt/-catenin信号通路癌基因(CTNNB1)和TP53基因。此外,基因组尺度的代谢复制等新方法可以用来解释基本的癌症特异性代谢,从而探索有前途的生物标志物和候选药物。在氧化还原反应、代谢物使用和亚型特异性途径的基础上,代谢网络驱动hcccas2异质性的临床意义有助于加速个体化医疗的发展。另一个有趣的策略是基于microRNA的治疗,包括miRNA拮抗剂阻断致癌miRNA和miRNA替代,这需要重新引入肿瘤抑制miRNA来恢复功能损伤后的功能。本综述总结了分子靶点和基于代谢网络的方法的现有和不断发展的临床目的,为成功治疗HCC患者铺平了道路。
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引用次数: 0
A Multidisciplinary Approach for Developing a Natural Antifungal Formulation Targeting Oropharyngeal Candidiasis: A Mini-review. 开发针对口咽念珠菌病的天然抗真菌制剂的多学科方法:一个小型综述。
IF 2.2 4区 医学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-06-23 DOI: 10.2174/0113892010374288250612065712
Alaa T Rajkhan, Odai I Medhesh, Duaa Bafail, Osama Abdelhakim Ahmed, Abdelbagi Alfadil Musa, Ahmed Shaker Ali, Ibrahim M Ibrahim

Background: Oropharyngeal candidiasis (OPC), a fungal infection affecting the mouth and throat, imposes a substantial burden on vulnerable populations such as HIV/AIDS patients, cancer treatment recipients, and the elderly. Conventional antifungal medications are encountering increasing resistance and side effects, necessitating the exploration of novel therapeutic approaches.

Objectives: This review proposes a comprehensive strategy for developing a novel natural product- based antifungal formulation targeting OPC. The approach involves harnessing promising natural compounds with established antifungal properties and employing advanced delivery systems like mucoadhesive microemulsions to improve efficacy and minimize adverse effects. Additionally, the review explores the integration of computational methods to expedite the identification and development of potent antifungal agents.

Methods: A comprehensive literature review was conducted using databases such as PubMed, Scopus, and Web of Science. Search terms included combinations of "oropharyngeal candidiasis," "natural antifungal agents," "flavonoids," "mucoadhesive microemulsions," "computational drug discovery," and "in vitro/in vivo studies." Priority was given to studies published within the last ten years.

Results: The review identifies promising natural compounds with antifungal activity against Candida species commonly associated with OPC. Additionally, several studies highlight the potential of computational tools such as molecular docking and in silico ADMET for rapidly identifying natural compounds with potent antifungal activity and favorable pharmacokinetic and safety profiles. A brief overview of in vitro and in vivo experiments is provided, emphasizing their role in validating the safety and efficacy of the proposed natural product-based antifungal formulation. Formulation and analytical aspects are also discussed.

Conclusion: The multidisciplinary approach outlined, incorporating natural products, computational methods, advanced preclinical in vitro and in vivo experiments, and advanced delivery systems, offers promise for the rapid, cost-effective development of safe and effective optimized formulations to address the growing challenge of OPC, particularly in vulnerable populations.

背景:口咽念珠菌病(OPC)是一种影响口腔和咽喉的真菌感染,对艾滋病毒/艾滋病患者、癌症治疗接受者和老年人等易感人群造成了沉重的负担。传统的抗真菌药物遇到越来越多的耐药性和副作用,有必要探索新的治疗方法。目的:本文综述了一种针对OPC的基于天然产物的新型抗真菌制剂的开发策略。该方法包括利用具有已建立的抗真菌特性的有前途的天然化合物,并采用像黏附微乳液这样的先进递送系统来提高疗效并最大限度地减少不良反应。此外,回顾探讨了计算方法的集成,以加快识别和开发有效的抗真菌药物。方法:利用PubMed、Scopus、Web of Science等数据库进行文献综述。搜索词包括“口咽念珠菌病”、“天然抗真菌剂”、“类黄酮”、“黏附微乳剂”、“计算药物发现”和“体外/体内研究”的组合。优先考虑最近十年发表的研究。结果:本综述确定了具有抗真菌活性的天然化合物,这些化合物具有抗与OPC相关的念珠菌的活性。此外,一些研究强调了计算工具(如分子对接和硅ADMET)在快速识别具有有效抗真菌活性和良好药代动力学和安全性的天然化合物方面的潜力。简要概述了体外和体内实验,强调了它们在验证拟议的天然产品为基础的抗真菌制剂的安全性和有效性方面的作用。还讨论了公式和分析方面的问题。结论:综合天然产物、计算方法、先进的临床前体外和体内实验以及先进的给药系统,概述了多学科方法,为快速、经济高效地开发安全有效的优化配方提供了希望,以应对OPC日益增长的挑战,特别是在弱势群体中。
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引用次数: 0
Design and Preliminary In vitro Investigation on Core Shell Nanoparticles Laden In Situ Gel for Corneal Neovascularization. 载核壳纳米颗粒原位凝胶用于角膜新生血管的设计及初步体外研究。
IF 2.2 4区 医学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-05-23 DOI: 10.2174/0113892010336099241220165806
Harita Desai, Pranav Shah, Vikas Sawant, Rashmi Singh

Background: The inherent limitation of ocular dosage forms is decreased precorneal residence time which affects the bioavailability and therapeutic efficacy.

Objective: The objective of the current research was to sustain drug release and enhance precorneal drug residence time by formulating lipidic core-shell nanoparticles of Dexamethasone Sodium Phosphate and loading them in ion-sensitive in situ gel for corneal neovascularization.

Methods: Polymeric nanoparticles were formulated using Eudragit L100-55 and PVA by twostep solvent diffusión nanoprecipitation method and coated by a lipidic film of Soya phosphatidylcholine with Cholesterol. The optimized lipidic core-shell nanoparticles were transformed into in situ gel using Gellan gum. The lipidic core-shell nanoparticles were evaluated for particle size, zeta potential, entrapment efficiency, in vitro reléase and in situ gel was evaluated for in vitro gelling time, pH, drug content, HETCAM studies, etc Results: The Core-shell lipid nanoparticles exhibited a particle size of 368.00±0.54 nm and zeta potential -13.3±2.0 mV respectively. The lipidic core-shell nanoparticles were found to show a sustained drug release when compared to the drug solution. The optimized in situ gel was found to show a gelation time of 39.59±2.49 seconds and was found to be non-irritant.

Conclusion: A decline in ex vivo drug permeation was observed through an aqueous suspension of core-shell polymeric nanoparticles and core-shell LPN loaded in situ gel thus confirming sustained release for the drug Dexamethasone Sodium Phosphate.

背景:眼用剂型的固有限制是角膜前停留时间减少,影响生物利用度和治疗效果。目的:通过制备地塞米松磷酸钠脂质核壳纳米颗粒,并将其装载于离子敏感原位凝胶中,以促进角膜新生血管的形成,以维持药物释放并延长角膜前药物停留时间。方法:采用两步溶剂diffusión纳米沉淀法,以乌桕脂L100-55和聚乙烯醇为原料制备聚合纳米颗粒,并以大豆磷脂酰胆碱为脂质膜包被胆固醇。利用结冷胶将优化后的脂质核壳纳米颗粒转化为原位凝胶。对所制得的脂质核壳纳米颗粒进行粒径、zeta电位、包封效率、体外再生酶和原位凝胶凝胶化时间、pH、药物含量、HETCAM研究等评价。结果:所制得的核壳类脂质纳米颗粒粒径为368.00±0.54 nm, zeta电位为-13.3±2.0 mV。与药物溶液相比,脂质核壳纳米颗粒显示出持续的药物释放。优化后的原位凝胶胶凝时间为39.59±2.49秒,无刺激性。结论:通过核-壳聚合物纳米颗粒和核-壳LPN负载原位凝胶的水悬浮液,观察到体外药物渗透下降,从而证实了药物地塞米松磷酸钠的缓释。
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引用次数: 0
A Novel Weight Loss Mechanism of Hydroxysafflor Yellow A in Obese Mice: Involvement of Immune Inflammation via Prkcd, Btk, and Vav1 Genes in Adipose Tissue. 肥胖小鼠羟基红花黄A的新减肥机制:通过脂肪组织中的Prkcd、Btk和Vav1基因参与免疫炎症
IF 2.2 4区 医学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-05-22 DOI: 10.2174/0113892010375949250519062337
Ruizhen Hou, Wenjing Hu, Kemin Yan, Xiaorui Lyu, Yuchen Jiang, Xiaonan Guo, Yuxing Zhao, Linjie Wang, Hongbo Yang, Huijuan Zhu, Hui Pan, Fengying Gong

Introduction: Hydroxysafflor Yellow A (HSYA), known for its anti-inflammatory effects in cardiovascular diseases, has also been shown to reduce adiposity and improve metabolic disorders in diet-induced obese (DIO) mice. However, the molecular mechanisms underlying its anti-obesity effects, particularly whether they are mediated through immune-inflammatory pathways, remain unclear. This study aims to identify the key molecular mechanisms involved in HSYA's anti-obesity action.

Methods: Male C57BL/6J mice were divided into three groups: Standard Feed (SF), High-Fat Diet (HFD), and HFD with HSYA treatment (250 mg/kg/day for 9 weeks). Whole transcriptome sequencing of White Adipose Tissue (WAT) identified Differentially Expressed Genes (DEGs), which were integrated with network pharmacology predictions to identify key molecular targets of HSYA. RT-qPCR in WAT, 3T3-L1 adipocytes, and RAW264.7 macrophages validated the core genes, and molecular docking assessed HSYA's binding affinity with these targets.

Results: HSYA treatment significantly reduced body weight (35.27 ± 1.27g vs. 45.46 ± 1.68g, p < 0.05) and WAT mass (3.38±0.21g vs. 1.86±0.27g, p < 0.05) in DIO mice and ameliorated glucose and lipid metabolism abnormalities. Transcriptome analysis revealed 739 DEGs, with 21 overlapping genes identified between sequencing and network pharmacology analyses. Experimental validation highlighted Prkcd, Btk, and Vav1 as core genes within immune-inflammatory pathways, including chemokine and B cell receptor signaling, which are implicated in obesityrelated inflammation. RT-qPCR confirmed the downregulation of Prkcd, Btk, and Vav1 after HSYA treatment, consistent with transcriptomic findings. Molecular docking analysis demonstrated strong binding affinities between HSYA and VAV1 (-8.5 kcal/mol), BTK (-6.9 kcal/mol), and PRKCD (-6.6 kcal/mol).

Conclusion: HSYA demonstrates the therapeutic potential for obesity by modulating immuneinflammatory pathways in WAT, specifically targeting Prkcd, Btk, and Vav1 in mice. Given its clinical use in cardiovascular disease, these findings suggest that HSYA may offer broader therapeutic benefits, including obesity management, though further studies are needed to clarify the mechanisms and assess its applicability to humans.

简介:羟基afflor Yellow A (HSYA)因其对心血管疾病的抗炎作用而闻名,也被证明可以减少肥胖并改善饮食性肥胖(DIO)小鼠的代谢紊乱。然而,其抗肥胖作用的分子机制,特别是它们是否通过免疫炎症途径介导,仍不清楚。本研究旨在确定HSYA抗肥胖作用的关键分子机制。方法:雄性C57BL/6J小鼠分为标准饲料组(SF)、高脂饲料组(HFD)和高脂饲料加HSYA组(250 mg/kg/d,连续9周)。白色脂肪组织(WAT)的全转录组测序鉴定了差异表达基因(DEGs),并将其与网络药理学预测相结合,以确定HSYA的关键分子靶点。RT-qPCR在WAT、3T3-L1脂肪细胞和RAW264.7巨噬细胞中验证了核心基因,分子对接评估了HSYA与这些靶点的结合亲和力。结果:HSYA治疗显著降低DIO小鼠体重(35.27±1.27g比45.46±1.68g, p < 0.05)和WAT质量(3.38±0.21g比1.86±0.27g, p < 0.05),改善糖脂代谢异常。转录组分析显示739个DEGs,在测序和网络药理学分析中鉴定出21个重叠基因。实验验证强调了Prkcd、Btk和Vav1是免疫炎症途径中的核心基因,包括趋化因子和B细胞受体信号,它们与肥胖相关的炎症有关。RT-qPCR证实HSYA处理后Prkcd、Btk和Vav1下调,与转录组学研究结果一致。分子对接分析表明,HSYA与VAV1 (-8.5 kcal/mol)、BTK (-6.9 kcal/mol)和PRKCD (-6.6 kcal/mol)具有较强的结合亲和力。结论:HSYA通过调节WAT中的免疫炎症通路,特别是针对小鼠Prkcd, Btk和Vav1,显示出治疗肥胖的潜力。鉴于其在心血管疾病中的临床应用,这些发现表明HSYA可能提供更广泛的治疗益处,包括肥胖管理,尽管需要进一步的研究来阐明其机制并评估其对人类的适用性。
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引用次数: 0
Causal Relationships Between Specific Gut Microbiota Taxa, Plasma Metabolites, and Cerebral Small Vessel Disease Risk: A Mendelian Randomization Analysis. 特定肠道微生物群、血浆代谢物和脑血管疾病风险之间的因果关系:孟德尔随机分析
IF 2.2 4区 医学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-05-20 DOI: 10.2174/0113892010373952250510105002
Xuejiao Zhao, Yujie Li, Ting Lu, Huan Yan, Chao Xue, Juan Li

Aims: This study investigates causal relationships between gut microbiota (GM), plasma metabolites, and cerebral small vessel disease (CSVD), with a focus on identifying GM taxa and metabolites that mediate disease risk.

Methods: Summary data from genome-wide association studies on GM (MiBioGen), 1,400 plasma metabolites, and CSVD were analyzed using a two-step Mendelian randomization (MR) approach. The primary analysis utilized inverse-variance weighting, complemented by weighted median, weighted mode, and MR-Egger methods for robustness.

Results: The MR analysis identified 12 GM taxa associated with CSVD risk, including 7 taxa linked to increased risk (Veillonellaceae, Hungatella, Ruminococcus2, Lachnospiraceae UCG010, Streptococcus, Cyanobacteria, Verrucomicrobia) and 5 taxa linked to decreased risk (Faecalibacterium, Alphaproteobacteria, Eubacterium nodatum group, Fusicatenibacter, Rhodospirillales). Additionally, 10 plasma metabolites were causally associated with CSVD risk, with sphingomyelin (d18:2/14:0, d18:1/14:1), nicotinamide, and 3-ethylcatechol sulfate (2) linked to increased risk, while phosphate-to-uridine ratio, adenosine 5'-diphosphate (ADP)-toflavin adenine dinucleotide (FAD) ratio, arginine, caffeine-to-theobromine ratio, N-succinylphenylalanine, sphingosine, and phenylpyruvate-to-4-hydroxyphenylpyruvate ratio were linked to decreased risk. Mediation analysis identified 8 causal pathways through which plasma metabolites connect GM taxa to CSVD.

Conclusion: These findings underscore the substantial influence of GM and plasma metabolites on CSVD risk, highlighting potential therapeutic targets. Further investigation is needed to elucidate the biological mechanisms underlying these associations.

目的:本研究探讨肠道微生物群(GM)、血浆代谢物和脑血管疾病(CSVD)之间的因果关系,重点确定介导疾病风险的GM分类群和代谢物。方法:采用两步孟德尔随机化(MR)方法分析GM (MiBioGen)、1400种血浆代谢物和CSVD全基因组关联研究的汇总数据。主要分析采用反方差加权,并辅以加权中位数、加权模式和MR-Egger方法进行稳健性分析。结果:MR分析确定了12个与CSVD风险相关的转基因分类群,包括7个与风险相关的分类群(Veillonellaceae, Hungatella, Ruminococcus2, Lachnospiraceae UCG010, Streptococcus, Cyanobacteria, Verrucomicrobia)和5个与风险相关的分类群(Faecalibacterium, Alphaproteobacteria, Eubacterium nodatum group, Fusicatenibacter, Rhodospirillales)。此外,10种血浆代谢物与CSVD风险有因果关系,鞘磷脂(d18:2/14:0, d18:1/14:1)、烟酰胺和3-乙基儿茶酚硫酸盐(2)与风险增加有关,而磷酸盐-尿苷比、腺苷5'-二磷酸(ADP)-黄嘌呤二核苷酸(FAD)比、精氨酸、咖啡因-可可碱比、n -琥珀基苯丙氨酸、鞘氨酸和苯基丙酮酸-4-羟基苯基丙酮酸比与风险降低有关。调解分析确定了血浆代谢物将转基因分类群与CSVD联系起来的8条因果途径。结论:这些发现强调了转基因和血浆代谢物对心血管疾病风险的实质性影响,强调了潜在的治疗靶点。需要进一步的研究来阐明这些关联背后的生物学机制。
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引用次数: 0
Analysis of the Mechanism of PGLP-1 Inhibiting Gluconeogenesis Based on Whole Transcriptome Sequencing. 基于全转录组测序的PGLP-1抑制糖异生机制分析
IF 2.2 4区 医学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-05-16 DOI: 10.2174/0113892010382822250516034835
Huashan Gao, Hao Yu, Weishuang Tong, Weiwei Fan, Yanqun Mai, Wenpo Feng, Yuanhao Qiu

Objective: Through comprehensive transcriptome sequencing of liver RNA in mice induced with streptozotocin (STZ) to develop hyperglycemia, we uncovered crucial genes associated with hyperglycemic processes, shedding light on their respective functions. Furthermore, we delved deeply into a discussion surrounding the mechanism behind plasma glucagon-like peptide 1 (PGLP-1) and its role in inhibiting gluconeogenesis.

Methods: Liver tissues from mice induced with STZ to develop hyperglycemia (M group), as well as those treated with PGLP-1 (P11 group) and Exendin-4 (E group), were collected. RNA extraction was performed for comprehensive transcriptome sequencing. Differentially expressed mRNA, microRNA (miRNA), and long-chain non-coding RNA (lncRNA) were identified and subjected to analysis of their respective GO and KEGG pathways. An association network involving mRNA-miRNA-lncRNA was constructed to pinpoint target molecules associated with gluconeogenesis. Furthermore, personalized analysis focused on eight gluconeogenesis-related signal pathways obtained from KEGG.

Results: A total of 289 differentially expressed mRNA (dif-mRNA), 21 differentially expressed miRNA (dif-miRNA), and 463 differentially expressed lncRNA (dif-lncRNA) were screened from the M group and P11 group. 182 dif-mRNA, 239 dif-miRNA, and 384 dif-lncRNA were screened from the M group and E group. A total of 427 dif-mRNA, 261 dif-miRNA, and 525 diflncRNA were screened from the E group and the P11 group. Among them, mRNA was enriched to the PI3K-Akt signaling pathway, Type ll diabetes mellitus, the Insulin signaling pathway, and the PPAR signaling pathway, while lncRNA was mainly enriched in PI3K-Akt signaling pathway. Similar to the whole transcriptome sequencing, the results of gluconeogenesis personalized analysis showed that the PI3K-Akt signaling pathway was the key pathway, and Gck and Cyp7a1 were highly expressed after PGLP-1 was administered.

Conclusions: According to our findings, we believe that PGLP-1 is a potential regulator of noncoding RNAs, including miRNAs and lncRNAs. Additionally, it modulates the PI3K-Akt signaling pathway, resulting in the upregulation of GcK and Cyp7a1. In this way, it effectively inhibits gluconeogenesis.

目的:通过对链脲佐菌素(STZ)诱导的高血糖小鼠肝脏RNA的全面转录组测序,揭示了与高血糖过程相关的关键基因,揭示了它们各自的功能。此外,我们深入探讨了血浆胰高血糖素样肽1 (PGLP-1)的机制及其在抑制糖异生中的作用。方法:收集STZ致高血糖小鼠(M组)及PGLP-1 (P11组)、Exendin-4 (E组)肝组织。提取RNA进行全面的转录组测序。鉴定了差异表达的mRNA、microRNA (miRNA)和长链非编码RNA (lncRNA),并分析了它们各自的GO和KEGG途径。构建了mRNA-miRNA-lncRNA的关联网络,以确定与糖异生相关的靶分子。此外,个性化分析了从KEGG获得的8个糖异生相关信号通路。结果:从M组和P11组共筛选出差异表达mRNA (dif-mRNA) 289个,差异表达miRNA (dif-miRNA) 21个,差异表达lncRNA (dif-lncRNA) 463个。分别从M组和E组中筛选出dif-mRNA 182个、dif-miRNA 239个、dif-lncRNA 384个。从E组和P11组共筛选出427个dif-mRNA、261个dif-miRNA和525个diflncRNA。其中,mRNA富集于PI3K-Akt信号通路、ii型糖尿病、胰岛素信号通路和PPAR信号通路,lncRNA主要富集于PI3K-Akt信号通路。与全转录组测序相似,糖异生个体化分析结果显示,PI3K-Akt信号通路是关键通路,给予PGLP-1后,Gck和Cyp7a1高表达。结论:根据我们的研究结果,我们认为PGLP-1是包括mirna和lncrna在内的非编码rna的潜在调节剂。此外,它调节PI3K-Akt信号通路,导致GcK和Cyp7a1上调。这样,它有效地抑制了糖异生。
{"title":"Analysis of the Mechanism of PGLP-1 Inhibiting Gluconeogenesis Based on Whole Transcriptome Sequencing.","authors":"Huashan Gao, Hao Yu, Weishuang Tong, Weiwei Fan, Yanqun Mai, Wenpo Feng, Yuanhao Qiu","doi":"10.2174/0113892010382822250516034835","DOIUrl":"https://doi.org/10.2174/0113892010382822250516034835","url":null,"abstract":"<p><strong>Objective: </strong>Through comprehensive transcriptome sequencing of liver RNA in mice induced with streptozotocin (STZ) to develop hyperglycemia, we uncovered crucial genes associated with hyperglycemic processes, shedding light on their respective functions. Furthermore, we delved deeply into a discussion surrounding the mechanism behind plasma glucagon-like peptide 1 (PGLP-1) and its role in inhibiting gluconeogenesis.</p><p><strong>Methods: </strong>Liver tissues from mice induced with STZ to develop hyperglycemia (M group), as well as those treated with PGLP-1 (P11 group) and Exendin-4 (E group), were collected. RNA extraction was performed for comprehensive transcriptome sequencing. Differentially expressed mRNA, microRNA (miRNA), and long-chain non-coding RNA (lncRNA) were identified and subjected to analysis of their respective GO and KEGG pathways. An association network involving mRNA-miRNA-lncRNA was constructed to pinpoint target molecules associated with gluconeogenesis. Furthermore, personalized analysis focused on eight gluconeogenesis-related signal pathways obtained from KEGG.</p><p><strong>Results: </strong>A total of 289 differentially expressed mRNA (dif-mRNA), 21 differentially expressed miRNA (dif-miRNA), and 463 differentially expressed lncRNA (dif-lncRNA) were screened from the M group and P11 group. 182 dif-mRNA, 239 dif-miRNA, and 384 dif-lncRNA were screened from the M group and E group. A total of 427 dif-mRNA, 261 dif-miRNA, and 525 diflncRNA were screened from the E group and the P11 group. Among them, mRNA was enriched to the PI3K-Akt signaling pathway, Type ll diabetes mellitus, the Insulin signaling pathway, and the PPAR signaling pathway, while lncRNA was mainly enriched in PI3K-Akt signaling pathway. Similar to the whole transcriptome sequencing, the results of gluconeogenesis personalized analysis showed that the PI3K-Akt signaling pathway was the key pathway, and Gck and Cyp7a1 were highly expressed after PGLP-1 was administered.</p><p><strong>Conclusions: </strong>According to our findings, we believe that PGLP-1 is a potential regulator of noncoding RNAs, including miRNAs and lncRNAs. Additionally, it modulates the PI3K-Akt signaling pathway, resulting in the upregulation of GcK and Cyp7a1. In this way, it effectively inhibits gluconeogenesis.</p>","PeriodicalId":10881,"journal":{"name":"Current pharmaceutical biotechnology","volume":" ","pages":""},"PeriodicalIF":2.2,"publicationDate":"2025-05-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144101577","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Unveiling the Role and Mechanism of Mycoprotein for Reducing Cardiovascular Risk. 揭示真菌蛋白在降低心血管风险中的作用和机制。
IF 2.2 4区 医学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-05-14 DOI: 10.2174/0113892010347951250416140136
Akash Kumar, Yashna Bawa, Jhilam Pramanik, Kajol Batta, Bhupendra Prajapati, Rahul Mehra, Marija Menkinoska, Anka Trajkovska Petkoska

Cardiovascular diseases (CVDs) have the highest mortality rates worldwide. To reduce the risk of CVDs, dietary interventions are a potential approach. This review explores the potential of mycoprotein, a fungal-derived protein, as a dietary approach for maintaining cardiovascular health. A comprehensive literature search was conducted using various databases (Web of Science, Medline, Scopus, Google Scholar, EBSCO, PubMed) and government websites (WHO, CDC) to identify relevant studies. Mycoprotein provides essential amino acids with high bioavailability (0.996) while containing minimal saturated fat (1.5 grams) and high fiber (6 grams). Clinical studies have shown that mycoprotein consumption reduces cholesterol, improves lipid profiles, and potentially lowers blood pressure, possibly due to its impact on gut microbiota (GM) and short-chain fatty acids (SCFAs) production. The intestinal fermentation of mycoprotein fiber increases the abundance of beneficial gut bacteria, binds to Gprotein coupled receptors like GPR41 and 43 to promote vasodilation, inhibits the angiotensinconverting enzyme, and reduces hepatic cholesterol production. Chitin and beta-glucan, the primary fiber of mycoprotein, exhibit anti-inflammatory properties that may contribute to overall cardiovascular health. The study concludes that mycoprotein is a sustainable and nutritious alternative, and its consumption promotes cardiovascular health and reduces CVD risks.

心血管疾病(cvd)是世界上死亡率最高的疾病。为了降低心血管疾病的风险,饮食干预是一种潜在的方法。这篇综述探讨了真菌蛋白(一种真菌衍生的蛋白质)作为维持心血管健康的饮食方法的潜力。通过不同数据库(Web of Science, Medline, Scopus,谷歌Scholar, EBSCO, PubMed)和政府网站(WHO, CDC)进行全面的文献检索,以确定相关研究。真菌蛋白提供具有高生物利用度(0.996)的必需氨基酸,同时含有最少的饱和脂肪(1.5克)和高纤维(6克)。临床研究表明,食用真菌蛋白可降低胆固醇,改善脂质谱,并可能降低血压,这可能是由于其对肠道微生物群(GM)和短链脂肪酸(SCFAs)产生的影响。真菌蛋白纤维的肠道发酵增加了有益肠道细菌的丰度,与GPR41和43等g蛋白偶联受体结合,促进血管舒张,抑制血管紧张素转换酶,降低肝脏胆固醇的产生。几丁质和β -葡聚糖,真菌蛋白的主要纤维,表现出抗炎特性,可能有助于整体心血管健康。该研究得出结论,真菌蛋白是一种可持续的营养替代品,其消费可促进心血管健康并降低心血管疾病风险。
{"title":"Unveiling the Role and Mechanism of Mycoprotein for Reducing Cardiovascular Risk.","authors":"Akash Kumar, Yashna Bawa, Jhilam Pramanik, Kajol Batta, Bhupendra Prajapati, Rahul Mehra, Marija Menkinoska, Anka Trajkovska Petkoska","doi":"10.2174/0113892010347951250416140136","DOIUrl":"https://doi.org/10.2174/0113892010347951250416140136","url":null,"abstract":"<p><p>Cardiovascular diseases (CVDs) have the highest mortality rates worldwide. To reduce the risk of CVDs, dietary interventions are a potential approach. This review explores the potential of mycoprotein, a fungal-derived protein, as a dietary approach for maintaining cardiovascular health. A comprehensive literature search was conducted using various databases (Web of Science, Medline, Scopus, Google Scholar, EBSCO, PubMed) and government websites (WHO, CDC) to identify relevant studies. Mycoprotein provides essential amino acids with high bioavailability (0.996) while containing minimal saturated fat (1.5 grams) and high fiber (6 grams). Clinical studies have shown that mycoprotein consumption reduces cholesterol, improves lipid profiles, and potentially lowers blood pressure, possibly due to its impact on gut microbiota (GM) and short-chain fatty acids (SCFAs) production. The intestinal fermentation of mycoprotein fiber increases the abundance of beneficial gut bacteria, binds to Gprotein coupled receptors like GPR41 and 43 to promote vasodilation, inhibits the angiotensinconverting enzyme, and reduces hepatic cholesterol production. Chitin and beta-glucan, the primary fiber of mycoprotein, exhibit anti-inflammatory properties that may contribute to overall cardiovascular health. The study concludes that mycoprotein is a sustainable and nutritious alternative, and its consumption promotes cardiovascular health and reduces CVD risks.</p>","PeriodicalId":10881,"journal":{"name":"Current pharmaceutical biotechnology","volume":" ","pages":""},"PeriodicalIF":2.2,"publicationDate":"2025-05-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144076591","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Optimization of Hesperidin Nanoparticles as a Promising CYP2E1 and CYP3A11 Regulator in Paracetamol-Intoxicated Mice. 橙皮苷纳米颗粒对扑热息痛中毒小鼠CYP2E1和CYP3A11调控作用的优化
IF 2.2 4区 医学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-05-13 DOI: 10.2174/0113892010336010250212060619
Mona M Mohamed, Mohammed A Hussein, Sahar M Elashmony, Eman R Saifeldeen, Tamer Roshdy, Azza M Metwaly

Background: Hesperidin is a flavonoid found in citrus fruits, particularly in the peel and pulp of oranges and lemons. By encapsulating drugs or bioactive compounds within NPs, it's possible to enhance their stability, solubility, and bioavailability. The current investigation aims to optimize hesperidin nanoparticles (Hes-NPs) and evaluate their hepatoprotective and antioxidant effects in paracetamol-intoxicated mice.

Methods: The characteristics of Hes-NPs were elucidated, including morphology, particle size, zeta potential, UV-vis, entrapment efficiency, and FT-IR spectra. Hes-NPs were also tested for their hepatoprotective and antioxidant effects in paracetamol-treated mice. Safety and toxicity assessments are crucial before pharmacological studies. In addition, liver enzymes, oxidative stress, inflammatory biomarkers, and gene expression of CYP2E1 and CYP3A11 were measured. Furthermore, the study examined the molecular docking of hesperidin with the CYP2E1 and CYP3A11 proteins.

Results: The synthesized Hes-NPs were uniform, spherically shaped, and well dispersed, with no aggregation noted, with a size range of 155.12 ± 14.13 nm. The measured zeta potential value of Hes-NPs was -21.57 ± 0.8 mV with a polydispersity index (PDI) of 0.49. Also, the UV spectra of hesperidin are at 220 and 279 nm, and Hes-NPs have strong absorption at 225 and 280 nm. Also, the LD50 of Hes-NPs was 1137.5 mg/kg b.w. Moreover, administering paracetamol-intoxicated mice with Hes-NPs resulted in improved plasma lipid profile &#40;TC, TG, and HDL-C&#41; and liver enzymes (ALT, AST, ALP, and LDH) as well as oxidative stress (GSH, SOD, CAT, Pr-SHs, and MDA) and inflammatory (TNF-α) biomarker levels, as well as attenuated CYP2E1, and CYP3A11 gene expression. In-silicon results proved that hesperidin showed a stronger estimated binding affinity with a ∆G of -8.6 and -10.5 kcal/mol. towards CYP2E1, and CYP3A11 activity, respectively. Our results showed that hesperidin forms hydrogen bonds with amino acid residues through the 9 and 12 bonds of CYP2E1 and CYP3A11, respectively.

Conclusion: Hes-NPs could offer several advantages. It can be designed to specifically target liver cells, minimizing off-target effects, enhancing bioavailability, and shielding hesperidin from degradation in the body. The current results suggest that Hes-NPs may enhance antioxidant defenses and protect against oxidative stress in paracetamol-intoxicated mice.

背景:橙皮苷是一种类黄酮,存在于柑橘类水果中,尤其是橘子和柠檬的果皮和果肉中。通过在NPs内包封药物或生物活性化合物,可以提高其稳定性,溶解度和生物利用度。本研究旨在优化橙皮苷纳米颗粒(Hes-NPs),并评估其对扑热息痛中毒小鼠的肝保护和抗氧化作用。方法:对Hes-NPs的形貌、粒径、zeta电位、UV-vis、包封效率、FT-IR光谱等进行表征。在对乙酰氨基酚处理的小鼠中也测试了Hes-NPs的肝保护和抗氧化作用。安全性和毒性评估在药理学研究之前至关重要。此外,检测肝酶、氧化应激、炎症生物标志物以及CYP2E1和CYP3A11的基因表达。此外,本研究还检测了橙皮苷与CYP2E1和CYP3A11蛋白的分子对接。结果:合成的Hes-NPs均匀,呈球形,分散良好,无聚集现象,粒径范围为155.12±14.13 nm。测得Hes-NPs的zeta电位值为-21.57±0.8 mV, PDI为0.49。橙皮苷在220和279 nm处有较强的紫外吸收,在225和280 nm处有较强的吸收。此外,Hes-NPs的LD50为1137.5 mg/kg b.w。此外,给予对乙酰氨基酚中毒小鼠Hes-NPs可改善血浆脂质水平[amp;#40];TC, TG和hdl - c [amp;#41];肝酶(ALT、AST、ALP和LDH)、氧化应激(GSH、SOD、CAT、Pr-SHs和MDA)和炎症(TNF-α)生物标志物水平,以及CYP2E1和CYP3A11基因表达减弱。In-silicon实验结果表明橙皮苷具有较强的结合亲和力,∆G为-8.6和-10.5 kcal/mol。分别影响CYP2E1和CYP3A11活性。我们的研究结果表明橙皮苷分别通过CYP2E1和CYP3A11的9和12键与氨基酸残基形成氢键。结论:Hes-NPs具有多种优势。它可以被设计成专门针对肝细胞,最大限度地减少脱靶效应,提高生物利用度,并屏蔽橙皮苷在体内降解。目前的研究结果表明,Hes-NPs可能增强对乙酰氨基酚中毒小鼠的抗氧化防御和抗氧化应激。
{"title":"Optimization of Hesperidin Nanoparticles as a Promising CYP2E1 and CYP3A11 Regulator in Paracetamol-Intoxicated Mice.","authors":"Mona M Mohamed, Mohammed A Hussein, Sahar M Elashmony, Eman R Saifeldeen, Tamer Roshdy, Azza M Metwaly","doi":"10.2174/0113892010336010250212060619","DOIUrl":"https://doi.org/10.2174/0113892010336010250212060619","url":null,"abstract":"<p><strong>Background: </strong>Hesperidin is a flavonoid found in citrus fruits, particularly in the peel and pulp of oranges and lemons. By encapsulating drugs or bioactive compounds within NPs, it's possible to enhance their stability, solubility, and bioavailability. The current investigation aims to optimize hesperidin nanoparticles (Hes-NPs) and evaluate their hepatoprotective and antioxidant effects in paracetamol-intoxicated mice.</p><p><strong>Methods: </strong>The characteristics of Hes-NPs were elucidated, including morphology, particle size, zeta potential, UV-vis, entrapment efficiency, and FT-IR spectra. Hes-NPs were also tested for their hepatoprotective and antioxidant effects in paracetamol-treated mice. Safety and toxicity assessments are crucial before pharmacological studies. In addition, liver enzymes, oxidative stress, inflammatory biomarkers, and gene expression of CYP2E1 and CYP3A11 were measured. Furthermore, the study examined the molecular docking of hesperidin with the CYP2E1 and CYP3A11 proteins.</p><p><strong>Results: </strong>The synthesized Hes-NPs were uniform, spherically shaped, and well dispersed, with no aggregation noted, with a size range of 155.12 ± 14.13 nm. The measured zeta potential value of Hes-NPs was -21.57 ± 0.8 mV with a polydispersity index (PDI) of 0.49. Also, the UV spectra of hesperidin are at 220 and 279 nm, and Hes-NPs have strong absorption at 225 and 280 nm. Also, the LD50 of Hes-NPs was 1137.5 mg/kg b.w. Moreover, administering paracetamol-intoxicated mice with Hes-NPs resulted in improved plasma lipid profile &amp;#40;TC, TG, and HDL-C&amp;#41; and liver enzymes (ALT, AST, ALP, and LDH) as well as oxidative stress (GSH, SOD, CAT, Pr-SHs, and MDA) and inflammatory (TNF-α) biomarker levels, as well as attenuated CYP2E1, and CYP3A11 gene expression. In-silicon results proved that hesperidin showed a stronger estimated binding affinity with a ∆G of -8.6 and -10.5 kcal/mol. towards CYP2E1, and CYP3A11 activity, respectively. Our results showed that hesperidin forms hydrogen bonds with amino acid residues through the 9 and 12 bonds of CYP2E1 and CYP3A11, respectively.</p><p><strong>Conclusion: </strong>Hes-NPs could offer several advantages. It can be designed to specifically target liver cells, minimizing off-target effects, enhancing bioavailability, and shielding hesperidin from degradation in the body. The current results suggest that Hes-NPs may enhance antioxidant defenses and protect against oxidative stress in paracetamol-intoxicated mice.</p>","PeriodicalId":10881,"journal":{"name":"Current pharmaceutical biotechnology","volume":" ","pages":""},"PeriodicalIF":2.2,"publicationDate":"2025-05-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144076590","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Current pharmaceutical biotechnology
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