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Dataset of infected date palm leaves for palm tree disease detection and classification 用于棕榈树疾病检测和分类的受感染枣椰树叶数据集
IF 1 Q3 MULTIDISCIPLINARY SCIENCES Pub Date : 2024-09-11 DOI: 10.1016/j.dib.2024.110933
Abdallah Namoun , Ahmad B. Alkhodre , Adnan Ahmad Abi Sen , Yazed Alsaawy , Hani Almoamari
This article presents an image dataset of palm leaf diseases to aid the early identification and classification of date palm infections. The dataset contains images of 8 main types of disorders affecting date palm leaves, three of which are physiological, four are fungal, and one is caused by pests. Specifically, the collected samples exhibit symptoms and signs of potassium deficiency, manganese deficiency, magnesium deficiency, black scorch, leaf spots, fusarium wilt, rachis blight, and parlatoria blanchardi. Moreover, the dataset includes a baseline of healthy palm leaves. In total, 608 raw images were captured over a period of three months, coinciding with the autumn and spring seasons, from 10 real date farms in the Madinah region of Saudi Arabia. The images were captured using smartphones and an SLR camera, focusing mainly on inflected leaves and leaflets. Date palm fruits, trunks, and roots are beyond the focus of this dataset. The infected leaf images were filtered, cropped, augmented, and categorized into their disease classes. The resulting processed dataset comprises 3089 images. Our proposed dataset can be used to train classification deep learning models of infected date palm leaves, thus enabling the early prevention of palm tree-related diseases.
本文介绍了一个棕榈叶病图像数据集,以帮助早期识别和分类枣椰树感染。该数据集包含影响枣椰叶片的 8 种主要病害的图像,其中 3 种是生理性病害,4 种是真菌性病害,1 种是害虫引起的病害。具体来说,收集到的样本表现出缺钾、缺锰、缺镁、黑焦、叶斑、镰刀菌枯萎病、穗轴枯萎病和白粉病的症状和体征。此外,数据集还包括健康棕榈叶的基线。在沙特阿拉伯麦地那地区的 10 个真实椰枣农场中,共采集了 608 张原始图像,时间跨度为三个月,与秋季和春季相吻合。这些图像是使用智能手机和单反相机拍摄的,主要集中在叶片和小叶上。椰枣果实、树干和根不在本数据集的重点范围内。受感染的叶片图像经过过滤、裁剪、扩增,并按病害类别进行分类。处理后的数据集包括 3089 张图像。我们提出的数据集可用于训练受感染枣椰树叶的分类深度学习模型,从而实现对棕榈树相关疾病的早期预防。
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引用次数: 0
Antimicrobial resistance dataset for pattern recognition in machine learning application 用于机器学习应用模式识别的抗菌药耐药性数据集
IF 1 Q3 MULTIDISCIPLINARY SCIENCES Pub Date : 2024-09-10 DOI: 10.1016/j.dib.2024.110922
Bukola O. Atobatele , Segun Adebayo , Odunola O. Olaniran , Abimbola A. Owoseni

This study presents a dataset of bacterial isolates collected from abattoirs in Osun State, Nigeria, designed to support research on antimicrobial resistance (AMR). The environment plays a critical role in the development and spread of AMR, posing a growing threat to global health. This dataset aims to address challenges in antibiotic selection by enabling the prediction of effective drugs for specific bacterial infections.

本研究介绍了从尼日利亚奥逊州屠宰场收集的细菌分离物数据集,旨在支持抗菌药耐药性(AMR)研究。环境在 AMR 的发展和传播中起着至关重要的作用,对全球健康构成日益严重的威胁。该数据集旨在通过预测针对特定细菌感染的有效药物来应对抗生素选择方面的挑战。
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引用次数: 0
Pixel-wise annotation for clear and contaminated regions segmentation in wireless capsule endoscopy images: A multicentre database 无线胶囊内窥镜图像中清晰和污染区域分割的像素注释:多中心数据库
IF 1 Q3 MULTIDISCIPLINARY SCIENCES Pub Date : 2024-09-10 DOI: 10.1016/j.dib.2024.110927
Vahid Sadeghi , Yasaman Sanahmadi , Maryam Behdad , Alireza Vard , Mohsen Sharifi , Ahmad Raeisi , Mehdi Nikkhah , Alireza Mehridehnavi
<div><p>Wireless capsule endoscopy (WCE) is capable of non-invasively visualizing the small intestine, the most complicated segment of the gastrointestinal tract, to detect different types of abnormalities. However, its main drawback is reviewing the vast number of captured images (more than 50,000 frames). The recorded images are only sometimes clear, and different contaminating agents, such as turbid materials and air bubbles, degrade the visualization quality of the WCE images. This condition could cause serious problems such as reducing mucosal view visualization, prolonging recorded video reviewing time, and increasing the risks of missing pathology. On the other hand, accurately quantifying the amount of turbid fluids and bubbles can indicate potential motility malfunction. To assist in developing computer vision-based techniques, we have constructed the first multicentre publicly available clear and contaminated annotated dataset by precisely segmenting 17,593 capsule endoscopy images from three different databases.</p><p>In contrast to the existing datasets, our dataset has been annotated at the pixel level, discriminating the clear and contaminated regions and subsequently differentiating bubbles and turbid fluids from normal tissue. To create the dataset, we first selected all of the images (2906 frames) in the reduced mucosal view class covering different levels of contamination and randomly selected 12,237 images from the normal class of the copyright-free CC BY 4.0 licensed small bowel capsule endoscopy (SBCE) images from the Kvasir capsule endoscopy database. To mitigate the possible available bias in the mentioned dataset and to increase the sample size, the number of 2077 and 373 images have been stochastically chosen from the SEE-AI project and CECleanliness datasets respectively for the subsequent annotation. Randomly selected images have been annotated with the aid of ImageJ and ITK-SNAP software under the supervision of an expert SBCE reader with extensive experience in gastroenterology and endoscopy. For each image, two binary and tri-colour ground truth (GT) masks have been created in which each pixel has been indexed into two classes (clear and contaminated) and three classes (bubble, turbid fluids, and normal), respectively.</p><p>To the best of the author's knowledge, there is no implemented clear and contaminated region segmentation on the capsule endoscopy reading software. Curated multicentre dataset can be utilized to implement applicable segmentation algorithms for identification of clear and contaminated regions and discrimination bubbles, as well as turbid fluids from normal tissue in the small intestine.</p><p>Since the annotated images belong to three different sources, they provide a diverse representation of the clear and contaminated patterns in the WCE images. This diversity is valuable for training the models that are more robust to variations in data characteristics and can generalize well across different
无线胶囊内窥镜(WCE)能够无创观察胃肠道中最复杂的小肠,检测不同类型的异常。然而,它的主要缺点是需要查看大量捕获的图像(超过 50,000 帧)。所记录的图像有时并不清晰,各种污染物(如浑浊物质和气泡)会降低 WCE 图像的可视化质量。这种情况可能会导致严重的问题,如降低粘膜视图的可视性、延长记录视频的查看时间以及增加遗漏病理的风险。另一方面,准确量化浑浊液体和气泡的数量可提示潜在的运动障碍。为了帮助开发基于计算机视觉的技术,我们对来自三个不同数据库的 17,593 张胶囊内窥镜图像进行了精确分割,从而构建了首个多中心公开可用的清晰和污染注释数据集。与现有数据集不同,我们的数据集在像素级别上进行了注释,区分了清晰和污染区域,随后又将气泡和浑浊液体与正常组织区分开来。为了创建该数据集,我们首先在缩小的粘膜视图类别中选取了涵盖不同污染程度的所有图像(2906 帧),然后从 Kvasir 胶囊内窥镜数据库中无版权限制的 CC BY 4.0 许可的小肠胶囊内窥镜(SBCE)图像中随机选取了 12237 幅正常类别的图像。为了减少上述数据集中可能存在的偏差并增加样本量,我们分别从 SEE-AI 项目和 CECleanliness 数据集中随机选择了 2077 张和 373 张图像进行注释。随机选取的图像在一位在胃肠病学和内窥镜检查方面具有丰富经验的 SBCE 专家读者的指导下,借助 ImageJ 和 ITK-SNAP 软件进行了标注。据笔者所知,胶囊内镜阅读软件还没有实现清晰和污染区域的分割。由于注释图像来自三个不同的来源,它们提供了 WCE 图像中清晰和污染模式的多样性。这种多样性对训练模型很有价值,因为模型对数据特征的变化更加稳健,并能在不同对象和环境中很好地泛化。将来自三个不同中心的图像包括在内,可以提供稳健的交叉验证机会,即基于计算机视觉的模型可以在一个中心的注释图像上进行训练,并在其他中心的注释图像上进行评估。
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引用次数: 0
Transcriptome datasets of maize plant cultures treated with humic- and amino acids 用腐殖酸和氨基酸处理的玉米植物培养物的转录组数据集
IF 1 Q3 MULTIDISCIPLINARY SCIENCES Pub Date : 2024-09-10 DOI: 10.1016/j.dib.2024.110900
Kincső Decsi , Mostafa Ahmed , Roquia Rizk , Donia Abdul-Hamid , Zsolt Vaszily , Zoltán Tóth

There has been a global surge in the need for commercially accessible plant conditioners that are derived from natural ingredients and are therefore environmentally benign. Currently, sustainable agriculture and minimizing the ecological impact are of great importance. Preparations that contain commonly used humic acids and/or natural amino acids are ideal for meeting these criteria. An investigation was conducted to examine the impact of three plant foliar fertilizers containing humic acid and one fertilizer containing a combination of humic and amino acids on maize crops. By employing the shallow mRNA sequencing technique, we acquired datasets that, once processed, are ideal for investigating the impacts of the foliar fertilizers examined in the study. Five SRA datasets were uploaded to NCBI. These datasets include the TSA (Transcriptome Shotgun Assembly), the contigs that were blasted, mapped, and annotated from the pre-processed datasets, as well as the count table obtained from the RNA-seq read quantification. All of these data are included in the Mendeley database. In the future, the databases will enable the investigation of alterations in plant biochemical processes at the gene expression level.

全球对从天然成分中提取的、对环境无害的、可在市场上买到的植物调节剂的需求激增。目前,可持续农业和最大限度地减少对生态的影响非常重要。含有常用腐植酸和/或天然氨基酸的制剂是满足这些标准的理想选择。本研究调查了三种含腐植酸的植物叶面肥和一种含腐植酸和氨基酸的复合肥对玉米作物的影响。通过采用浅层 mRNA 测序技术,我们获得了数据集,经过处理后,这些数据集非常适合研究中考察的叶面肥的影响。我们向 NCBI 上传了五个 SRA 数据集。这些数据集包括 TSA(转录组散弹枪组装)、从预处理数据集中爆破、映射和注释的等位基因,以及从 RNA-seq 读数量化中获得的计数表。所有这些数据都包含在 Mendeley 数据库中。未来,这些数据库将有助于在基因表达水平上研究植物生化过程的变化。
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引用次数: 0
A comprehensive cotton leaf disease dataset for enhanced detection and classification 用于增强检测和分类的棉花叶病综合数据集
IF 1 Q3 MULTIDISCIPLINARY SCIENCES Pub Date : 2024-09-10 DOI: 10.1016/j.dib.2024.110913
Prayma Bishshash, Asraful Sharker Nirob, Habibur Shikder, Afjal Hossan Sarower, Touhid Bhuiyan, Sheak Rashed Haider Noori

The creation and use of a comprehensive cotton leaf disease dataset offer significant benefits in agricultural research, precision farming, and disease management. This dataset enables the development of accurate machine learning models for early disease detection, reducing manual inspections and facilitating timely interventions. It serves as a benchmark for testing algorithms and training deep learning models, aiding in automated monitoring and decision support tools in precision agriculture. This leads to targeted interventions, reduced chemical use, and improved crop management. Global collaboration is fostered, contributing to the development of disease-resistant cotton varieties and effective management strategies, ultimately reducing economic losses and promoting sustainable farming. Field surveys conducted from October 2023 to January 2024 ensured meticulous image capture under diverse conditions. The images are categorized into eight classes, representing specific disease manifestations, pests, or environmental stress in cotton plants. The dataset comprises 2137 original images and 7000 augmented images, enhancing deep learning model training. The Inception V3 model demonstrated high performance, with an overall accuracy of 96.03 %. This underscores the dataset's potential in advancing automated disease detection in cotton agriculture.

创建和使用全面的棉花叶病数据集可为农业研究、精准农业和病害管理带来显著效益。该数据集有助于开发用于早期病害检测的精确机器学习模型,减少人工检查,促进及时干预。它是测试算法和训练深度学习模型的基准,有助于精准农业中的自动监测和决策支持工具。这有助于采取有针对性的干预措施,减少化学品的使用,改善作物管理。促进全球合作,有助于开发抗病棉花品种和有效的管理策略,最终减少经济损失,促进可持续农业发展。2023 年 10 月至 2024 年 1 月期间进行的实地调查确保了在各种条件下进行细致的图像采集。图像被分为八类,分别代表棉花植物的特定疾病表现、虫害或环境压力。该数据集包括 2137 幅原始图像和 7000 幅增强图像,用于加强深度学习模型的训练。Inception V3 模型表现出很高的性能,总体准确率达到 96.03%。这凸显了该数据集在推进棉花农业病害自动检测方面的潜力。
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引用次数: 0
Experimental dataset for loads on hard rock shotcrete tunnel linings in a laboratory environment 在实验室环境中对硬岩喷射混凝土隧道衬砌施加荷载的实验数据集
IF 1 Q3 MULTIDISCIPLINARY SCIENCES Pub Date : 2024-09-10 DOI: 10.1016/j.dib.2024.110920
August Jansson , Ignasi Fernandez , Carlos Gil Berrocal , Rasmus Rempling
To improve the understanding of failure mechanisms and behaviour of hard rock tunnel linings, local load conditions were experimentally simulated and monitored using a comprehensive set of sensors and imaging techniques. The data includes measurements from distributed optical fiber sensors (DOFS), high-resolution cameras, load cells, pressure cells and LVDTs. Two types of loads were examined: rock block load and bond loss combined with a distributed load over the area of lost bond. The experiments replicated these conditions and were conducted in a laboratory setting where the shotcrete and substrate rock were substituted by cast fiber reinforced concrete (FRC) and cast concrete, respectively.
To facilitate the loads, concrete cones were cast into the substrate concrete and pushed through the FRC top layer with a hydraulic jack to mimic rock block loads. To simulate the bond loss and the associated distributed load, lifting bags were installed and inflated between the FRC layer and substrate cast concrete. All specimens were monitored using DOFS embedded in two perpendicular directions and in two layers in the top FRC layer. In addition, the hydraulic jack was instrumented with LVDTs and load cells to measure displacement and load, and the pressure in the lifting bags was monitored using a pressure cell. Two cameras continuously photographed the top surface of the FRC layer, which had been painted with a speckle pattern, during the testing and the pictures can be used for digital image correlation (DIC). Lastly, each specimen was scanned with a 3D scanner prior to and after testing of the specimen.
为了更好地了解硬岩隧道衬砌的失效机理和行为,使用一套完整的传感器和成像技术对局部负载条件进行了实验模拟和监测。数据包括分布式光纤传感器 (DOFS)、高分辨率相机、称重传感器、压力传感器和 LVDT 的测量结果。测试了两种类型的载荷:岩块载荷和粘结力损失,以及粘结力损失区域的分布式载荷。实验复制了这些条件,并在实验室环境中进行,其中喷射混凝土和底层岩石分别由浇注的纤维增强混凝土(FRC)和浇注的混凝土替代。为了便于加载,在底层混凝土中浇注了混凝土锥,并用液压千斤顶推过 FRC 表层,以模拟岩块加载。为了模拟粘接损失和相关的分布荷载,在 FRC 层和底层浇注混凝土之间安装并充气了起重袋。所有试样均使用 DOFS 进行监测,DOFS 分两层嵌入两个垂直方向的顶部 FRC 层中。此外,还在液压千斤顶上安装了测量位移和荷载的 LVDT 和称重传感器,并使用压力传感器监测提升袋中的压力。在测试过程中,两台照相机连续拍摄了涂有斑点图案的 FRC 层顶面,这些照片可用于数字图像关联(DIC)。最后,在试样测试之前和之后,使用 3D 扫描仪对每个试样进行扫描。
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引用次数: 0
BDPapayaLeaf: A dataset of papaya leaf for disease detection, classification, and analysis BDPapayaLeaf:用于疾病检测、分类和分析的木瓜叶数据集
IF 1 Q3 MULTIDISCIPLINARY SCIENCES Pub Date : 2024-09-10 DOI: 10.1016/j.dib.2024.110910
Sumaya Mustofa, Md Taimur Ahad, Yousuf Rayhan Emon, Arpita Sarker
Papaya is a popular vegetable and fruit in both developing and developed countries. Nonetheless, Bangladeshʼs agricultural landscape is significantly influenced by papaya cultivation. However, disease is a common impediment to papaya productivity, adversely affecting papaya quality and yield and leading to substantial economic losses for farmers. Research suggests that computer-aided disease diagnosis and machine learning (ML) models can improve papaya production by detecting and classifying diseases. In this line, a dataset of papaya is required to diagnose the disease. Moreover, like many other fruits, papaya disease may vary from country to country. Therefore, the country-based papaya disease dataset is required. In this study, a papaya dataset is collected from Dhaka, Bangladesh. This dataset contains 2159 original images from five classes, including the healthy control class and four papaya leaf diseases: Anthracnose, Bacterial Spot, Curl, and Ring spot. Besides the original images, the dataset contains 210 annotated data for each of the five classes. The dataset contains two types of data: the whole image and the annotated image. The image will interest data scientists who apply disease detection through a convolutional neural network (CNN) and its variants. Furthermore, the annotated images, such as You Only Look Once (YOLO), U-Net, Mask R-CNN, and Single Shot Detection (SSD), will be helpful for semantic segmentation. Since firm-applicable AI devices and mobile and web applications are in demand, the dataset collected in this study will offer multiple options for integrating ML models into AI devices. In countries with weather and climate similar to Bangladesh, data scientists may use their dataset in that context.
木瓜在发展中国家和发达国家都是很受欢迎的蔬菜和水果。然而,孟加拉国的农业景观深受木瓜种植的影响。然而,病害是木瓜生产的常见障碍,对木瓜的质量和产量造成不利影响,并给农民带来巨大的经济损失。研究表明,计算机辅助病害诊断和机器学习(ML)模型可以通过检测和分类病害来提高木瓜产量。在这一思路中,需要一个木瓜数据集来诊断疾病。此外,与许多其他水果一样,木瓜病害也会因国家而异。因此,需要基于国家的木瓜疾病数据集。本研究从孟加拉国达卡收集了一个木瓜数据集。该数据集包含 5 个类别的 2159 张原始图像,其中包括健康对照类别和 4 种木瓜叶片病害:炭疽病、菌斑病、卷曲病和环斑病。除原始图像外,数据集还包含五个类别中每个类别的 210 个注释数据。数据集包含两类数据:完整图像和注释图像。通过卷积神经网络(CNN)及其变体进行疾病检测的数据科学家会对图像感兴趣。此外,注释图像,如 "你只看一次(YOLO)"、U-Net、掩码 R-CNN 和单次拍摄检测(SSD),将有助于语义分割。由于企业适用的人工智能设备以及移动和网络应用需求旺盛,本研究收集的数据集将为将 ML 模型集成到人工智能设备中提供多种选择。在天气和气候与孟加拉国相似的国家,数据科学家可以在这种情况下使用他们的数据集。
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引用次数: 0
A comprehensive dataset and image-set for exploring buccal dental microwear in late prehistory farming groups from northeastern Iberian Peninsula 探索伊比利亚半岛东北部史前晚期农耕群体颊齿微磨损的综合数据集和图像集
IF 1 Q3 MULTIDISCIPLINARY SCIENCES Pub Date : 2024-09-10 DOI: 10.1016/j.dib.2024.110929
Raquel Hernando

This data article presents a comprehensive buccal dental microwear raw database, accompanied by all corresponding archaeological sample micrographs acquired through a ZEISS Axioscope A1 optical microscopy (OM). The dataset includes teeth specimens from 88 adult individuals, representing eight distinct groups spanning the Middle-Late Neolithic to the Middle Bronze Age from the northeastern Iberian Peninsula. These groups include Cova de l'Avi, Cova de Can Sadurní, Cova de la Guineu, Cova Foradada, Cova del Trader, Roc de les Orenetes, Cova del Gegant, and Cova dels Galls Carboners.

The data collection process was based on the use of optical microscopy to obtain dental microwear patterns, with a specific focus on the buccal surface of the teeth. To facilitate future comparative studies, we have also included all the micrographs obtained with the optical microscopy and the processed images with the counted striations. The presentation of this extensive dataset sets a base for future research on dental microwear patterns and dietary variations across various prehistoric periods.

这篇文章介绍了一个全面的颊面牙微磨损原始数据库,并附有通过蔡司 Axioscope A1 光学显微镜(OM)获得的所有相应考古样本显微照片。该数据集包括来自伊比利亚半岛东北部 88 个成年个体的牙齿标本,代表了从新石器时代中晚期到青铜时代中期的八个不同族群。这些群体包括 Cova de l'Avi、Cova de Can Sadurní、Cova de la Guineu、Cova Foradada、Cova del Trader、Roc de les Orenetes、Cova del Gegant 和 Cova dels Galls Carboners。为了便于今后的比较研究,我们还将光学显微镜获得的所有显微照片和经过处理的带有计数条纹的图像都包括在内。这一广泛的数据集为今后研究不同史前时期的牙齿微磨损模式和饮食变化奠定了基础。
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引用次数: 0
Dataset on the decolorization of Naphthol Green B using a UV/sulfite system: Optimization by response surface methodology 使用紫外线/亚硫酸盐系统对萘酚绿 B 进行脱色的数据集:响应面法优化
IF 1 Q3 MULTIDISCIPLINARY SCIENCES Pub Date : 2024-09-10 DOI: 10.1016/j.dib.2024.110924
Juan Miguel E. Caguiat , Eldric Roland U. Tiu , Adrian D. Go , Francis M. dela Rosa , Eric R. Punzalan

Naphthol Green B (NGB) is a synthetic azo dye widely used in various industries, including textiles and leathers. NGB poses significant environmental and ecological concerns when released into natural water systems. This paper investigates the decolorization of NGB using UV/sulfite system. The % decolorization of NGB was optimized using 32 Full Factorial Design (FFD), and the ANOVA results show that the model has a good fit for the data (R2 = 99.54 %, R2(adj) = 98.76 %) and the significant factors contributing to the % decolorization are A, B, A2, and B2 where A = mM sulfite and B = pH. The model predicted ≥100 % decolorization with the optimum conditions 12 mM sulfite and pH 10. An actual experiment was conducted to verify the response, resulting in 96.2 % decolorization which is in good agreement with the model.

萘酚绿 B (NGB) 是一种合成偶氮染料,广泛用于纺织品和皮革等多个行业。当 NGB 释放到自然水系中时,会对环境和生态造成严重影响。本文利用紫外线/亚硫酸盐系统研究了 NGB 的脱色问题。方差分析结果表明,模型与数据拟合良好(R2 = 99.54 %,R2(adj) = 98.76 %),影响脱色率的重要因素有 A、B、A2 和 B2,其中 A = mM 亚硫酸盐,B = pH 值。该模型预测脱色率≥100%,最佳条件为亚硫酸盐 12 毫摩尔,pH 值 10。实际实验验证了这一反应,结果脱色率为 96.2%,与模型十分吻合。
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引用次数: 0
Draft genome sequence data of Pythium cedri Chen 4, the causal pathogen of deodar cedar root rot 雪松根腐病病原体 Pythium cedri Chen 4 的基因组序列数据草案
IF 1 Q3 MULTIDISCIPLINARY SCIENCES Pub Date : 2024-09-10 DOI: 10.1016/j.dib.2024.110930
Jin-Feng Peng , Yusufjon Gafforov , Jian Yu , Hong-Jun Yang , Yuan-Yuan Chen , Yi-Fan Xing , Jia-Jia Chen

Pythium species are distributed globally, with certain members playing significant roles as plant and animal pathogens. Pythium cedri Chen 4 has been identified as a pathogenic isolate responsible for causing root rot on Cedrus deodara. Here, a comprehensive genome-wide sequence of P. cedri strain Chen 4 utilizing the Illumina NovaSeq sequencing platform and a Pacific Biosciences Sequel sequencing platform is presented. The genome of P. cedri strain Chen 4 was assembled into 150 contigs containing a combined size of 41.25 Mb, N50 value of 1,717,859 bp and N90 value of 431,829 bp. Genome annotation revealed 14,077 protein-encoding genes and 364 of the 1016 predicted proteins were putative effectors. The present work enriches the genetic resources of P. cedri for studying its evolution and can contribute to a better understanding of P. cedri–host interaction.

Pythium 菌种分布在全球各地,其中某些成员作为植物和动物病原体发挥着重要作用。Pythium cedri Chen 4 已被鉴定为导致雪松根腐病的致病分离株。本文利用 Illumina NovaSeq 测序平台和 Pacific Biosciences Sequel 测序平台对 P. cedri 株 Chen 4 进行了全面的全基因组测序。Cedri 菌株 Chen 4 的基因组被组装成 150 个等位组,总大小为 41.25 Mb,N50 值为 1,717,859 bp,N90 值为 431,829 bp。基因组注释发现了 14,077 个编码蛋白质的基因,1016 个预测蛋白质中有 364 个是假定的效应蛋白。本研究丰富了 P. cedri 的遗传资源,有助于研究其进化,并有助于更好地理解 P. cedri 与宿主的相互作用。
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引用次数: 0
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