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A prioritization tool for cilia-associated genes and their in vivo resources unveil new avenues for ciliopathy research. 纤毛相关基因优先排序工具及其体内资源为纤毛病研究开辟了新途径。
IF 4.3 3区 医学 Q2 CELL BIOLOGY Pub Date : 2024-09-12 DOI: 10.1242/dmm.052000
Robert E Van Sciver,Tamara Caspary
Defects in ciliary signaling or mutations in proteins that localize to primary cilia lead to a class of human diseases known as ciliopathies. About 10% of mammalian genes encode cilia-associated proteins and a major gap in the cilia research field is prioritizing which genes to study and finding the in vivo vertebrate mutant alleles and reagents available for their study. Here we present a unified resource listing the cilia-associated human genes cross-referenced to available mouse and zebrafish mutant alleles, their associated phenotypes as well as expression data in kidney and functional data for vertebrate Hedgehog signaling. This resource empowers researchers to easily sort and filter genes based on their own expertise and priorities, cross-reference with newly-generated -omics datasets, and quickly find in vivo resources and phenotypes associated with a gene of interest.
纤毛信号的缺陷或定位在初级纤毛上的蛋白质的突变会导致一类被称为纤毛疾病的人类疾病。哺乳动物中约有 10% 的基因编码纤毛相关蛋白,而纤毛研究领域的一个主要空白是确定哪些基因需要优先研究,以及寻找可用于研究的脊椎动物体内突变等位基因和试剂。在这里,我们提供了一个统一的资源,列出了与纤毛相关的人类基因、小鼠和斑马鱼突变等位基因、它们的相关表型以及在肾脏中的表达数据和脊椎动物刺猬信号转导的功能数据。该资源使研究人员能够根据自己的专长和优先事项轻松分类和筛选基因,与新生成的组学数据集进行交叉引用,并快速找到与感兴趣的基因相关的体内资源和表型。
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引用次数: 0
Deficient GATA6-CXCR7 signaling leads to bicuspid aortic valve. GATA6-CXCR7 信号缺陷导致主动脉瓣双瓣。
IF 4.3 3区 医学 Q2 CELL BIOLOGY Pub Date : 2024-09-10 DOI: 10.1242/dmm.050934
Rebeca Piñeiro-Sabarís,Donal MacGrogan,José Luis de la Pompa
The cardiac outflow tract (OFT) transiently links the ventricles to the aortic sac and forms the arterial valves. Abnormalities in these valves, such as bicuspid aortic valve (BAV), are common congenital anomalies. GATA6-inactivating variants cause cardiac OFT defects and BAV, but their mechanisms are unclear. We generated Gata6STOP/+ mice using CRISPR-Cas9, which show highly penetrant BAV (70%) and membranous ventricular septal defects (43%). These mice exhibited decreased proliferation and increased ISL1-positive progenitor cells in the OFT, indicating abnormal cardiovascular differentiation. Gata6 deletion with the Mef2cCre driver line recapitulated Gata6STOP/+ phenotypes, indicating a cell-autonomous role for Gata6 in the second heart field. Gata6STOP/+ mice showed reduced OFT length and caliber, associated with deficient cardiac neural crest cell contribution, which may cause valvulo-septal defects. RNA-sequencing analysis showed depletion in pathways related to cell proliferation and migration, highlighting Cxcr7 (also known as Ackr3) as a candidate gene. Reduced mesenchymal cell migration and invasion were observed in Gata6STOP/+ OFT tissue. CXCR7 agonists reduced mesenchymal cell migration and increased invasion in wild-type but not in Gata6STOP/+ explants, indicating the GATA6-dependent role of CXCR7 in OFT development and its potential link to BAV.
心脏流出道(OFT)瞬间连接心室和主动脉囊,并形成动脉瓣膜。这些瓣膜的异常,如主动脉瓣二尖瓣(BAV),是常见的先天性畸形。GATA6失活变体会导致心脏OFT缺陷和BAV,但其机制尚不清楚。我们利用 CRISPR-Cas9 生成了 Gata6STOP/+ 小鼠,它们表现出高穿透性 BAV(70%)和膜室间隔缺损(43%)。这些小鼠在 OFT 中表现出增殖减少和 ISL1 阳性祖细胞增多,表明心血管分化异常。用 Mef2cCre 驱动系缺失 Gata6 可重现 Gata6STOP/+ 表型,这表明 Gata6 在第二心田具有细胞自主作用。Gata6STOP/+小鼠的OFT长度和口径减少,这与心脏神经嵴细胞贡献不足有关,可能导致瓣膜-室间隔缺陷。RNA测序分析表明,与细胞增殖和迁移相关的通路出现缺失,Cxcr7(又称Ackr3)是一个候选基因。在 Gata6STOP/+ OFT 组织中观察到间质细胞迁移和侵袭减少。CXCR7激动剂能减少野生型间质细胞的迁移并增加侵袭,但不能增加Gata6STOP/+外植体的侵袭,这表明CXCR7在OFT发育过程中起着依赖于GATA6的作用,并可能与BAV有关。
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引用次数: 0
eEF1α2 is required for actin cytoskeleton homeostasis in the aging muscle. eEF1α2 是老化肌肉肌动蛋白细胞骨架平衡所必需的。
IF 4 3区 医学 Q2 CELL BIOLOGY Pub Date : 2024-09-01 Epub Date: 2024-08-29 DOI: 10.1242/dmm.050729
Hidetaka Katow, Hyung Don Ryoo

The translation elongation factor eEF1α (eukaryotic elongation factor 1α) mediates mRNA translation by delivering aminoacyl-tRNAs to ribosomes. eEF1α also has other reported roles, including the regulation of actin dynamics. However, these distinct roles of eEF1α are often challenging to uncouple and remain poorly understood in aging metazoan tissues. The genomes of mammals and Drosophila encode two eEF1α paralogs, with eEF1α1 expressed ubiquitously and eEF1α2 expression more limited to neurons and muscle cells. Here, we report that eEF1α2 plays a unique role in maintaining myofibril homeostasis during aging in Drosophila. Specifically, we generated an eEF1α2 null allele, which was viable and showed two distinct muscle phenotypes. In young flies, the mutants had thinner myofibrils in indirect flight muscles that could be rescued by expressing eEF1α1. With aging, the muscles of the mutant flies began showing abnormal distribution of actin and myosin in muscles, but without a change in actin and myosin protein levels. This age-related phenotype could not be rescued by eEF1α1 overexpression. These findings support an unconventional role of Drosophila eEF1α2 in age-related homeostasis of muscle myofibers.

翻译延伸因子 eEF1α(真核生物延伸因子 1α)通过将氨基酰-tRNA 运送到核糖体来介导 mRNA 翻译。然而,eEF1α的这些不同作用往往难以区分,而且在衰老的后生动物组织中仍鲜为人知。哺乳动物和果蝇的基因组编码了两种 eEF1α 对映体,其中 eEF1α1 广泛表达,而 eEF1α2 则仅限于神经元和肌肉细胞表达。在这里,我们报告了 eEF1α2 在果蝇衰老过程中维持肌原纤维稳态的独特作用。具体来说,我们产生了一个eEF1α2等位基因,该等位基因具有存活能力,并表现出两种不同的肌肉表型。在幼年果蝇中,突变体的间接飞行肌肉肌原纤维较细,但可以通过表达eEF1α1来挽救。随着年龄的增长,突变体苍蝇的肌肉中肌动蛋白和肌球蛋白的分布开始出现异常,但肌动蛋白和肌球蛋白的水平没有变化。eEF1α1的过表达并不能挽救这种与年龄相关的表型。这些发现支持果蝇eEF1α2在肌肉肌纤维与年龄相关的平衡中发挥非常规作用。
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引用次数: 0
Metabolic ripple effects - deciphering how lipid metabolism in cancer interfaces with the tumor microenvironment. 代谢涟漪效应--解读癌症中的脂质代谢如何与肿瘤微环境相互作用。
IF 4 3区 医学 Q2 CELL BIOLOGY Pub Date : 2024-09-01 Epub Date: 2024-09-16 DOI: 10.1242/dmm.050814
Patrick B Jonker, Alexander Muir

Cancer cells require a constant supply of lipids. Lipids are a diverse class of hydrophobic molecules that are essential for cellular homeostasis, growth and survival, and energy production. How tumors acquire lipids is under intensive investigation, as these mechanisms could provide attractive therapeutic targets for cancer. Cellular lipid metabolism is tightly regulated and responsive to environmental stimuli. Thus, lipid metabolism in cancer is heavily influenced by the tumor microenvironment. In this Review, we outline the mechanisms by which the tumor microenvironment determines the metabolic pathways used by tumors to acquire lipids. We also discuss emerging literature that reveals that lipid availability in the tumor microenvironment influences many metabolic pathways in cancers, including those not traditionally associated with lipid biology. Thus, metabolic changes instigated by the tumor microenvironment have 'ripple' effects throughout the densely interconnected metabolic network of cancer cells. Given the interconnectedness of tumor metabolism, we also discuss new tools and approaches to identify the lipid metabolic requirements of cancer cells in the tumor microenvironment and characterize how these requirements influence other aspects of tumor metabolism.

癌细胞需要源源不断的脂质供应。脂质是一类种类繁多的疏水分子,对细胞的平衡、生长和存活以及能量生产至关重要。人们正在深入研究肿瘤如何获得脂质,因为这些机制可以为癌症提供有吸引力的治疗靶点。细胞脂质代谢受到严格调控,并对环境刺激做出反应。因此,癌症中的脂质代谢在很大程度上受到肿瘤微环境的影响。在本综述中,我们将概述肿瘤微环境决定肿瘤获取脂质的代谢途径的机制。我们还讨论了新出现的文献,这些文献揭示了肿瘤微环境中的脂质可用性会影响癌症中的许多代谢途径,包括那些传统上与脂质生物学无关的途径。因此,由肿瘤微环境引发的代谢变化会对整个癌细胞相互紧密联系的代谢网络产生 "连锁 "效应。鉴于肿瘤代谢的相互关联性,我们还讨论了新的工具和方法,以确定肿瘤微环境中癌细胞的脂质代谢需求,并描述这些需求如何影响肿瘤代谢的其他方面。
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引用次数: 0
Supporting the evolution of infectious disease research. 支持传染病研究的发展。
IF 4 3区 医学 Q2 CELL BIOLOGY Pub Date : 2024-09-01 Epub Date: 2024-10-01 DOI: 10.1242/dmm.052112
Kirsty Hooper
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引用次数: 0
Axolotl mandible regeneration occurs through mechanical gap closure and a shared regenerative program with the limb. Axolotl 下颌骨的再生是通过机械缝隙闭合和与肢体共享再生程序实现的。
IF 4 3区 医学 Q2 CELL BIOLOGY Pub Date : 2024-09-01 Epub Date: 2024-09-27 DOI: 10.1242/dmm.050743
Julia Kramer, Rita Aires, Sean D Keeley, Tom Alexander Schröder, Günter Lauer, Tatiana Sandoval-Guzmán

The mandible plays an essential part in human life and, thus, defects in this structure can dramatically impair the quality of life in patients. Axolotls, unlike humans, are capable of regenerating their lower jaws; however, the underlying mechanisms and their similarities to those in limb regeneration are unknown. In this work, we used morphological, histological and transcriptomic approaches to analyze the regeneration of lateral resection defects in the axolotl mandible. We found that this structure can regenerate all missing tissues in 90 days through gap minimization, blastema formation and, finally, tissue growth, differentiation and integration. Moreover, transcriptomic comparisons of regenerating mandibles and limbs showed that they share molecular phases of regeneration, that these similarities peak during blastema stages and that mandible regeneration occurs at a slower pace. Altogether, our study demonstrates the existence of a shared regenerative program used in two different regenerating body structures with different embryonic origins in the axolotl and contributes to our understanding of the minimum requirements for a successful regeneration in vertebrates, bringing us closer to understand similar lesions in human mandibles.

下颌骨在人类生活中起着至关重要的作用,因此,这一结构的缺陷会严重影响患者的生活质量。与人类不同,轴龙能够再生其下颌骨,但其基本机制及其与肢体再生机制的相似性尚不清楚。在这项工作中,我们采用形态学、组织学和转录组学方法分析了斧腹鱼下颌骨侧面切除缺损的再生过程。我们发现,这种结构可以在90天内通过间隙最小化、胚芽组织形成以及最后的组织生长、分化和整合再生所有缺失组织。此外,对再生下颚和四肢的转录组比较表明,它们具有相同的再生分子阶段,这些相似性在胚泡阶段达到顶峰,而下颚的再生速度较慢。总之,我们的研究证明,在斧尾蜥胚胎起源不同的两种不同再生身体结构中,存在一个共享的再生程序,有助于我们理解脊椎动物成功再生的最低要求,使我们更接近于理解人类下颌骨的类似病变。
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引用次数: 0
Preclinical evaluation of targeted therapies for central nervous system metastases. 中枢神经系统转移瘤靶向疗法的临床前评估。
IF 4 3区 医学 Q2 CELL BIOLOGY Pub Date : 2024-09-01 Epub Date: 2024-09-30 DOI: 10.1242/dmm.050836
Alexander J Pfeil, Joshua D Hale, Tiger S Zhang, Kentaro Wakayama, Isao Miyazaki, Igor Odintsov, Romel Somwar

The central nervous system (CNS) represents a site of sanctuary for many metastatic tumors when systemic therapies that control the primary tumor cannot effectively penetrate intracranial lesions. Non-small cell lung cancers (NSCLCs) are the most likely of all neoplasms to metastasize to the brain, with up to 60% of patients developing CNS metastases during the disease process. Targeted therapies such as tyrosine kinase inhibitors (TKIs) have helped reduce lung cancer mortality but vary considerably in their capacity to control CNS metastases. The ability of these therapies to effectively target lesions in the CNS depends on several of their pharmacokinetic properties, including blood-brain barrier permeability, affinity for efflux transporters, and binding affinity for both plasma and brain tissue. Despite the existence of numerous preclinical models with which to characterize these properties, many targeted therapies have not been rigorously tested for CNS penetration during the discovery process, whereas some made it through preclinical testing despite poor brain penetration kinetics. Several TKIs have now been engineered with the characteristics of CNS-penetrant drugs, with clinical trials proving these efforts fruitful. This Review outlines the extent and variability of preclinical evidence for the efficacy of NSCLC-targeted therapies, which have been approved by the US Food and Drug Administration (FDA) or are in development, for treating CNS metastases, and how these data correlate with clinical outcomes.

当控制原发肿瘤的全身疗法无法有效穿透颅内病灶时,中枢神经系统(CNS)就成了许多转移性肿瘤的避难所。非小细胞肺癌(NSCLC)是所有肿瘤中最有可能向大脑转移的肿瘤,高达 60% 的患者在发病过程中会出现中枢神经系统转移。酪氨酸激酶抑制剂(TKIs)等靶向疗法有助于降低肺癌死亡率,但在控制中枢神经系统转移的能力方面却存在很大差异。这些疗法能否有效针对中枢神经系统的病变取决于其药代动力学特性,包括血脑屏障通透性、对外排转运体的亲和力以及与血浆和脑组织的结合亲和力。尽管有许多临床前模型可用于描述这些特性,但许多靶向治疗药物在发现过程中并未经过严格的中枢神经系统穿透测试,而有些药物尽管脑穿透动力学较差,但仍通过了临床前测试。现在,有几种 TKIs 已被设计为具有中枢神经系统穿透性的药物,临床试验证明这些努力卓有成效。本综述概述了已获美国食品药品管理局 (FDA) 批准或正在开发的 NSCLC 靶向疗法治疗中枢神经系统转移瘤的临床前疗效证据的范围和可变性,以及这些数据与临床结果的相关性。
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引用次数: 0
Sex-specific trisomic Dyrk1a-related skeletal phenotypes during development in a Down syndrome model. 在唐氏综合征小鼠模型的发育过程中,出现与三体 Dyrk1a 相关的骨骼表型的性别特异性。
IF 4 3区 医学 Q2 CELL BIOLOGY Pub Date : 2024-09-01 Epub Date: 2024-09-23 DOI: 10.1242/dmm.050914
Jonathan M LaCombe, Kourtney Sloan, Jared R Thomas, Matthew P Blackwell, Isabella Crawford, Flannery Bishop, Joseph M Wallace, Randall J Roper

Skeletal insufficiency affects all individuals with Down syndrome (DS) or trisomy 21 and may alter bone strength throughout development due to a reduced period of bone formation and early attainment of peak bone mass compared to those in typically developing individuals. Appendicular skeletal deficits also appear in males before females with DS. In femurs of male Ts65Dn DS model mice, cortical deficits were pronounced throughout development, but trabecular deficits and Dyrk1a overexpression were transitory until postnatal day (P) 30, when there were persistent trabecular and cortical deficits and Dyrk1a was trending toward overexpression. Correction of DS-related skeletal deficits by a purported DYRK1A inhibitor or through genetic means beginning at P21 was not effective at P30, but germline normalization of Dyrk1a improved male bone structure by P36. Trabecular and cortical deficits in female Ts65Dn mice were evident at P30 but subsided by P36, typifying periodic developmental skeletal normalizations that progressed to more prominent bone deficiencies. Sex-dependent differences in skeletal deficits with a delayed impact of trisomic Dyrk1a are important to find temporally specific treatment periods for bone and other phenotypes associated with trisomy 21.

骨骼发育不全会影响所有患有唐氏综合征(DS)或 21 三体综合征(Ts21)的个体,与发育正常的个体相比,由于骨骼形成期缩短和骨量峰值提前达到,骨骼发育不全可能会改变整个发育过程中的骨强度。患有 DS 的男性也会先于女性出现骨骼畸形。在雄性Ts65Dn DS模型小鼠的股骨中,皮质缺陷在整个发育过程中都很明显,但骨小梁缺陷和Dyrk1a过表达是暂时的,直到出生后第30天,才出现持续的骨小梁和皮质缺陷以及Dyrk1a过表达趋势。从 P21 开始,通过所谓的 DYRK1A 抑制剂或基因手段来纠正 DS 相关的骨骼缺陷,但在 P30 时效果不佳,但到 P36 时,Dyrk1a 的种系正常化改善了雄性的骨骼结构。雌性Ts65Dn小鼠的骨小梁和皮质缺陷在P30时很明显,但到P36时有所缓解,这是周期性骨骼发育正常化的典型表现,这种正常化会发展成更突出的骨骼缺陷。三体Dyrk1a的延迟影响导致骨骼缺陷的性别差异,这对于找到与Ts21相关的骨骼和其他表型的时间特异性治疗期非常重要。
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引用次数: 0
A Drosophila model for mechanistic investigation of tau protein spread. 果蝇模型:tau 蛋白扩散的机理研究
IF 4 3区 医学 Q2 CELL BIOLOGY Pub Date : 2024-09-01 Epub Date: 2024-10-01 DOI: 10.1242/dmm.050858
Kondalarao Bankapalli, Ruth E Thomas, Evelyn S Vincow, Gillian Milstein, Laura V Fisher, Leo J Pallanck

Brain protein aggregates are a hallmark of neurodegenerative disease. Previous work indicates that specific protein components of these aggregates are toxic, including tau (encoded by MAPT) in Alzheimer's disease and related tauopathies. Increasing evidence also indicates that these toxic proteins traffic between cells in a prion-like fashion, thereby spreading pathology from one brain region to another. However, the mechanisms involved in trafficking are poorly understood. We therefore developed a transgenic Drosophila model to facilitate rapid evaluation of candidate tau trafficking modifiers. Our model uses the bipartite Q system to drive co-expression of tau and GFP in the fly eye. We found age-dependent spread of tau into the brain, represented by detection of tau, but not of GFP. We also found that tau trafficking was attenuated upon inhibition of the endocytic factor dynamin (encoded by shi) or knockdown of glycogen synthase kinase-3β (GSK-3β, encoded by sgg). Further work revealed that dynamin promoted tau uptake in recipient tissues, whereas GSK-3β appeared to promote tau spread via direct phosphorylation of tau. Our robust and flexible system will promote the identification of tau-trafficking components involved in the pathogenesis of neurodegenerative diseases.

脑蛋白聚集体是神经退行性疾病的标志。以前的研究表明,这些聚集体中的特定蛋白质成分具有毒性,包括阿尔茨海默病和相关的牛磺酸病中的牛磺酸(由 MAPT 编码)。越来越多的证据还表明,这些有毒蛋白质会以类似朊病毒的方式在细胞间迁移,从而将病变从一个脑区扩散到另一个脑区。然而,人们对其贩运机制知之甚少。因此,我们开发了一种转基因果蝇模型,以便快速评估候选的 tau 转运调节剂。我们的模型使用双Q系统来驱动tau和GFP在果蝇眼睛中的共同表达。我们发现,tau向大脑的扩散与年龄有关,表现为检测到tau,而不是GFP。我们还发现,在抑制内细胞因子达因明(由 shi 编码)或敲除糖原合酶激酶-3β(由 sgg 编码的 GSK-3β)时,tau 的迁移会减弱。进一步的研究发现,达纳明促进了受体组织对 tau 的吸收,而 GSK-3β 似乎通过直接磷酸化 tau 来促进 tau 的扩散。我们的系统既稳健又灵活,将有助于鉴定神经退行性疾病发病机制中的tau-trafficking成分。
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引用次数: 0
The highly metastatic 4T1 breast carcinoma model possesses features of a hybrid epithelial/mesenchymal phenotype. 高度转移的 4T1 乳腺癌模型具有上皮-间充质混合表型的特征。
IF 4 3区 医学 Q2 CELL BIOLOGY Pub Date : 2024-09-01 Epub Date: 2024-09-04 DOI: 10.1242/dmm.050771
Mary E Herndon, Mitchell Ayers, Katherine N Gibson-Corley, Michael K Wendt, Lori L Wallrath, Michael D Henry, Christopher S Stipp

Epithelial-mesenchymal transitions (EMTs) are thought to promote metastasis via downregulation of E-cadherin (also known as Cdh1) and upregulation of mesenchymal markers such as N-cadherin (Cdh2) and vimentin (Vim). Contrary to this, E-cadherin is retained in many invasive carcinomas and promotes collective cell invasion. To investigate how E-cadherin regulates metastasis, we examined the highly metastatic, E-cadherin-positive murine 4T1 breast cancer model, together with the less metastatic, 4T1-related cell lines 4T07, 168FARN and 67NR. We found that 4T1 cells display a hybrid epithelial/mesenchymal phenotype with co-expression of epithelial and mesenchymal markers, whereas 4T07, 168FARN, and 67NR cells display progressively more mesenchymal phenotypes in vitro that relate inversely to their metastatic capacity in vivo. Using RNA interference and constitutive expression, we demonstrate that the expression level of E-cadherin does not determine 4T1 or 4T07 cell metastatic capacity in mice. Mechanistically, 4T1 cells possess highly dynamic, unstable cell-cell junctions and can undergo collective invasion without E-cadherin downregulation. However, 4T1 orthotopic tumors in vivo also contain subregions of EMT-like loss of E-cadherin. Thus, 4T1 cells function as a model for carcinomas with a hybrid epithelial/mesenchymal phenotype that promotes invasion and metastasis.

上皮-间质转换(EMT)被认为是通过下调 E-粘连蛋白和上调间质标记(如 N-粘连蛋白和波形蛋白)来促进转移的。与此相反,E-cadherin 在许多侵袭性癌中得以保留,并促进了细胞的集体侵袭。为了研究 E-cadherin如何调控转移,我们研究了高转移性、E-cadherin 阳性的小鼠 4T1 乳腺癌模型,以及转移性较低、与 4T1 相关的细胞系 4T07、168FARN 和 67NR。我们发现 4T1 细胞显示出混合-E/M 表型,同时表达上皮和间质标记,而 4T07、168FARN 和 67NR 在体外显示出逐渐增多的间质表型,这与其体内转移能力成反比。我们利用 RNA 干扰和组成型表达证明,E-cadherin 的表达水平并不能决定 4T1 或 4T07 细胞在小鼠体内的转移能力。从机理上讲,4T1 细胞具有高度动态、不稳定的细胞-细胞连接,可以在不下调 E-cadherin 的情况下发生集体侵袭。然而,体内的 4T1 正位肿瘤也包含类似 EMT 的 E-cadherin 缺失亚区。因此,4T1细胞可作为具有促进侵袭和转移的混合E/M表型的癌症模型。
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