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A random grid based molecular epidemiological study on EBLV isolates from Germany. 基于随机网格的德国EBLV分离株分子流行病学研究。
Pub Date : 2008-01-01
C Freuling, N Johnson, D A Marston, T Selhorst, L Geue, A R Fooks, N Tordo, T Müller

Germany has reported one of the highest levels of EBLV cases in bats in Europe. So far, all isolates originating from Germany have been identified as EBLV-1, using monoclonal antibodies, and a preliminary epidemiological study has indicated that there is a distinct geographical distribution of EBLV-1 in Germany. To further investigate the spatial and temporal distribution of EBLV-1 variants in Germany and their impact on molecular epidemiology, isolates were selected using a random grid sampling procedure based on GIS. Agrid layer 30 km long over the entire area of Germany was applied to 120 geo-referenced isolates and one isolate of each grid cell containing EBLV isolates was randomly chosen. Once selected, the nucleoprotein (N) plus parts of the phosphoprotein (P) gene of each isolate were sequenced using direct cycle sequencing. Results of the subsequent phylogenetic analysis of the N-gene confirmed previous studies on European EBLVs, showing a high sequence homology between German EBLV-1 isolates. Almost identical sequence homologies within certain geographical regions indicate genomic stability during the transmission cycle of EBLV-1, with little geographic spread or intermixing. Interestingly, a 6 bp insertion as well as a single nucleotide insertion, detected in the N-P intergenic region, has been found in EBLV-1 isolates from Germany.

德国报告了欧洲蝙蝠中EBLV病例最高水平的国家之一。到目前为止,所有来自德国的分离株均已通过单克隆抗体鉴定为EBLV-1,初步流行病学研究表明,EBLV-1在德国有明显的地理分布。为了进一步了解EBLV-1变异株在德国的时空分布及其对分子流行病学的影响,采用基于GIS的随机网格抽样方法选择分离株。对120个地理参考分离株应用了覆盖整个德国地区的30 km长的网格层,并在每个包含EBLV分离株的网格单元中随机选择一个分离株。一旦选择,每个分离物的核蛋白(N)和部分磷蛋白(P)基因使用直接循环测序测序。随后的n基因系统发育分析结果证实了先前对欧洲eblv的研究,显示德国EBLV-1分离株之间具有高度的序列同源性。在某些地理区域内几乎相同的序列同源性表明EBLV-1在传播周期中基因组稳定,几乎没有地理传播或混合。有趣的是,在德国的EBLV-1分离株中发现了在N-P基因间区检测到的6 bp插入和单核苷酸插入。
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引用次数: 0
DNA-based animal models of human disease: from genotype to phenotype. 基于dna的人类疾病动物模型:从基因型到表型。
Pub Date : 2008-01-01 DOI: 10.1159/000317140
L B Schook, K Kuzmuk, S Adam, L Rund, K Chen, M Rogatcheva, M Mazur, C Pollock, C Counter

Biomedical research utilizes animal models to elucidate human disease processes at the cellular and molecular level and for the development of new therapies. Traditionally, mammalian models have been limited to the mouse, primarily because of well characterized genetic lines and the ability to manipulate the genome to directly test hypotheses regarding causal mutations and disease phenotypes. The emerging availability of genome sequences of other mammals (bovine, canine, equine, feline, and porcine) now permits utilization of the mammal in which the phenotype best approximates the human condition. Equally important is the use of somatic cell nuclear cloning (SCNT) coupled with targeted germline manipulation to create animals to resolve the molecular mechanisms of the disease state. Our efforts have focused on the pig, which has emerged as an important biomedical mammalian model due to its closer physiology to humans. The utility of porcine genetically-defined tumour, cardiovascular and neurological disease models is described.

生物医学研究利用动物模型在细胞和分子水平上阐明人类疾病的过程,并开发新的治疗方法。传统上,哺乳动物模型仅限于小鼠,主要是因为小鼠具有良好的遗传系特征和操纵基因组以直接测试有关因果突变和疾病表型的假设的能力。其他哺乳动物(牛、犬、马、猫和猪)基因组序列的出现,现在允许利用表型最接近人类状况的哺乳动物。同样重要的是利用体细胞核克隆(SCNT)结合有针对性的种系操作来创造动物,以解决疾病状态的分子机制。我们的研究重点是猪,由于猪的生理机能与人类更接近,猪已成为重要的生物医学哺乳动物模型。描述了猪基因定义肿瘤、心血管和神经疾病模型的效用。
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引用次数: 13
Epigenetic regulation of genomes: nutrient-specific modulation of genetic networks in bovine cells. 基因组的表观遗传调控:牛细胞中遗传网络的营养特异性调节。
Pub Date : 2008-01-01 DOI: 10.1159/000317190
C-J Li, T H Elsasser, R W Li

The modern version of epigenetics includes the molecular mechanisms that influence the phenotypic outcome of a gene or genome, in absence of changes to the underlying DNA sequence. A host of genomic interrelationships with the diet evidently exist. The broad topic of nutrigenomics is defined as the interaction between nutrition and an individual's genome. Ruminant species have evolved to metabolize the short-chain volatile fatty acids (VFAs, acetate, propionate, and butyrate) to fulfill up to 70% of their nutrient energy requirements. The potential biological roles of VFAs were investigated using the established Madin-Darby bovine kidney epithelial cell line. Butyrate induces cell cycle arrest and apoptosis in bovine cells. Gene expression profiling indicated that butyrate induces many significant changes in the expression of genes associated with regulatory pathways that are critical to cell growth, immune response and signal transduction. Functional category and pathway analyses of the microarray data revealed that several canonical pathways (the cell cycle G2/M DNA damage checkpoint and G1/S checkpoint regulation; pyrimidine metabolism; and purine metabolism insulin-like growth factor axis components) were significantly affected.

现代版本的表观遗传学包括影响基因或基因组表型结果的分子机制,而不改变潜在的DNA序列。许多基因组与饮食之间的相互关系显然存在。营养基因组学的广泛主题被定义为营养和个体基因组之间的相互作用。反刍动物已经进化到能够代谢短链挥发性脂肪酸(VFAs,醋酸酯,丙酸酯和丁酸酯)来满足其70%的营养能量需求。利用已建立的Madin-Darby牛肾上皮细胞系研究了VFAs的潜在生物学作用。丁酸盐诱导牛细胞周期阻滞和细胞凋亡。基因表达谱显示,丁酸盐诱导了与细胞生长、免疫反应和信号转导相关的调控途径相关基因的表达发生了许多显著变化。微阵列数据的功能分类和通路分析揭示了几种典型通路(细胞周期G2/M DNA损伤检查点和G1/S检查点调节;嘧啶代谢;嘌呤代谢(胰岛素样生长因子轴组分)受到显著影响。
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引用次数: 8
Animal genomics for animal health. Closing remarks. 用于动物健康的动物基因组学。闭幕词。
Pub Date : 2008-01-01 DOI: 10.1159/000317210
B Vallat
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引用次数: 0
Identification of polymorphisms in bovine TLR2 and CARD15,associations between CARD15 polymorphisms and milk somatic cell score in Canadian Holsteins, and functional relevance of SNP c.3020A>T. 牛TLR2和CARD15多态性的鉴定,CARD15多态性与加拿大荷斯坦奶牛乳体细胞评分的相关性,以及SNP c.3020A>T的功能相关性。
Pub Date : 2008-01-01 DOI: 10.1159/000317167
S D Pant, F S Schenkel, I Leyva-Baca, B S Sharma, N A Karrow

Toll-like receptor-2 (TLR2) and caspase recruitmentdomain 15 (CARD15) are important pattern recognition receptors that play a role in the initiation of the inflammatory and subsequent immune response. They have been previously identified as susceptibility loci for inflammatory bowel diseases in humans and are, therefore, suitable candidate genes for inflammatory disease resistance in cattle. The objective of this study was to identify single nucleotide polymorphisms (SNPs) in the bovine TLR2 and CARD15 and evaluate the association of these SNPs with health and production traits in a population of Canadian Holstein bulls. A selective DNA pool was constructed based on the estimated breeding values (EBVs) for somatic cell score (SCS). Gene segments were amplified from this pool in PCR reactions and the amplicons sequenced to reveal polymorphisms. A total of four SNPs, including one in intron 10 (c.2886-14A>G) and three in exon 12 (c.3020A>T, c.4500A>C and c.4950C>T)were identified in CARD15; nonewere identified in TLR2. Canadian Holstein bulls (n=338) were genotyped and haplotypes were reconstructed. Two SNPs, c.3020A>T and c.4500A>C, were associated with EBVs for health and production traits. The SNP, c.3020A>T for example, was associated with SCS EBVs (p = 0.0097) with an allele substitution effect of 0.07 score. When compared to the most frequent haplotype Hap12(AC), Hap22(TC) was associated with increased milk (p < 0.0001) and protein (p = 0.0007) yield EBVs, and hap21(TA) was significantly associated with increased SCS EBV (p = 0.0120). All significant comparison-wise associations retained significance at 8% experimental-wise level by permutation test. The role of SNP c.3020A>T in MDP induced IL-1beta expression was investigated by real-time quantitative reverse transcription-PCR (real-time quantitative RT-PCR). The induction of IL-1beta by MDP was highly variable between individuals, and no association was observed between IL-1beta expression and SNP c.3020A>T genotypes. In summary, the association study indicates that SNP c.3020A>T might play a role in the host response against mastitis; however, it is not the sole determinant of MDP induced IL-1beta expression in blood leukocytes. Further detailed studies are needed to understand the functional implications of SNP c.3020A>T.

toll样受体-2 (TLR2)和caspase募集结构域15 (CARD15)是重要的模式识别受体,在炎症和随后的免疫反应的启动中发挥作用。它们先前已被确定为人类炎症性肠病的易感性位点,因此是牛抗炎症性疾病的合适候选基因。本研究的目的是鉴定牛TLR2和CARD15的单核苷酸多态性(snp),并评估这些snp与加拿大荷斯坦公牛群体健康和生产性状的关系。根据体细胞评分(SCS)的估计育种值(EBVs)构建了选择性DNA库。在PCR反应中扩增出基因片段,并对扩增子进行测序以揭示多态性。在CARD15中共鉴定出4个snp,其中1个位于内含子10 (C .2886- 14a >G), 3个位于外显子12 (C . 3020a >T, C . 4500a >C和C . 4950c >T);TLR2中未发现。对338头加拿大荷斯坦公牛进行了基因分型和单倍型重建。两个snp, C . 3020a >T和C . 4500a >C,在健康和生产性状上与ebv相关。例如,c.3020A>T SNP与SCS ebv相关(p = 0.0097),等位基因替代效应为0.07分。与最常见的单倍型Hap12(AC)相比,Hap22(TC)与增加的产奶量(p < 0.0001)和蛋白质(p = 0.0007) EBV相关,而hap21(TA)与增加的SCS EBV显著相关(p = 0.0120)。通过排列检验,所有显著的比较相关性在8%的实验水平上保持显著性。采用实时定量逆转录pcr (real-time quantitative RT-PCR)技术研究SNP c.3020A>T在MDP诱导il -1 β表达中的作用。MDP对il -1 β的诱导在个体间存在很大差异,il -1 β的表达与SNP c.3020A>T基因型之间没有相关性。综上所述,关联研究提示SNP c.3020A>T可能在宿主对乳腺炎的应答中发挥作用;然而,它不是MDP诱导血液白细胞中il -1 β表达的唯一决定因素。SNP c.3020A>T的功能意义有待进一步深入研究。
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引用次数: 15
Transcriptional response of chicken macrophages to Salmonella enterica serovar enteritidis infection. 鸡巨噬细胞对肠炎沙门氏菌血清型感染的转录反应。
Pub Date : 2008-01-01 DOI: 10.1159/000317154
S Zhang, H S Lillehoj, C-H Kim, C L Keeler, U Babu, M Z Zhang

The transcriptional profiles of chicken macrophages (HD11) infected with Salmonella enterica serovar Enteritidis (SE) were analyzed by using an avian macrophage microarray and real time RT-PCR. Out of 4906 array elements interrogated, 269 genes exhibited a 2 fold change (P < 0.001) over a 24 h time-course. Genes coding for proinflammatory cytokines, CC and CXC chemokines, and chemokine ligand were upregulated; whereas genes associated with transcription, cell adhesion and proliferation were downregulated. Most transcriptional changes occurred at 5 hours post-inoculation (hpi), with more genes downregulated than upregulated.At 5 hpi, the levels of gallinacin 1, lymphotactin, RhoA, and MHCIB2M transcripts were significantly decreased. In contrast, the levels of Cdc42 and MHCIIBLB2 mRNA were elevated. Infection of HD11 cells with mutant SE strains carrying an inactivated type three secretion system (TTSS1 or TTSS2) induced significantly higher levels of CCL4, K203, lymphotactin, and RhoA than wild type SE. In conclusion, chicken macrophage genes belonging to diverse functional classes were transcriptionally modulated by SE and selective modulation of host innate responses involved the effectors of TTSS1/2.

采用禽巨噬细胞芯片和实时RT-PCR技术分析了感染沙门氏菌(SE)的鸡巨噬细胞(HD11)的转录谱。在被调查的4906个阵列元素中,269个基因在24小时的时间过程中表现出2倍的变化(P < 0.001)。促炎细胞因子、CC和CXC趋化因子及趋化因子配体编码基因上调;而与转录、细胞粘附和增殖相关的基因则下调。大多数转录变化发生在接种后5小时(hpi),基因下调多于上调。在5 hpi时,鸡酸1、淋巴蛋白、RhoA和MHCIB2M转录物的水平显著降低。相比之下,Cdc42和MHCIIBLB2 mRNA水平升高。携带失活的三型分泌系统(TTSS1或TTSS2)的突变型SE菌株感染HD11细胞后,CCL4、K203、淋巴趋动素和RhoA的水平明显高于野生型SE。综上所述,SE可对鸡巨噬细胞中不同功能类别的基因进行转录调节,而宿主先天反应的选择性调节涉及TTSS1/2的效应物。
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引用次数: 28
WELYSSA: a simple tool using mouse monoclonal antibodies for the detection of lyssavirus nucleocapsid in rabies suspected specimens. WELYSSA:一种使用小鼠单克隆抗体检测狂犬病疑似标本中溶血病毒核衣壳的简单工具。
Pub Date : 2008-01-01
G Xu, P Weber, Q Hu, H Xue, L Audry, C Li, J Wu, H Bourhy

A Monoclonal antibody (MAb)-based capture enzyme-linked immunosorbent assay (ELISA) named WELYSSA was developed for the diagnosis of rabies suspected specimens using prototype viruses from the different genotypes of lyssavirus and from various geographic origins and phylogenetic lineages. It included a panel of 1,660 specimens received for rabies diagnostic testing, and was found to be highly specific (99.9%) and sensitive (97.0%) when compared to other recommended rabies diagnostic methods.

建立了一种基于单克隆抗体(MAb)的捕获酶联免疫吸附试验(ELISA),用于狂犬病疑似标本的诊断,使用来自不同地理来源和系统发育谱系的不同溶血病毒基因型的原型病毒。它包括一组用于狂犬病诊断测试的1,660个标本,与其他推荐的狂犬病诊断方法相比,发现具有高度特异性(99.9%)和敏感性(97.0%)。
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引用次数: 0
Animal genomics for animal health report: critical needs, problems to be solved, potential solutions, and a roadmap for moving forward. 动物基因组学促进动物健康报告:关键需求、有待解决的问题、潜在解决方案以及前进路线图。
Pub Date : 2008-01-01 DOI: 10.1159/000317192
A Archibald, J-C Audonnet, L Babiuk, S C Bishop, C G Gay, J McKay, B Mallard, G Plastow, M-H Pinard van der Laan, M Torremorell

The first International Symposium on Animal Genomics for Animal Health, held at the World Organisation for Animal Health (OIE) Headquarter, 23-25 October, 2007, Paris, France, assembled more than 250 participants representing research organizations from 26 countries. The symposium included a roundtable discussion on critical needs, challenges and opportunities, and a forward look at the potential applications of animal genomics in animal health research. The aim of the roundtable discussion was to foster a dialogue between scientists working at the cutting edge of animal genomics research and animal health scientists. In an effort to broaden the perspective of the roundtable discussion, the organizers set out four priority areas to advance the use of genome-enabled technologies in animal health research. Contributions were obtained through open discussions and a questionnaire distributed at the start of the symposium. This symposium report provides detailed summaries ofthe outcome ofthe roundtable discussion for each of the four priority areas. For each priority, the problems needing to be solved, according to the views of the participants, are identified, including potential solutions, recommendations, and lastly, concrete steps that could be taken to address these problems. This report serves as a roadmap to steer research priorities in animal genomics research.

第一届动物基因组学促进动物健康国际研讨会于 2007 年 10 月 23-25 日在法国巴黎世界动物卫生组织(OIE)总部举行,来自 26 个国家研究机构的 250 多名代表参加了会议。研讨会包括一场关于关键需求、挑战和机遇的圆桌讨论,以及动物基因组学在动物健康研究中的潜在应用展望。圆桌讨论的目的是促进从事动物基因组学前沿研究的科学家与动物健康科学家之间的对话。为了拓宽圆桌讨论的视野,组织者提出了四个优先领域,以推动基因组技术在动物健康研究中的应用。与会者通过公开讨论和研讨会开始时分发的调查问卷发表了意见。本研讨会报告详细总结了四个优先领域的圆桌讨论结果。根据与会者的意见,为每个优先领域确定了需要解决的问题,包括潜在的解决方案、建议,以及最后为解决这些问题可以采取的具体步骤。本报告可作为指导动物基因组学研究优先事项的路线图。
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引用次数: 0
Factors influencing the antibody response to vaccination against rabies. 影响狂犬病疫苗抗体应答的因素。
Pub Date : 2008-01-01
V Jakel, M König, K Cussler, K Hanschmann, H-J Thiel

Preventive vaccination against rabies virus is a highly effective method for preventing rabies in humans and animals. For travel purposes, vaccination of domestic carnivores is obligatory. In addition, some countries require testing for neutralizing antibodies against rabies. The minimal threshold level accepted by WHO/OIE is 0.5 IU/ml. Despite proper vaccination some animals do not reach the threshold. The objective of this study was to identify specific risk factors in dogs and cats for post-vaccination rabies antibody titres below 0.5 IU/ml by FAVN test. Rabies vaccination protocols and recommendations were reviewed with regard to travel regulations. Comprehensive data was collected on animals tested for rabies antibodies via a questionnaire sent to veterinarians who submitted sera for rabies titration. The questionnaire included data on species, age, sex, breed, vaccine used, date of last vaccination and blood sampling, vaccination history and further medical treatments at time of vaccination. Data on around 1,200 animals was analysed. Most animals older than one year had already received more than one rabies vaccination. The influence of breed and sex on antibody titre seems to be insignificant. Young dogs have a high risk of results below 0.5 IU/ml after their first vaccination. This risk can be minimised by the application of a second vaccination and blood sampling according to the manufacturer's recommendations. An important factor for the test outcome might be the virus strain used in the vaccine.

预防狂犬病疫苗接种是预防人类和动物狂犬病的一种非常有效的方法。为了旅行的目的,必须给家养食肉动物接种疫苗。此外,一些国家要求检测狂犬病中和抗体。世界卫生组织/世界动物卫生组织接受的最低阈值水平为0.5 IU/ml。尽管接种了适当的疫苗,一些动物仍达不到临界值。本研究的目的是通过FAVN试验确定犬和猫疫苗接种后狂犬病抗体滴度低于0.5 IU/ml的特定危险因素。对旅行条例方面的狂犬病疫苗接种方案和建议进行了审查。通过向提交狂犬病滴定血清的兽医发送问卷,收集了对动物进行狂犬病抗体测试的全面数据。调查问卷包括物种、年龄、性别、品种、使用的疫苗、最后一次接种日期和血液采样、疫苗接种史和接种疫苗时的进一步医疗情况等数据。研究人员分析了大约1200只动物的数据。大多数一岁以上的动物已经接种了不止一次狂犬病疫苗。品种和性别对抗体滴度的影响似乎不显著。幼犬在第一次接种疫苗后,结果低于0.5 IU/ml的风险很高。根据制造商的建议,可以通过第二次疫苗接种和血液采样将这种风险降到最低。测试结果的一个重要因素可能是疫苗中使用的病毒株。
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引用次数: 0
What have we achieved since Kiev? Looking forward. 自基辅事件以来,我们取得了什么成就?期待。
Pub Date : 2008-01-01
D J Briggs

There have been many changes and accomplishments in rabies control and prevention since the first International conference "Rabies in Europe" was held in Kiev on June 15-18, 2005. Recommendations from the 2005 meeting addressed epidemiology; rabies diagnosis; animal rabies control; human rabies prevention; vaccinology and immunology and bat rabies. This paper will adhere to the same topics of interest in order to review the accomplishments that have been achieved since Kiev.

自2005年6月15日至18日在基辅举行第一届“欧洲狂犬病”国际会议以来,在狂犬病控制和预防方面取得了许多变化和成就。2005年会议提出的建议涉及流行病学;狂犬病诊断;动物狂犬病控制;预防人类狂犬病;疫苗学,免疫学和蝙蝠狂犬病。本文将坚持相同的主题,以审查自基辅以来取得的成就。
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引用次数: 0
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